==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=19-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSFERASE 22-DEC-04 1WVO . COMPND 2 MOLECULE: SIALIC ACID SYNTHASE; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR Y.ITO,T.HAMADA,F.HAYASHI,S.YOKOYAMA,H.HIROTA,RIKEN . 79 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5957.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 43 54.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 13 16.5 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 11 13.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 10 12.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 2 2.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 4 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 130 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 164.0 -21.5 -16.1 -0.5 2 2 A S + 0 0 131 2,-0.0 0, 0.0 0, 0.0 0, 0.0 0.953 360.0 84.0 -80.8 -55.6 -19.0 -15.5 -3.4 3 3 A S + 0 0 116 2,-0.1 2,-0.2 1,-0.1 0, 0.0 -0.210 49.2 163.4 -53.1 132.0 -19.7 -11.7 -4.0 4 4 A G - 0 0 49 27,-0.1 2,-1.3 3,-0.0 3,-0.4 -0.679 23.5-169.2-158.3 90.1 -17.7 -9.6 -1.6 5 5 A S + 0 0 69 1,-0.2 26,-1.5 -2,-0.2 27,-0.2 -0.194 33.4 150.0 -75.0 41.0 -17.4 -5.9 -2.6 6 6 A S - 0 0 58 -2,-1.3 -1,-0.2 24,-0.2 2,-0.1 0.820 45.0-145.8 -45.1 -38.2 -14.7 -5.6 0.3 7 7 A G - 0 0 0 -3,-0.4 2,-0.3 23,-0.3 23,-0.3 -0.438 10.4 -80.5 96.1-173.8 -13.0 -2.9 -1.7 8 8 A S E -A 29 0A 6 21,-1.2 21,-2.4 -2,-0.1 2,-0.9 -0.916 41.7 -98.8-129.1 151.3 -9.4 -1.9 -2.1 9 9 A V E -A 28 0A 0 27,-2.2 50,-1.1 -2,-0.3 27,-0.4 -0.630 47.4-178.1 -75.2 105.7 -7.1 0.1 0.1 10 10 A V E -AB 27 58A 5 17,-1.2 17,-1.9 -2,-0.9 48,-0.2 -0.718 36.0 -95.1-102.9 152.8 -7.0 3.6 -1.4 11 11 A A E -A 26 0A 0 46,-2.3 45,-2.0 -2,-0.3 15,-0.3 -0.469 24.6-152.9 -65.6 128.3 -4.9 6.6 -0.1 12 12 A K S S+ 0 0 99 13,-2.4 2,-0.3 -2,-0.2 14,-0.2 0.725 80.1 4.3 -75.9 -23.9 -7.0 8.7 2.3 13 13 A V S S- 0 0 57 12,-0.8 2,-0.3 41,-0.2 44,-0.1 -0.875 104.0 -64.6-148.1 173.3 -4.9 11.8 1.4 14 14 A K - 0 0 108 -2,-0.3 40,-0.3 41,-0.1 41,-0.1 -0.540 46.5-157.7 -67.4 127.9 -2.0 12.6 -1.0 15 15 A I B -C 53 0B 