==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=19-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER LIGASE 18-JAN-05 1WWT . COMPND 2 MOLECULE: THREONYL-TRNA SYNTHETASE, CYTOPLASMIC; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR E.CHIKAYAMA,T.KIGAWA,T.TOMIZAWA,S.KOSHIBA,M.INOUE, . 88 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6619.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 40 45.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 3 3.4 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 13 14.8 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 7 8.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 6 6.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 7 8.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 134 0, 0.0 2,-0.7 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0-168.5 -15.4 9.6 -12.0 2 2 A S - 0 0 126 1,-0.1 3,-0.1 3,-0.0 2,-0.1 -0.677 360.0-112.3 -80.2 114.2 -14.8 10.6 -8.4 3 3 A S - 0 0 105 -2,-0.7 2,-0.3 1,-0.1 -1,-0.1 -0.242 36.6-115.2 -48.4 112.7 -11.1 10.3 -7.6 4 4 A G + 0 0 54 -2,-0.1 2,-0.4 1,-0.1 -1,-0.1 -0.367 48.0 165.4 -57.4 115.6 -11.0 7.4 -5.1 5 5 A S - 0 0 95 -2,-0.3 -1,-0.1 1,-0.1 -2,-0.0 -0.852 64.3 -42.5-140.8 100.7 -9.8 8.9 -1.9 6 6 A S + 0 0 93 -2,-0.4 2,-0.3 1,-0.2 -1,-0.1 0.915 69.8 172.5 41.4 90.6 -10.2 6.8 1.3 7 7 A G - 0 0 56 1,-0.1 -1,-0.2 -3,-0.1 -3,-0.0 -0.668 63.2 -53.0-129.7 76.6 -13.7 5.4 0.9 8 8 A D S S- 0 0 154 -2,-0.3 -1,-0.1 19,-0.0 18,-0.1 0.928 72.9-110.7 54.8 98.3 -14.3 2.9 3.6 9 9 A S - 0 0 48 18,-0.1 18,-0.1 16,-0.1 54,-0.0 0.137 39.0-166.7 -46.9 172.0 -11.5 0.4 3.5 10 10 A K - 0 0 95 16,-0.3 16,-2.6 0, 0.0 2,-0.7 -0.976 31.5 -85.8-162.9 158.2 -12.2 -3.1 2.4 11 11 A P E +A 25 0A 99 0, 0.0 14,-0.3 0, 0.0 2,-0.2 -0.614 53.3 178.0 -74.9 110.1 -10.6 -6.6 2.3 12 12 A I E -A 24 0A 7 12,-2.5 12,-3.1 -2,-0.7 2,-0.4 -0.544 23.8-123.4-106.4 173.6 -8.4 -6.8 -0.7 13 13 A K E -A 23 0A 101 10,-0.2 53,-1.6 -2,-0.2 2,-0.5 -0.973 16.9-166.5-123.6 135.3 -6.1 -9.5 -2.1 14 14 A V E -Ab 22 66A 1 8,-2.2 8,-1.9 -2,-0.4 2,-0.5 -0.975 10.6-149.9-125.3 117.4 -2.4 -9.2 -2.8 15 15 A T E -Ab 21 67A 37 51,-1.2 53,-2.6 -2,-0.5 6,-0.3 -0.746 21.6-123.4 -89.2 126.9 -0.7 -11.8 -4.9 16 16 A L > - 0 0 21 4,-2.7 3,-1.4 -2,-0.5 53,-0.1 -0.173 22.1-112.9 -62.8 160.3 3.0 -12.3 -4.1 17 17 A P T 3 S+ 0 0 58 0, 