==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=19-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA BINDING PROTEIN 29-MAY-04 1WJV . COMPND 2 MOLECULE: CELL GROWTH REGULATING NUCLEOLAR PROTEIN LYAR; . SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; . AUTHOR M.YONEYAMA,N.TOCHIO,S.KOSHIBA,M.INOUE,T.KIGAWA,Y.MUTO, . 79 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6690.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 44 55.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 13 16.5 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 2 2.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 13 16.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 8 10.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 9 11.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 95 0, 0.0 2,-2.2 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 128.0 11.5 8.2 10.5 2 2 A S + 0 0 143 4,-0.0 2,-0.3 2,-0.0 3,-0.1 -0.427 360.0 120.9 -67.4 81.5 15.2 8.5 11.0 3 3 A S S S- 0 0 78 -2,-2.2 3,-0.1 1,-0.1 0, 0.0 -0.980 77.9-101.4-144.8 155.1 15.8 11.5 8.8 4 4 A G S S- 0 0 92 -2,-0.3 2,-0.3 1,-0.1 -1,-0.1 0.892 101.5 -8.5 -38.5 -59.7 17.1 15.1 9.0 5 5 A S S S- 0 0 99 -3,-0.1 2,-0.2 2,-0.0 -1,-0.1 -0.958 74.6-106.4-142.5 159.3 13.6 16.5 9.1 6 6 A S + 0 0 121 -2,-0.3 -4,-0.0 -3,-0.1 -2,-0.0 -0.514 65.6 101.1 -85.5 154.0 10.0 15.4 8.6 7 7 A G + 0 0 69 -2,-0.2 2,-0.3 1,-0.1 -1,-0.1 0.520 43.0 124.1 133.4 68.5 7.9 16.2 5.5 8 8 A M - 0 0 87 49,-0.0 2,-0.6 14,-0.0 -1,-0.1 -0.955 61.6 -93.8-145.5 162.7 7.5 13.5 2.9 9 9 A V - 0 0 9 -2,-0.3 13,-1.9 47,-0.2 2,-0.2 -0.694 42.3-163.9 -83.4 119.9 4.8 11.6 1.0 10 10 A F E -A 21 0A 59 -2,-0.6 32,-0.6 11,-0.2 31,-0.5 -0.655 3.2-162.8-102.0 159.4 4.0 8.3 2.7 11 11 A F E -AB 20 40A 1 9,-2.2 9,-1.5 -2,-0.2 2,-0.5 -0.914 16.6-128.8-137.8 163.8 2.1 5.3 1.3 12 12 A T E -AB 19 39A 51 27,-2.1 27,-0.7 -2,-0.3 2,-0.4 -0.937 22.2-133.1-120.9 110.8 0.3 2.2 2.5 13 13 A C E - B 0 38A 2 5,-2.1 5,-0.4 -2,-0.5 4,-0.4 -0.449 12.4-164.2 -63.2 114.0 1.2 -1.2 1.0 14 14 A N S S+ 0 0 97 23,-1.2 -1,-0.2 -2,-0.4 24,-0.1 0.264 81.2 70.5 -83.3 