==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=19-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RNA BINDING PROTEIN 17-DEC-04 1WVN . COMPND 2 MOLECULE: POLY(RC)-BINDING PROTEIN 1; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR M.C.J.WILCE,J.A.WILCE,M.SIDIQU . 74 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4880.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 49 66.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 14 18.9 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 1 1.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 8 10.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 24 32.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 1 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A P 0 0 147 0, 0.0 4,-0.3 0, 0.0 3,-0.0 0.000 360.0 360.0 360.0 140.6 11.3 6.6 -18.9 2 2 A L > + 0 0 172 1,-0.2 3,-0.7 2,-0.2 0, 0.0 0.835 360.0 53.0 -78.6 -42.3 10.8 10.4 -19.5 3 3 A G T 3 S+ 0 0 83 1,-0.2 -1,-0.2 55,-0.0 0, 0.0 0.606 102.8 60.4 -70.1 -13.8 7.1 10.5 -18.6 4 4 A S T 3 S+ 0 0 50 54,-0.1 55,-0.4 2,-0.0 -1,-0.2 0.669 78.0 109.1 -88.2 -15.9 7.7 8.9 -15.2 5 5 A Q < + 0 0 116 -3,-0.7 2,-0.2 -4,-0.3 53,-0.2 -0.411 39.7 147.1 -72.3 128.9 10.1 11.6 -13.8 6 6 A T E -A 57 0A 75 51,-2.7 51,-1.8 -2,-0.2 2,-0.4 -0.782 38.9-109.6-144.5-172.5 8.7 13.8 -11.1 7 7 A T E -A 56 0A 90 -2,-0.2 2,-0.3 49,-0.2 49,-0.2 -0.979 23.8-175.5-132.2 141.0 9.9 15.6 -8.0 8 8 A H E -A 55 0A 70 47,-2.7 47,-2.4 -2,-0.4 2,-0.3 -0.893 6.3-158.5-129.9 162.6 9.3 15.1 -4.3 9 9 A E E +A 54 0A 82 -2,-0.3 2,-0.3 45,-0.2 45,-0.2 -0.996 14.6 162.0-141.8 143.7 10.2 17.0 -1.1 10 10 A L E -A 53 0A 33 43,-2.3 43,-2.5 -2,-0.3 2,-0.5 -0.959 30.0-119.7-150.9 173.0 10.6 16.2 2.6 11 11 A T E -A 52 0A 80 -2,-0.3 41,-0.2 41,-0.2 -2,-0.0 -0.974 14.4-158.9-121.8 127.0 12.2 17.5 5.8 12 12 A I E -A 51 0A 7 39,-3.2 39,-3.4 -2,-0.5 5,-0.1 -0.891 34.0-108.9 -96.1 129.7 14.8 15.8 7.9 13 13 A P E >> -A 50 0A 58 0, 0.0 3,-2.4 0, 0.0 4,-0.7 -0.342 29.9-120.1 -56.5 139.8 15.1 17.0 11.5 14 14 A N G >4 S+ 0 0 56 35,-2.9 3,-0.7 1,-0.3 4,-0.5 0.789 111.3 60.6 -53.4 -36.2 18.4 19.0 11.9 15 15 A N G 34 S+ 0 0 135 34,-0.3 -1,-0.3 1,-0.2 4,-0.1 0.599 110.1 44.6 -68.8 -11.5 19.8 16.6 14.5 16 16 A L G X> S+ 0 0 55 -3,-2.4 4,-1.5 2,-0.1 3,-0.8 0.530 85.1 88.0-110.2 -13.7 19.5 13.9 11.9 17 17 A I H S+ 0 0 51 -4,-0.5 4,-2.7 1,-0.2 -1,-0.2 0.815 105.7 51.0 -62.9 -31.8 24.6 14.5 9.6 19 19 A C H <4 S+ 0 0 54 -3,-0.8 -1,-0.2 2,-0.2 -2,-0.2 0.889 109.5 49.9 -70.8 -40.4 23.5 10.9 9.7 20 20 A I H < S+ 0 0 2 -4,-1.5 -2,-0.2 1,-0.1 11,-0.2 0.891 118.3 38.9 -63.9 -40.9 21.8 11.2 6.3 21 21 A I H < S- 0 0 49 -4,-2.3 7,-1.9 6,-0.2 6,-0.9 0.958 95.3-171.5 -75.6 -53.3 25.0 12.8 4.8 22 22 A G >< - 0 0 16 -4,-2.7 3,-2.0 5,-0.2 2,-0.2 -0.057 42.5 -29.0 81.0 171.2 27.6 10.7 6.5 23 23 A R G > S- 0 0 219 1,-0.3 3,-2.1 2,-0.2 4,-0.1 -0.417 136.3 -7.9 -58.8 121.7 31.4 11.0 6.6 24 24 A Q G 3 S- 0 0 201 1,-0.3 -1,-0.3 -2,-0.2 -2,-0.1 0.714 126.6 -67.4 60.8 21.0 32.5 12.7 3.4 25 25 A G G <> S+ 0 0 19 -3,-2.0 4,-2.2 -7,-0.1 -1,-0.3 0.678 97.3 140.5 71.8 21.1 28.9 12.4 2.1 26 26 A A H <> + 0 0 50 -3,-2.1 4,-2.2 2,-0.2 -4,-0.2 0.884 67.5 49.1 -61.9 -41.4 29.3 8.6 2.0 27 27 A N H > S+ 0 0 40 -6,-0.9 4,-1.9 2,-0.2 -5,-0.2 0.952 113.0 44.2 -66.4 -49.8 25.8 7.9 3.3 28 28 A I H > S+ 0 0 6 -7,-1.9 4,-2.3 1,-0.2 -1,-0.2 0.868 111.8 55.5 -67.1 -34.9 23.9 10.2 0.9 29 29 A N H X S+ 0 0 76 -4,-2.2 4,-2.9 -8,-0.4 -1,-0.2 0.932 107.6 48.9 -56.0 -51.0 26.1 8.9 -1.9 30 30 A E H X S+ 0 0 73 -4,-2.2 4,-2.7 2,-0.2 5,-0.2 0.847 110.3 50.8 -53.8 -44.1 25.0 5.3 -1.1 31 31 A I H X S+ 0 0 0 -4,-1.9 4,-2.2 2,-0.2 6,-0.4 0.911 112.2 47.1 -66.1 -42.6 21.3 6.3 -1.0 32 32 A R H X S+ 0 0 78 -4,-2.3 4,-2.2 2,-0.2 5,-0.4 0.948 115.2 45.7 -59.1 -52.5 21.6 8.0 -4.4 33 33 A Q H < S+ 0 0 147 -4,-2.9 -2,-0.2 1,-0.2 -1,-0.2 0.894 117.0 43.4 -59.1 -45.4 23.5 5.0 -5.9 34 34 A M H < S+ 0 0 109 -4,-2.7 -1,-0.2 1,-0.2 -2,-0.2 0.894 120.7 39.4 -68.5 -41.4 21.0 2.4 -4.5 35 35 A S H < S- 0 0 9 -4,-2.2 30,-0.2 -5,-0.2 -2,-0.2 0.765 91.8-138.2 -83.8 -27.8 17.8 4.3 -5.3 36 36 A G < + 0 0 63 -4,-2.2 2,-0.3 1,-0.3 -3,-0.1 0.588 63.0 126.6 73.2 11.1 18.8 5.7 -8.7 37 37 A A - 0 0 6 -5,-0.4 2,-0.5 -6,-0.4 -1,-0.3 -0.719 66.9-118.7 -95.8 149.6 17.1 8.9 -7.6 38 38 A Q E -B 56 0A 103 18,-2.5 18,-2.5 -2,-0.3 2,-0.5 -0.791 35.6-170.1 -82.8 127.7 18.7 12.4 -7.7 39 39 A I E -B 55 0A 1 -2,-0.5 2,-0.4 16,-0.2 16,-0.2 -0.980 6.5-174.6-128.7 120.7 18.7 13.6 -4.1 40 40 A K E -B 54 0A 103 14,-2.5 14,-2.2 -2,-0.5 2,-0.5 -0.959 17.2-143.7-121.7 129.6 19.6 17.2 -3.1 41 41 A I E -B 53 0A 42 -2,-0.4 12,-0.2 12,-0.2 11,-0.0 -0.791 28.1-124.1 -89.1 127.9 20.0 18.7 0.4 42 42 A A - 0 0 35 10,-3.0 3,-0.1 -2,-0.5 -1,-0.0 -0.317 35.3 -87.2 -68.3 151.7 18.8 22.3 0.6 43 43 A N - 0 0 145 1,-0.1 9,-0.2 8,-0.1 -1,-0.1 -0.315 52.7-108.6 -51.4 135.2 21.0 25.1 1.9 44 44 A P - 0 0 90 0, 0.0 2,-0.4 0, 0.0 -1,-0.1 -0.461 30.0-152.9 -72.4 146.2 20.9 25.2 5.6 45 45 A V > - 0 0 95 -2,-0.1 3,-1.4 -3,-0.1 2,-0.0 -0.978 24.1-106.8-119.4 136.0 19.0 28.2 7.3 46 46 A E T 3 S+ 0 0 196 -2,-0.4 3,-0.1 1,-0.2 0, 0.0 -0.315 100.7 13.3 -60.5 134.5 19.9 29.6 10.7 47 47 A G T 3 S+ 0 0 74 1,-0.3 -1,-0.2 2,-0.0 2,-0.2 0.668 90.3 133.7 71.2 20.2 17.2 28.8 13.4 48 48 A S < - 0 0 39 -3,-1.4 -1,-0.3 