0 38,-1.3 38,-2.4 -2,-0.3 36,-0.1 -0.901 12.9-142.8-111.5 96.4 1.0 10.5 0.2 16 16 A P > - 0 0 65 0, 0.0 3,-1.5 0, 0.0 33,-0.2 -0.306 33.6 -87.0 -61.1 145.3 4.2 12.3 -1.2 17 17 A E T 3 S+ 0 0 119 1,-0.2 33,-0.2 33,-0.1 35,-0.1 -0.054 112.9 30.8 -50.8 146.2 7.0 10.0 -2.4 18 18 A G T 3 S+ 0 0 24 31,-2.1 2,-0.2 1,-0.3 -1,-0.2 0.350 90.3 127.4 82.5 -3.6 9.5 8.7 0.3 19 19 A T < - 0 0 49 -3,-1.5 30,-1.9 -4,-0.1 2,-0.3 -0.611 60.2-123.4 -88.2 143.8 6.8 8.8 3.0 20 20 A I B -D 48 0C 78 -2,-0.2 28,-0.2 28,-0.2 2,-0.1 -0.651 32.4-110.2 -84.0 140.2 6.1 5.8 5.3 21 21 A L + 0 0 2 26,-2.8 2,-0.3 23,-0.4 -1,-0.1 -0.388 37.8 173.9 -73.8 149.4 2.5 4.5 5.3 22 22 A T > - 0 0 60 23,-0.2 3,-1.4 -2,-0.1 4,-0.1 -0.938 44.9-112.3-146.9 157.4 0.2 4.8 8.4 23 23 A M G > S+ 0 0 79 -2,-0.3 3,-1.5 1,-0.3 -11,-0.1 0.789 114.0 69.3 -67.6 -24.1 -3.5 4.0 8.9 24 24 A D G 3 S+ 0 0 140 1,-0.3 -1,-0.3 -12,-0.0 -3,-0.0 0.632 103.9 42.7 -67.7 -12.7 -4.1 7.8 9.3 25 25 A M G < S+ 0 0 34 -3,-1.4 -13,-2.4 -13,-0.1 -12,-0.8 0.223 110.7 69.0-115.4 10.8 -3.3 8.2 5.5 26 26 A L E < +A 11 0A 8 -3,-1.5 2,-0.3 -15,-0.3 -15,-0.2 -0.885 45.3 164.4-132.2 161.8 -5.3 5.1 4.3 27 27 A T E -A 10 0A 44 -17,-1.9 -17,-1.2 -2,-0.3 2,-0.5 -0.912 35.7-114.2-159.3 170.9 -8.9 3.8 3.9 28 28 A V E -A 9 0A 50 -19,-0.3 2,-1.3 -2,-0.3 -19,-0.3 -0.973 19.9-143.4-125.4 110.9 -10.6 0.9 2.0 29 29 A K E > -A 8 0A 112 -21,-2.4 -21,-1.2 -2,-0.5 3,-0.7 -0.687 22.4-140.2 -76.7 91.7 -13.0 2.0 -0.8 30 30 A V T 3 S+ 0 0 120 -2,-1.3 -23,-0.3 -23,-0.3 -24,-0.2 -0.363 74.0 73.0 -54.5 125.5 -15.7 -0.6 -0.4 31 31 A G T 3 S+ 0 0 40 -26,-1.5 -1,-0.2 -27,-0.1 -25,-0.1 -0.279 97.0 6.7 161.7 -61.7 -16.8 -1.6 -3.9 32 32 A E < - 0 0 98 -3,-0.7 2,-1.6 -27,-0.2 -27,-0.1 -0.993 63.2-118.2-148.7 148.6 -14.2 -3.8 -5.8 33 33 A P + 0 0 96 0, 0.0 2,-1.1 0, 0.0 -25,-0.1 -0.236 60.5 145.7 -80.5 44.0 -10.9 -5.5 -4.9 34 34 A K - 0 0 118 -2,-1.6 2,-0.4 2,-0.1 -26,-0.1 -0.782 67.7 -1.8 -84.8 92.8 -9.2 -3.2 -7.6 35 35 A G S S+ 0 0 26 -2,-1.1 25,-0.1 23,-0.1 26,-0.1 -0.994 121.6 1.2 132.1-132.6 -5.7 -2.7 -6.0 36 36 A Y S S- 0 0 22 23,-0.6 -27,-2.2 -2,-0.4 23,-0.1 -0.756 