12.8 -2.1 -2.9 0.2 15 15 A A S S- 0 0 37 3,-0.1 -1,-0.2 22,-0.1 20,-0.1 0.867 126.0 -12.4 -93.7 -47.9 -0.1 -6.2 -0.1 16 16 A C S S- 0 0 82 -3,-0.2 -2,-0.1 2,-0.1 19,-0.0 0.668 98.3 -99.9-121.4 -46.3 0.8 -6.8 3.5 17 17 A G + 0 0 54 -4,-0.4 2,-0.3 1,-0.2 -3,-0.1 0.708 64.3 138.2 118.7 63.9 0.0 -3.7 5.4 18 18 A E - 0 0 116 -5,-0.4 -5,-2.1 2,-0.0 2,-1.3 -0.968 58.2-106.6-136.2 151.3 3.1 -1.5 6.1 19 19 A S E +A 12 0A 97 -2,-0.3 2,-0.5 -7,-0.2 -7,-0.2 -0.630 44.7 179.7 -79.6 95.7 3.9 2.2 6.1 20 20 A V E -A 11 0A 6 -9,-1.5 -9,-2.2 -2,-1.3 5,-0.0 -0.865 16.5-141.9-103.0 127.7 6.0 2.5 2.9 21 21 A K E > -A 10 0A 44 -2,-0.5 4,-1.8 -11,-0.3 -11,-0.2 -0.192 29.6 -99.4 -77.6 173.9 7.3 6.0 1.9 22 22 A K T 4 S+ 0 0 39 -13,-1.9 4,-0.5 1,-0.2 3,-0.5 0.976 125.6 32.8 -58.1 -59.8 7.6 7.3 -1.6 23 23 A I T > S+ 0 0 106 1,-0.2 4,-0.7 -14,-0.2 3,-0.5 0.780 113.9 63.6 -68.6 -27.0 11.3 6.6 -2.0 24 24 A Q H >> S+ 0 0 84 1,-0.2 4,-2.9 2,-0.2 3,-0.6 0.844 82.5 79.5 -65.6 -34.3 10.9 3.5 0.2 25 25 A V H 3X S+ 0 0 1 -4,-1.8 4,-2.9 -3,-0.5 5,-0.3 0.884 89.1 54.4 -37.9 -56.0 8.6 1.9 -2.3 26 26 A E H 3> S+ 0 0 144 -4,-0.5 4,-1.2 -3,-0.5 -1,-0.3 0.913 114.8 40.0 -46.8 -51.5 11.6 0.9 -4.4 27 27 A K H XX S+ 0 0 158 -4,-0.7 4,-1.0 -3,-0.6 3,-0.7 0.974 115.2 50.8 -63.9 -56.8 13.1 -0.9 -1.4 28 28 A H H >X S+ 0 0 25 -4,-2.9 4,-2.8 1,-0.3 3,-1.7 0.940 104.4 57.0 -45.3 -62.2 9.9 -2.3 -0.1 29 29 A V H 3< S+ 0 0 58 -4,-2.9 -1,-0.3 1,-0.3 -2,-0.2 0.845 96.6 66.9 -38.3 -44.6 8.9 -3.8 -3.4 30 30 A S H << S+ 0 0 81 -4,-1.2 -1,-0.3 -3,-0.7 -2,-0.2 0.906 116.7 23.8 -44.9 -51.6 12.2 -5.7 -3.3 31 31 A N H << S+ 0 0 154 -3,-1.7 2,-1.1 -4,-1.0 -2,-0.2 0.918 121.4 59.4 -82.1 -48.8 10.9 -7.7 -0.3 32 32 A C >< + 0 0 9 -4,-2.8 3,-0.8 -5,-0.2 -1,-0.2 -0.710 57.9 173.1 -87.0 97.5 7.2 -7.4 -1.0 33 33 A R T 3 S+ 0 0 212 -2,-1.1 -1,-0.1 1,-0.2 -4,-0.1 0.000 70.3 70.1 -92.3 28.6 6.6 -8.9 -4.4 34 34 A N T 3 + 0 0 88 -5,-0.1 2,-1.0 2,-0.0 -1,-0.2 0.151 60.8 126.9-127.9 15.0 2.9 -8.5 -4.0 35 35 A C < + 0 0 35 -3,-0.8 3,-0.1 1,-0.2 -22,-0.0 -0.669 16.6 146.7 -80.8 103.9 2.6 -4.8 -4.2 36 36 A E + 0 0 153 -2,-1.0 13,-1.1 1,-0.3 2,-0.3 