1,-0.1 3,-0.1 -0.613 47.9-152.6 -86.7 158.1 15.4 26.1 11.4 49 49 A S S S+ 0 0 106 -2,-0.2 -35,-2.9 1,-0.1 -34,-0.3 0.621 77.1 39.4-100.8 -18.2 14.5 22.8 13.1 50 50 A G E -A 13 0A 18 -37,-0.3 2,-0.5 -36,-0.1 -1,-0.1 -0.892 69.9-134.5-132.1 156.1 14.5 20.8 9.9 51 51 A R E -A 12 0A 41 -39,-3.4 -39,-3.2 -2,-0.3 2,-0.2 -0.965 25.2-129.0-114.7 127.9 16.5 20.5 6.6 52 52 A Q E -A 11 0A 105 -2,-0.5 -10,-3.0 -41,-0.2 2,-0.4 -0.498 22.2-171.4 -77.3 144.5 14.7 20.2 3.3 53 53 A V E -AB 10 41A 3 -43,-2.5 -43,-2.3 -12,-0.2 2,-0.4 -0.998 7.5-156.3-136.3 124.4 15.6 17.5 0.8 54 54 A T E -AB 9 40A 53 -14,-2.2 -14,-2.5 -2,-0.4 2,-0.4 -0.864 6.6-165.5-100.8 146.1 14.3 17.2 -2.8 55 55 A I E -AB 8 39A 0 -47,-2.4 -47,-2.7 -2,-0.4 2,-0.4 -0.993 4.3-172.8-132.8 121.9 14.2 13.8 -4.6 56 56 A T E +AB 7 38A 24 -18,-2.5 -18,-2.5 -2,-0.4 2,-0.3 -0.924 38.3 77.3-120.5 145.0 13.7 13.6 -8.4 57 57 A G E S-A 6 0A 4 -51,-1.8 -51,-2.7 -2,-0.4 -20,-0.1 -0.953 84.9 -35.0 150.8-168.1 13.1 10.3 -10.4 58 58 A S > - 0 0 35 -2,-0.3 4,-2.3 -53,-0.2 5,-0.2 -0.382 64.7-102.7 -74.3 166.5 10.3 8.0 -11.1 59 59 A A H > S+ 0 0 72 -55,-0.4 4,-2.6 1,-0.2 5,-0.2 0.879 123.0 54.4 -54.5 -38.7 7.7 7.3 -8.3 60 60 A A H > S+ 0 0 75 2,-0.2 4,-2.4 1,-0.2 -1,-0.2 0.932 109.6 43.6 -62.9 -47.8 9.5 3.9 -7.7 61 61 A S H > S+ 0 0 16 2,-0.2 4,-2.7 1,-0.2 -24,-0.3 0.866 114.3 51.1 -71.6 -30.7 13.0 5.4 -7.2 62 62 A I H X S+ 0 0 9 -4,-2.3 4,-2.5 2,-0.2 -2,-0.2 0.941 110.5 48.7 -67.8 -45.9 11.6 8.2 -5.0 63 63 A S H X S+ 0 0 73 -4,-2.6 4,-2.5 -5,-0.2 -2,-0.2 0.925 113.4 47.7 -58.7 -42.9 9.8 5.7 -2.8 64 64 A L H X S+ 0 0 72 -4,-2.4 4,-2.6 2,-0.2 -2,-0.2 0.931 110.5 51.5 -62.0 -47.8 13.0 3.6 -2.6 65 65 A A H X S+ 0 0 0 -4,-2.7 4,-2.1 2,-0.2 -2,-0.2 0.898 111.1 48.2 -55.5 -43.6 15.1 6.7 -1.8 66 66 A Q H X S+ 0 0 61 -4,-2.5 4,-2.5 2,-0.2 -2,-0.2 0.924 110.8 50.6 -63.7 -47.5 12.6 7.6 1.0 67 67 A Y H X S+ 0 0 158 -4,-2.5 4,-2.3 1,-0.2 -2,-0.2 0.910 111.7 48.1 -53.2 -45.1 12.7 4.1 2.4 68 68 A L H X S+ 0 0 29 -4,-2.6 4,-2.1 2,-0.2 -2,-0.2 0.842 108.5 53.7 -67.7 -34.8 16.6 4.2 2.4 69 69 A I H X S+ 0 0 2 -4,-2.1 4,-1.2 2,-0.2 -2,-0.2 0.956 111.9 45.5 -63.2 -51.0 16.5 7.6 4.1 70 70 A N H < S+ 0 0 98 -4,-2.5 3,-0.3 1,-0.2 -2,-0.2 0.875 111.5 52.1 -54.5 -46.3 14.3 6.1 6.9 71 71 A A H >< S+ 0 0 48 -4,-2.3 3,-1.4 1,-0.2 -1,-0.2 0.845 105.7 55.0 -60.1 -38.5 16.5 3.0 7.1 72 72 A R H 3< S+ 0 0 63 -4,-2.1 -1,-0.2 1,-0.3 -2,-0.2 0.805 103.0 57.5 -66.1 -29.9 19.6 5.1 7.5 73 73 A L T 3< 0 0 56 -4,-1.2 -1,-0.3 -3,-0.3 -2,-0.2 0.352 360.0 360.0 -85.4 4.2 17.9 6.8 10.5 74 74 A S < 0 0 143 -3,-1.4 -3,-0.0 -4,-0.0 -4,-0.0 -0.927 360.0 360.0-101.9 360.0 17.5 3.5 12.3