0.0 -1,-0.1 0, 0.0 52,-0.1 0.423 119.1 58.6 -75.0 1.8 5.6 -12.0 -6.8 18 18 A D T 3 S- 0 0 152 2,-0.2 3,-0.1 0, 0.0 51,-0.1 0.480 125.8-100.0-105.2 -9.5 6.2 -15.7 -6.4 19 19 A G S < S+ 0 0 48 -3,-1.4 -3,-0.1 1,-0.4 0, 0.0 -0.102 83.4 127.2 115.4 -32.1 2.6 -16.6 -7.1 20 20 A K - 0 0 147 -5,-0.1 -4,-2.7 1,-0.1 -1,-0.4 -0.051 51.9-134.0 -53.0 160.0 1.5 -17.0 -3.6 21 21 A Q E -A 15 0A 119 -6,-0.3 2,-0.3 -3,-0.1 -6,-0.2 -0.922 21.9-178.2-123.6 148.5 -1.6 -15.1 -2.4 22 22 A V E -A 14 0A 49 -8,-1.9 -8,-2.2 -2,-0.3 2,-0.4 -0.898 26.5-112.5-139.1 166.6 -2.2 -13.0 0.7 23 23 A D E +A 13 0A 121 -2,-0.3 2,-0.3 -10,-0.2 -10,-0.2 -0.879 40.6 159.6-106.6 134.5 -5.0 -11.0 2.3 24 24 A A E -A 12 0A 2 -12,-3.1 -12,-2.5 -2,-0.4 2,-0.4 -0.810 29.9-124.9-140.6 179.3 -4.8 -7.2 2.6 25 25 A E E >> -A 11 0A 75 -14,-0.3 4,-2.7 -2,-0.3 3,-1.7 -0.999 29.0-107.1-136.8 137.3 -7.0 -4.2 3.1 26 26 A S T 34 S- 0 0 4 -16,-2.6 -16,-0.3 -2,-0.4 37,-0.2 -0.405 106.6 -0.4 -63.1 129.9 -7.4 -1.1 1.0 27 27 A W T 34 S+ 0 0 75 35,-1.7 -1,-0.3 2,-0.3 -18,-0.1 0.873 130.3 72.8 56.1 38.1 -5.8 1.9 2.8 28 28 A K T <4 S+ 0 0 127 -3,-1.7 2,-0.3 1,-0.6 -2,-0.2 0.438 90.9 38.4-141.0 -56.9 -5.0 -0.6 5.6 29 29 A T < - 0 0 26 -4,-2.7 33,-1.6 33,-0.0 -1,-0.6 -0.762 65.3-159.1-106.9 152.9 -2.2 -2.9 4.6 30 30 A T > - 0 0 12 -2,-0.3 4,-1.9 31,-0.3 28,-0.1 -0.711 33.4-108.4-123.2 174.4 0.9 -2.0 2.5 31 31 A P H > S+ 0 0 0 0, 0.0 4,-1.3 0, 0.0 5,-0.2 0.695 116.7 60.8 -75.0 -20.5 3.5 -3.9 0.4 32 32 A Y H > S+ 0 0 116 26,-0.9 4,-2.4 25,-0.2 11,-0.1 0.845 107.9 42.5 -73.7 -36.0 6.0 -3.3 3.2 33 33 A Q H > S+ 0 0 108 25,-0.3 4,-3.9 2,-0.2 5,-0.2 0.943 107.7 57.8 -74.7 -51.4 4.0 -5.2 5.7 34 34 A I H X S+ 0 0 15 -4,-1.9 4,-0.8 1,-0.2 -2,-0.2 0.886 116.1 38.4 -44.5 -47.1 3.0 -8.1 3.4 35 35 A A H >< S+ 0 0 2 -4,-1.3 3,-1.8 2,-0.2 8,-0.2 0.962 111.5 56.4 -69.3 -54.1 6.7 -8.7 2.9 36 36 A C H 3< S+ 0 0 39 -4,-2.4 -2,-0.2 1,-0.3 -1,-0.2 0.886 97.4 66.7 -43.1 -46.7 7.7 -7.9 6.5 37 37 A G H 3< S+ 0 0 71 -4,-3.9 -1,-0.3 -5,-0.1 -2,-0.2 0.869 91.4 76.0 -41.8 -48.1 5.2 -10.7 7.4 38 38 A I S << S- 0 0 58 -3,-1.8 5,-0.2 -4,-0.8 3,-0.2 -0.077 115.5 -46.7 -61.1 167.4 7.5 -13.2 5.7 39 39 A S S > S- 0 0 103 1,-0.2 3,-2.0 2,-0.1 4,-0.2 -0.077 79.0 -95.1 -39.2 122.9 10.7 -14.3 7.5 40 40 A Q T 3 S+ 0 0 163 1,-0.2 -1,-0.2 -3,-0.2 -4,-0.1 -0.201 112.6 47.2 -47.5 122.9 12.3 -11.1 8.8 41 41 A G T 3> S+ 0 0 30 -3,-0.2 4,-1.4 -5,-0.0 -1,-0.2 -0.106 84.7 87.2 133.4 -34.2 14.9 -10.1 6.1 42 42 A L T X4 S+ 0 0 75 -3,-2.0 3,-1.2 1,-0.2 -6,-0.1 0.971 98.1 38.5 -57.5 -58.7 12.8 -10.3 3.0 43 43 A A G >4 S+ 0 0 7 1,-0.3 3,-0.8 -8,-0.2 -1,-0.2 0.770 107.7 68.3 -63.1 -25.9 11.4 -6.8 3.3 44 44 A D G 34 S+ 0 0 145 1,-0.3 2,-0.7 -9,-0.1 -1,-0.3 0.843 99.1 50.5 -61.4 -34.4 14.9 -5.9 4.5 45 45 A N G << S+ 0 0 137 -4,-1.4 -1,-0.3 -3,-1.2 2,-0.3 -0.497 95.9 104.3-103.2 60.4 16.1 -6.6 1.0 46 46 A T < + 0 0 26 -3,-0.8 26,-0.1 -2,-0.7 3,-0.1 -0.819 36.6 172.8-133.2 172.0 13.6 -4.5 -0.8 47 47 A V + 0 0 32 24,-0.4 2,-0.5 -2,-0.3 11,-0.3 0.296 68.2 4.3-140.0 -83.6 13.3 -1.2 -2.6 48 48 A I - 0 0 6 9,-0.1 23,-1.0 10,-0.1 2,-0.4 -0.977 63.6-142.6-121.8 128.3 10.1 -0.2 -4.4 49 49 A A E -CD 56 70B 0 7,-1.1 7,-2.8 -2,-0.5 2,-0.5 -0.725 13.2-139.3 -90.8 136.2 7.0 -2.4 -4.4 50 50 A K E -CD 55 69B 59 19,-2.4 19,-0.8 -2,-0.4 2,-0.7 -0.848 11.7-163.4 -99.0 125.6 5.0 -2.6 -7.6 51 51 A V E S- D 0 68B 4 3,-3.7 17,-0.2 -2,-0.5 6,-0.0 -0.889 80.9 -13.5-112.4 100.6 1.2 -2.6 -7.2 52 52 A N S S- 0 0 95 15,-1.7 -1,-0.2 -2,-0.7 16,-0.1 0.781 131.1 -53.1 79.8 29.6 -0.4 -3.8 -10.4 53 53 A N S S+ 0 0 133 14,-0.4 2,-0.4 1,-0.3 -1,-0.2 0.732 120.0 113.4 75.6 23.7 2.8 -3.5 -12.3 54 54 A V S S- 0 0 63 0, 0.0 -3,-3.7 0, 0.0 -1,-0.3 -0.987 79.8 -95.8-130.8 139.2 3.1 0.1 -11.1 55 55 A V E -C 50 0B 64 -2,-0.4 2,-0.3 -5,-0.3 -5,-0.2 -0.258 49.0-177.2 -52.4 129.5 5.6 1.6 -8.8 56 56 A W E -C 49 0B 31 -7,-2.8 -7,-1.1 -25,-0.0 2,-0.3 -0.971 25.1-117.2-134.1 147.8 4.1 1.7 -5.3 57 57 A D - 0 0 69 -2,-0.3 -25,-0.2 -9,-0.2 3,-0.1 -0.606 11.6-139.7 -85.3 144.4 5.5 3.1 -2.1 58 58 A L S S+ 0 0 23 -11,-0.3 -26,-0.9 -2,-0.3 -25,-0.3 0.793 109.6 48.7 -70.7 -29.2 6.2 0.7 0.8 59 59 A D S S+ 0 0 150 -28,-0.1 -1,-0.2 -27,-0.1 -2,-0.0 0.619 99.1 85.2 -83.5 -15.1 4.8 3.4 3.2 60 60 A R S S- 0 0 119 -3,-0.1 -28,-0.2 1,-0.0 2,-0.1 -0.797 80.0-132.0 -93.7 125.2 1.8 3.7 0.9 61 61 A P - 0 0 33 0, 0.0 -31,-0.3 0, 0.0 -4,-0.1 -0.442 30.2 -98.5 -75.0 147.3 -1.0 1.1 1.4 62 62 A L - 0 0 0 -33,-1.6 -35,-1.7 -37,-0.2 -34,-0.2 0.126 21.4-143.9 -52.5 177.2 -2.5 -0.7 -1.5 63 63 A E - 0 0 70 1,-0.5 2,-0.3 -37,-0.2 -37,-0.1 0.664 63.7 -41.1-116.4 -36.3 -5.7 0.5 -3.1 64 64 A E S S- 0 0 94 -39,-0.1 -1,-0.5 -51,-0.1 -52,-0.1 -0.962 98.0 -15.9-175.4-177.6 -7.4 -2.8 -4.0 65 65 A D S S+ 0 0 98 -2,-0.3 2,-0.3 -54,-0.1 -51,-0.2 -0.124 83.2 134.1 -40.5 110.3 -6.9 -6.3 -5.5 66 66 A C E -b 14 0A 10 -53,-1.6 -51,-1.2 -3,-0.0 2,-0.4 -0.888 54.6 -94.1-152.1 178.4 -3.5 -5.9 -7.1 67 67 A T E -b 15 0A 67 -2,-0.3 -15,-1.7 -53,-0.2 2,-0.4 -0.827 28.0-142.9-106.7 143.9 -0.2 -7.7 -7.4 68 68 A L E +D 51 0B 2 -53,-2.6 2,-0.3 -2,-0.4 -17,-0.2 -0.881 20.1 174.2-108.0 136.6 2.8 -7.1 -5.2 69 69 A E E -D 50 0B 85 -19,-0.8 -19,-2.4 -2,-0.4 2,-0.3 -0.908 19.7-147.0-146.2 113.0 6.4 -7.2 -6.6 70 70 A L E -D 49 0B 25 -2,-0.3 2,-0.2 -21,-0.2 -21,-0.2 -0.628 19.0-137.5 -81.3 134.1 9.5 -6.3 -4.6 71 71 A L - 0 0 31 -23,-1.0 -24,-0.4 -2,-0.3 3,-0.1 -0.584 7.6-139.5 -90.6 154.2 12.2 -4.7 -6.6 72 72 A K S S- 0 0 186 1,-0.4 2,-0.2 -2,-0.2 -1,-0.1 0.791 77.8 -39.2 -80.2 -30.8 15.9 -5.6 -6.2 73 73 A F S S- 0 0 131 -25,-0.1 -1,-0.4 2,-0.0 -26,-0.1 -0.849 74.4 -67.9 171.7 153.6 16.9 -2.0 -6.5 74 74 A E - 0 0 46 -2,-0.2 2,-0.1 -3,-0.1 7,-0.0 0.062 39.6-168.6 -47.4 164.1 16.2 1.3 -8.3 75 75 A D - 0 0 141 0, 0.0 -1,-0.1 0, 0.0 -2,-0.0 -0.564 66.7 -19.2-164.3 90.2 17.0 1.5 -12.0 76 76 A E S S+ 0 0 188 1,-0.3 2,-0.3 -2,-0.1 -2,-0.0 0.995 102.6 108.8 71.3 70.6 17.0 4.9 -13.7 77 77 A E + 0 0 88 2,-0.0 2,-0.3 -3,-0.0 -1,-0.3 -0.943 36.0 177.9-170.6 150.8 14.9 7.0 -11.3 78 78 A A + 0 0 73 -2,-0.3 2,-2.8 -4,-0.0 3,-0.0 -0.961 62.7 25.8-153.7 165.0 15.1 9.8 -8.8 79 79 A Q S S+ 0 0 191 -2,-0.3 2,-1.4 1,-0.1 -2,-0.0 -0.321 99.4 87.1 76.0 -57.8 13.0 11.9 -6.5 80 80 A A + 0 0 54 -2,-2.8 2,-0.3 -23,-0.0 -1,-0.1 -0.617 69.9 97.5 -77.6 93.3 10.4 9.1 -6.3 81 81 A V S S- 0 0 47 -2,-1.4 -33,-0.1 -7,-0.0 -24,-0.1 -0.948 78.7 -70.4-172.1 155.9 11.8 7.1 -3.4 82 82 A Y - 0 0 170 -2,-0.3 2,-0.4 -35,-0.2 -3,-0.1 0.127 46.7-128.7 -45.5 167.9 11.5 6.5 0.3 83 83 A S - 0 0 95 0, 0.0 -1,-0.1 0, 0.0 0, 0.0 -0.994 24.6-103.5-131.7 127.2 12.6 9.2 2.7 84 84 A G - 0 0 63 -2,-0.4 3,-0.1 4,-0.1 4,-0.1 -0.264 46.4-151.6 -49.9 105.9 14.9 8.8 5.6 85 85 A P - 0 0 99 0, 0.0 -1,-0.1 0, 0.0 2,-0.0 -0.128 30.8 -68.8 -75.0 175.9 12.5 8.8 8.6 86 86 A S S S+ 0 0 110 1,-0.1 0, 0.0 2,-0.1 0, 0.0 -0.341 112.6 29.1 -66.7 147.0 13.2 10.0 12.1 87 87 A S 0 0 125 1,-0.2 -1,-0.1 -3,-0.1 0, 0.0 0.987 360.0 360.0 64.6 83.3 15.6 7.8 14.1 88 88 A G 0 0 113 -4,-0.1 -1,-0.2 0, 0.0 -2,-0.1 -0.698 360.0 360.0 105.9 360.0 17.8 6.1 11.6