0.818 64.9 21.2-102.6 -48.2 -0.0 -4.0 -6.9 37 37 A C E - C 0 48A 12 11,-0.2 -23,-1.2 13,-0.1 -1,-0.3 -0.900 64.6-162.8-124.7 153.6 -1.7 -0.9 -5.6 38 38 A L E -BC 13 47A 4 9,-1.9 9,-3.2 -2,-0.3 2,-0.4 -0.949 4.5-151.9-134.9 155.0 -0.7 1.8 -3.2 39 39 A S E -BC 12 46A 35 -27,-0.7 -27,-2.1 -2,-0.3 2,-0.7 -0.979 14.1-133.7-130.4 141.4 -2.5 4.6 -1.2 40 40 A C E >> -BC 11 45A 2 5,-2.0 4,-1.3 -2,-0.4 5,-0.7 -0.835 13.8-173.6 -97.3 114.9 -1.3 8.0 0.0 41 41 A I T 45S+ 0 0 107 -2,-0.7 -1,-0.2 -31,-0.5 -30,-0.1 0.807 78.1 74.9 -74.1 -30.5 -2.2 8.7 3.6 42 42 A D T 45S- 0 0 101 -32,-0.6 -1,-0.2 1,-0.1 -31,-0.1 0.902 129.0 -7.9 -47.2 -48.5 -0.9 12.2 3.4 43 43 A C T 45S- 0 0 26 -3,-0.3 -2,-0.2 2,-0.1 -1,-0.1 0.698 102.1-108.3-117.7 -45.8 -3.9 13.2 1.4 44 44 A G T <5 + 0 0 45 -4,-1.3 2,-0.3 1,-0.2 -3,-0.2 0.758 56.9 143.8 109.7 75.8 -5.8 10.0 0.6 45 45 A K E < -C 40 0A 100 -5,-0.7 -5,-2.0 2,-0.0 2,-0.4 -0.994 43.8-121.7-143.1 147.9 -5.7 8.8 -3.0 46 46 A D E -C 39 0A 84 -2,-0.3 2,-0.4 -7,-0.2 -7,-0.2 -0.740 21.5-172.5 -92.3 134.7 -5.5 5.4 -4.7 47 47 A F E -C 38 0A 13 -9,-3.2 -9,-1.9 -2,-0.4 5,-0.3 -0.816 7.1-167.7-130.3 92.5 -2.6 4.7 -7.1 48 48 A W E > -C 37 0A 134 -2,-0.4 3,-1.1 -11,-0.2 -11,-0.2 -0.401 57.6 -16.9 -77.0 154.8 -2.9 1.5 -9.0 49 49 A G G > S- 0 0 44 -13,-1.1 2,-0.6 1,-0.2 3,-0.5 -0.164 131.6 -18.9 51.2-140.1 0.1 0.0 -10.9 50 50 A D G 3 S+ 0 0 137 1,-0.2 4,-0.4 2,-0.1 -1,-0.2 -0.259 108.0 106.6 -92.7 46.4 2.9 2.5 -11.6 51 51 A D G X> + 0 0 72 -3,-1.1 3,-1.1 -2,-0.6 4,-1.0 0.873 61.5 68.6 -89.1 -44.9 0.6 5.5 -10.9 52 52 A Y T <4 S+ 0 0 33 -3,-0.5 -1,-0.1 -5,-0.3 3,-0.1 0.807 87.4 74.7 -43.8 -33.4 2.0 6.5 -7.5 53 53 A K T 34 S+ 0 0 80 1,-0.2 -1,-0.3 -6,-0.0 -2,-0.2 0.937 93.2 48.2 -45.4 -60.8 5.1 7.5 -9.4 54 54 A S T <4 S+ 0 0 98 -3,-1.1 2,-0.8 -4,-0.4 -1,-0.2 0.880 92.4 90.7 -49.2 -42.8 3.5 10.6 -10.9 55 55 A H < + 0 0 13 -4,-1.0 3,-0.1 1,-0.2 -1,-0.1 -0.423 42.6 147.6 -61.2 102.3 2.3 11.5 -7.4 56 56 A V + 0 0 76 -2,-0.8 2,-0.3 1,-0.2 -47,-0.2 0.641 64.9 12.4-109.5 -25.2 5.2 13.6 -6.1 57 57 A K - 0 0 132 -3,-0.2 -1,-0.2 2,-0.1 -49,-0.0 -0.877 61.2-128.5-144.1 175.1 3.2 