74.3-114.7 -94.0 139.9 -4.5 -4.0 -2.6 37 37 A P - 0 0 47 0, 0.0 4,-0.3 0, 0.0 3,-0.2 -0.451 11.7-131.7 -75.2 148.8 -6.8 -6.1 -0.4 38 38 A P S S+ 0 0 35 0, 0.0 4,-0.1 0, 0.0 -30,-0.1 0.456 104.1 67.6 -76.0 -0.8 -8.0 -4.8 3.0 39 39 A E S S+ 0 0 154 1,-0.1 3,-0.5 2,-0.1 -3,-0.0 0.918 105.3 36.8 -81.5 -49.8 -6.9 -8.2 4.5 40 40 A D S >> S+ 0 0 79 -3,-0.2 3,-1.9 1,-0.2 4,-0.6 0.346 85.4 117.5 -85.7 6.3 -3.1 -7.6 4.0 41 41 A I H >> + 0 0 16 1,-0.3 4,-1.3 -4,-0.3 3,-1.2 0.783 65.6 61.6 -44.1 -41.7 -3.6 -3.9 4.8 42 42 A F H 34 S+ 0 0 148 -3,-0.5 -1,-0.3 1,-0.3 -2,-0.1 0.838 95.5 61.2 -60.5 -32.6 -1.3 -4.1 7.9 43 43 A N H <4 S+ 0 0 79 -3,-1.9 -1,-0.3 1,-0.2 -2,-0.2 0.778 103.0 51.8 -63.6 -30.4 1.7 -5.1 5.7 44 44 A L H X< S+ 0 0 0 -3,-1.2 3,-2.7 -4,-0.6 2,-1.3 0.865 88.1 87.1 -71.9 -42.6 1.3 -1.8 3.9 45 45 A V T 3< S+ 0 0 51 -4,-1.3 -23,-0.2 1,-0.3 -1,-0.1 -0.506 97.9 28.6 -67.2 93.7 1.4 0.2 7.1 46 46 A G T 3 S+ 0 0 46 -2,-1.3 -1,-0.3 1,-0.5 -2,-0.1 0.168 96.0 109.5 137.0 -11.7 5.2 0.6 7.5 47 47 A K < - 0 0 16 -3,-2.7 -26,-2.8 20,-0.1 -1,-0.5 -0.422 65.0-121.2 -84.4 166.4 6.3 0.5 3.8 48 48 A K B -D 20 0C 101 -28,-0.2 17,-2.0 18,-0.2 2,-0.2 -0.877 22.5-123.3-110.3 139.6 7.6 3.5 1.8 49 49 A V B -E 64 0D 3 -30,-1.9 -31,-2.1 -2,-0.4 15,-0.3 -0.586 7.8-155.9 -82.0 150.3 5.9 4.8 -1.3 50 50 A L S S+ 0 0 94 13,-2.9 2,-0.3 -2,-0.2 14,-0.1 0.455 78.9 31.1-101.0 -10.4 7.9 5.2 -4.6 51 51 A V S S- 0 0 69 12,-0.5 2,-1.0 -36,-0.1 -33,-0.1 -0.950 94.1 -92.7-144.4 160.6 5.6 7.9 -6.1 52 52 A T - 0 0 67 -2,-0.3 2,-0.1 -36,-0.2 -38,-0.0 -0.698 45.9-154.6 -78.7 99.9 3.5 10.8 -4.8 53 53 A V B -C 15 0B 3 -38,-2.4 -38,-1.3 -2,-1.0 2,-0.2 -0.501 8.7-135.5 -73.2 150.4 0.1 9.2 -4.4 54 54 A E > - 0 0 120 -40,-0.3 3,-1.5 -2,-0.1 -43,-0.2 -0.538 35.3 -72.9-102.5 168.1 -2.9 11.5 -4.6 55 55 A E T 3 S+ 0 0 130 1,-0.2 -43,-0.2 -2,-0.2 -1,-0.1 -0.383 117.3 5.5 -61.5 144.2 -6.0 11.6 -2.4 56 56 A D T 3 S+ 0 0 105 -45,-2.0 -1,-0.2 1,-0.2 -44,-0.1 0.492 97.7 145.8 56.9 13.1 -8.5 8.7 -2.9 57 57 A D < - 0 0 73 -3,-1.5 -46,-2.3 -46,-0.1 2,-0.6 -0.370 57.1-102.6 -78.3 153.7 -6.0 7.1 -5.4 58 58 A T B -B 10 0A 49 -48,-0.2 2,-0.2 -2,-0.1 -48,-0.2 -0.665 32.6-145.1 -81.4 113.1 -5.6 3.3 -5.8 59 59 A I - 0 0 1 -50,-1.1 -23,-0.6 -2,-0.6 2,-0.3 -0.568 20.5-172.1 -76.9 144.3 -2.4 2.0 -4.0 60 60 A M > - 0 0 77 -2,-0.2 3,-1.1 -25,-0.1 4,-0.2 -0.882 36.5-113.0-134.5 161.2 -0.6 -0.9 -5.7 61 61 A E G > S+ 0 0 118 -2,-0.3 3,-1.2 1,-0.2 -1,-0.1 0.826 115.1 59.7 -67.5 -29.1 2.4 -3.3 -4.8 62 62 A E G 3 S+ 0 0 155 1,-0.3 -1,-0.2 -12,-0.0 -3,-0.0 0.603 99.2 59.6 -74.0 -11.3 4.6 -1.7 -7.6 63 63 A L G < S+ 0 0 42 -3,-1.1 -13,-2.9 2,-0.1 -12,-0.5 0.411 100.0 63.5 -94.6 -4.4 4.2 1.7 -5.9 64 64 A V B < S-E 49 0D 10 -3,-1.2 -15,-0.2 -15,-0.3 3,-0.1 -0.959 82.4-124.1-122.5 140.4 5.8 0.5 -2.6 65 65 A D - 0 0 98 -17,-2.0 -17,-0.2 -2,-0.4 3,-0.1 -0.353 39.7 -93.4 -74.3 165.2 9.3 -0.7 -2.0 66 66 A N - 0 0 122 1,-0.2 -18,-0.2 -19,-0.1 -1,-0.1 -0.129 56.0 -75.6 -68.8 170.1 9.9 -4.1 -0.5 67 67 A H - 0 0 94 1,-0.1 2,-0.3 -20,-0.1 -1,-0.2 -0.402 32.0-145.9 -68.1 151.5 10.4 -4.5 3.3 68 68 A G + 0 0 90 1,-0.1 -1,-0.1 -3,-0.1 3,-0.0 -0.601 66.6 107.8-116.8 59.1 13.8 -3.5 4.7 69 69 A K + 0 0 178 -2,-0.3 -1,-0.1 3,-0.1 2,-0.0 0.847 46.4 86.1 -99.1 -65.0 13.9 -6.2 7.4 70 70 A K S S- 0 0 173 1,-0.2 2,-1.6 -3,-0.1 4,-0.1 -0.229 70.0-140.5 -50.1 122.0 16.4 -8.8 6.4 71 71 A I S S+ 0 0 170 2,-0.1 2,-0.3 -3,-0.0 -1,-0.2 -0.214 74.3 84.9 -74.9 39.6 19.9 -7.9 7.5 72 72 A K S S- 0 0 155 -2,-1.6 2,-0.9 2,-0.1 -3,-0.1 -0.978 79.7-118.3-151.7 142.0 21.4 -9.3 4.2 73 73 A S + 0 0 121 -2,-0.3 2,-0.3 0, 0.0 -2,-0.1 -0.649 67.6 110.9 -80.0 100.1 22.0 -8.2 0.6 74 74 A S + 0 0 111 -2,-0.9 -2,-0.1 1,-0.1 -4,-0.0 -0.937 21.6 93.9-163.0 159.3 19.9 -10.6 -1.6 75 75 A G - 0 0 68 -2,-0.3 2,-0.2 2,-0.1 -1,-0.1 0.586 55.0-136.8 112.2 93.0 16.8 -10.3 -3.8 76 76 A P - 0 0 129 0, 0.0 -2,-0.0 0, 0.0 0, 0.0 -0.500 35.7 -91.5 -74.8 150.2 17.2 -9.8 -7.5 77 77 A S - 0 0 109 -2,-0.2 -2,-0.1 1,-0.1 0, 0.0 -0.244 22.6-155.8 -62.0 143.7 14.9 -7.3 -9.2 78 78 A S 0 0 134 -3,-0.1 -1,-0.1 0, 0.0 -3,-0.0 0.481 360.0 360.0 -94.3 -10.3 11.7 -8.6 -10.7 79 79 A G 0 0 105 0, 0.0 -2,-0.0 0, 0.0 0, 0.0 0.666 360.0 360.0 -99.5 360.0 11.6 -5.6 -13.1