16.0 -3.9 58 58 A C + 0 0 31 -2,-0.3 2,-0.4 -3,-0.1 3,-0.3 -0.239 65.8 117.2-123.1 42.9 -0.2 16.5 -2.3 59 59 A I + 0 0 134 1,-0.2 -2,-0.1 3,-0.0 3,-0.1 -0.884 65.1 24.6-114.5 144.7 -0.9 20.1 -3.4 60 60 A S S S+ 0 0 123 -2,-0.4 2,-0.4 1,-0.2 -1,-0.2 0.913 83.5 133.9 73.2 44.7 -3.7 21.4 -5.7 61 61 A E > - 0 0 71 -3,-0.3 2,-2.9 -18,-0.0 3,-0.6 -0.919 50.2-150.5-131.6 107.3 -6.0 18.5 -5.0 62 62 A G T 3 + 0 0 78 -2,-0.4 -3,-0.0 1,-0.2 0, 0.0 -0.341 57.0 124.4 -73.4 64.0 -9.7 19.2 -4.2 63 63 A Q T 3 + 0 0 92 -2,-2.9 -1,-0.2 1,-0.1 -20,-0.0 0.882 58.6 64.9 -88.6 -46.2 -10.0 16.1 -2.0 64 64 A K S < S+ 0 0 164 -3,-0.6 2,-0.5 3,-0.1 -2,-0.1 0.893 92.6 72.0 -42.2 -51.2 -11.3 17.7 1.2 65 65 A Y S S+ 0 0 201 2,-0.1 2,-0.4 0, 0.0 -1,-0.0 -0.580 106.2 4.5 -73.8 118.3 -14.5 18.8 -0.7 66 66 A G + 0 0 43 -2,-0.5 2,-2.4 1,-0.0 3,-0.1 -0.937 60.8 131.2 116.8-134.1 -16.6 15.7 -1.3 67 67 A G + 0 0 82 -2,-0.4 3,-0.5 1,-0.2 -2,-0.1 -0.378 52.8 105.8 78.1 -64.2 -15.9 12.2 -0.1 68 68 A K + 0 0 188 -2,-2.4 -1,-0.2 1,-0.2 3,-0.0 0.042 40.0 89.5 -44.3 157.2 -19.4 11.7 1.3 69 69 A G S S+ 0 0 55 -3,-0.1 2,-0.4 0, 0.0 -1,-0.2 -0.403 87.2 14.8 150.5 -67.9 -21.7 9.4 -0.7 70 70 A Y - 0 0 212 -3,-0.5 0, 0.0 1,-0.1 0, 0.0 -0.984 48.9-153.6-144.9 129.8 -21.5 5.8 0.3 71 71 A E S S+ 0 0 190 -2,-0.4 -1,-0.1 2,-0.0 -3,-0.0 0.967 73.9 90.3 -63.6 -55.1 -20.0 4.1 3.4 72 72 A A + 0 0 88 1,-0.1 -2,-0.1 0, 0.0 3,-0.0 -0.108 45.2 163.6 -44.9 134.6 -19.3 0.8 1.7 73 73 A K + 0 0 197 2,-0.0 -1,-0.1 0, 0.0 -2,-0.0 0.682 41.3 89.8-120.3 -60.0 -15.8 0.7 0.2 74 74 A S + 0 0 120 1,-0.1 3,-0.0 3,-0.0 0, 0.0 -0.091 56.7 138.2 -44.6 136.8 -14.7 -2.8 -0.6 75 75 A G - 0 0 59 -3,-0.0 2,-0.3 0, 0.0 4,-0.1 -0.879 52.0 -33.7-161.7-167.0 -15.7 -3.8 -4.1 76 76 A P - 0 0 102 0, 0.0 0, 0.0 0, 0.0 0, 0.0 -0.503 50.5-128.4 -69.8 124.7 -14.8 -5.6 -7.4 77 77 A S S S+ 0 0 101 -2,-0.3 2,-1.2 1,-0.1 -3,-0.0 0.849 94.9 86.0 -37.4 -46.4 -11.1 -5.3 -8.2 78 78 A S 0 0 103 1,-0.2 -1,-0.1 -3,-0.0 0, 0.0 -0.440 360.0 360.0 -63.7 95.4 -12.2 -4.0 -11.7 79 79 A G 0 0 122 -2,-1.2 -1,-0.2 -4,-0.1 -2,-0.1 0.818 360.0 360.0-108.9 360.0 -12.7 -0.4 -10.9