==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=19-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 20-JAN-05 1WX9 . COMPND 2 MOLECULE: HLA-B ASSOCIATED TRANSCRIPT-3 ISOFORM B; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR C.ZHAO,K.SAITO,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA,RIKEN . 86 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5992.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 53 61.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 4 4.7 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 14 16.3 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 9 10.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 9 10.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 12 14.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 2 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 120 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0-144.7 -4.3 -19.4 -6.4 2 2 A S - 0 0 132 1,-0.1 2,-0.2 3,-0.0 21,-0.0 0.937 360.0-164.1 55.5 97.1 -0.9 -17.8 -7.1 3 3 A S + 0 0 126 3,-0.0 3,-0.3 2,-0.0 -1,-0.1 -0.648 45.1 30.5-108.0 166.1 1.6 -20.5 -7.8 4 4 A G S S- 0 0 63 -2,-0.2 2,-1.7 1,-0.2 0, 0.0 0.560 88.0 -93.1 61.0 141.2 5.4 -20.5 -7.9 5 5 A S S S+ 0 0 143 1,-0.0 2,-0.4 2,-0.0 -1,-0.2 -0.605 78.2 128.3 -87.5 77.6 7.4 -18.1 -5.7 6 6 A S + 0 0 117 -2,-1.7 2,-0.3 -3,-0.3 -3,-0.0 -0.914 39.3 60.7-138.7 108.3 7.8 -15.3 -8.1 7 7 A G S S- 0 0 51 -2,-0.4 2,-0.4 18,-0.1 18,-0.2 -0.891 76.7 -77.2 159.5 173.6 6.9 -11.7 -7.1 8 8 A L E -A 24 0A 32 16,-2.2 16,-2.1 -2,-0.3 2,-0.3 -0.851 38.7-134.2-103.8 135.9 7.6 -8.9 -4.8 9 9 A E E -A 23 0A 71 -2,-0.4 61,-3.7 14,-0.2 62,-0.5 -0.691 22.6-177.3 -90.2 139.8 6.3 -8.9 -1.2 10 10 A V E -Ab 22 71A 0 12,-2.8 12,-1.7 -2,-0.3 2,-0.3 -0.981 8.4-158.4-141.4 124.7 4.7 -5.8 0.2 11 11 A L E -Ab 21 72A 25 60,-2.4 62,-2.1 57,-0.5 2,-0.4 -0.677 2.5-156.8-100.8 156.1 3.4 -5.3 3.8 12 12 A V E -Ab 20 73A 1 8,-0.6 8,-1.0 -2,-0.3 2,-0.7 -0.964 2.8-165.7-138.2 117.6 0.9 -2.8 4.9 13 13 A K E -A 19 0A 78 60,-3.0 62,-0.4 -2,-0.4 6,-0.2 -0.897 14.7-162.3-107.2 107.0 0.6 -1.6 8.5 14 14 A T > - 0 0 36 4,-1.0 3,-0.8 -2,-0.7 2,-0.6 0.057 42.6 -82.5 -72.5-171.9 -2.7 0.2 9.1 15 15 A L T 3 S+ 0 0 151 1,-0.2 -1,-0.1 2,-0.1 61,-0.0 -0.236 124.7 57.8 -89.6 44.4 -3.4 2.6 12.0 16 16 A D T 3 S- 0 0 126 -2,-0.6 -1,-0.2 2,-0.0 -2,-0.1 -0.002 119.6 -94.5-162.0 34.6 -4.2 -0.4 14.2 17 17 A S S < S+ 0 0 90 -3,-0.8 2,-0.2 1,-0.1 -2,-0.1 0.937 74.8 143.7 42.1 75.9 -1.0 -2.5 14.2 18 18 A Q - 0 0 93 -4,-0.3 -4,-1.0 2,-0.0 2,-0.4 -0.680 28.0-171.2-146.4 85.8 -2.1 -4.8 11.3 19 19 A T E -A 13 0A 67 -2,-0.2 2,-0.5 -6,-0.2 -6,-0.2 -0.660 4.6-173.8 -82.5 129.5 0.7 -5.9 9.0 20 20 A R E -A 12 0A 89 -8,-1.0 -8,-0.6 -2,-0.4 2,-0.2 -0.973 16.7-139.3-129.6 117.3 -0.5 -7.7 5.9 21 21 A T E -A 11 0A 71 -2,-0.5 2,-0.4 -10,-0.2 -10,-0.3 -0.517 21.8-169.8 -75.2 138.6 2.0 -9.2 3.4 22 22 A F E -A 10 0A 19 -12,-1.7 -12,-2.8 -2,-0.2 2,-0.7 -0.993 16.6-150.9-134.2 139.2 1.1 -8.9 -0.3 23 23 A I E +A 9 0A 98 -2,-0.4 2,-0.3 -14,-0.2 -14,-0.2 -0.907 33.3 153.7-112.5 104.3 2.6 -10.4 -3.4 24 24 A V E -A 8 0A 8 -16,-2.1 -16,-2.2 -2,-0.7 2,-0.3 -0.841 52.3 -81.0-126.4 163.3 2.3 -8.2 -6.4 25 25 A G > - 0 0 39 -2,-0.3 3,-1.5 -18,-0.2 38,-0.2 -0.491 32.4-135.0 -67.5 122.8 4.2 -7.8 -9.6 26 26 A A T 3 S+ 0 0 26 -2,-0.3 38,-0.7 1,-0.3 39,-0.3 0.809 109.9 58.2 -45.3 -32.8 7.3 -5.7 -9.1 27 27 A Q T 3 S+ 0 0 142 37,-0.1 -1,-0.3 36,-0.1 38,-0.1 0.892 83.6 105.9 -65.4 -41.5 6.1 -4.0 -12.3 28 28 A M S < S- 0 0 34 -3,-1.5 35,-0.8 34,-0.1 36,-0.4 0.066 70.5-125.7 -38.1 148.7 2.8 -3.1 -10.7 29 29 A N B > -C 62 0B 28 33,-0.2 4,-2.6 34,-0.1 33,-0.3 -0.485 21.0-105.1 -97.6 170.4 2.4 0.5 -9.8 30 30 A V H > S+ 0 0 0 31,-3.6 4,-2.3 29,-0.7 29,-0.2 0.945 120.0 51.4 -58.5 -51.3 1.4 2.1 -6.5 31 31 A K H >> S+ 0 0 76 28,-1.5 4,-1.8 30,-0.4 3,-0.9 0.965 111.2 45.8 -48.6 -67.6 -2.1 2.9 -7.7 32 32 A E H >> S+ 0 0 95 1,-0.3 4,-2.3 2,-0.2 3,-0.9 0.910 109.5 55.2 -40.6 -60.8 -2.7 -0.7 -9.0 33 33 A F H 3X S+ 0 0 0 -4,-2.6 4,-3.2 1,-0.3 5,-0.4 0.854 105.8 53.3 -41.5 -45.1 -1.4 -2.1 -5.8 34 34 A K H X S+ 0 0 92 -4,-2.3 3,-1.3 -5,-0.2 4,-0.6 0.979 119.9 32.4 -68.9 -59.2 -5.3 -4.9 -5.3 37 37 A I H 3X>S+ 0 0 0 -4,-3.2 4,-2.5 1,-0.3 5,-0.8 0.781 99.6 85.5 -68.0 -27.4 -5.1 -4.5 -1.6 38 38 A A H 3X5S+ 0 0 18 -4,-2.5 4,-0.9 -5,-0.4 -1,-0.3 0.789 89.2 54.1 -42.9 -30.7 -8.1 -2.3 -1.8 39 39 A A H <45S+ 0 0 77 -3,-1.3 -1,-0.3 -4,-0.4 -2,-0.2 0.974 115.5 34.4 -69.1 -57.3 -9.9 -5.6 -1.7 40 40 A S H <5S+ 0 0 75 -4,-0.6 -2,-0.2 1,-0.2 -3,-0.1 0.985 124.6 42.0 -60.8 -62.1 -8.3 -6.8 1.5 41 41 A V H <5S- 0 0 18 -4,-2.5 -1,-0.2 2,-0.1 -3,-0.2 0.820 100.6-142.1 -54.6 -32.1 -8.0 -3.4 3.2 42 42 A S << + 0 0 104 -4,-0.9 -3,-0.2 -5,-0.8 -4,-0.2 0.629 60.9 122.5 76.2 14.5 -11.5 -2.8 1.8 43 43 A I - 0 0 32 -6,-0.2 -1,-0.3 -9,-0.1 2,-0.1 -0.899 65.0-117.5-112.9 140.2 -10.5 0.7 1.2 44 44 A P >> - 0 0 49 0, 0.0 4,-2.2 0, 0.0 3,-1.6 -0.459 20.8-122.9 -75.0 145.4 -10.6 2.5 -2.2 45 45 A S T 34 S+ 0 0 13 1,-0.3 3,-0.4 2,-0.3 -10,-0.0 0.935 114.8 57.3 -49.6 -55.1 -7.3 3.7 -3.7 46 46 A E T 34 S+ 0 0 159 1,-0.3 -1,-0.3 3,-0.0 -15,-0.0 0.742 115.0 40.4 -48.9 -24.2 -8.6 7.2 -4.0 47 47 A K T <4 S+ 0 0 79 -3,-1.6 31,-1.8 31,-0.1 -1,-0.3 0.713 107.5 78.9 -95.3 -27.9 -9.1 6.8 -0.2 48 48 A Q < - 0 0 8 -4,-2.2 29,-0.1 -3,-0.4 27,-0.1 -0.216 52.6-179.3 -75.8 170.1 -5.8 4.9 0.2 49 49 A R - 0 0 119 27,-0.1 27,-0.4 2,-0.0 9,-0.1 -0.346 19.0-145.8-174.4 81.5 -2.4 6.6 0.4 50 50 A L - 0 0 0 25,-0.2 7,-2.4 7,-0.1 2,-0.4 -0.317 21.6-166.9 -55.9 128.0 0.7 4.4 0.8 51 51 A I E +DE 56 74C 27 23,-1.7 23,-2.8 5,-0.2 2,-0.4 -0.976 11.5 175.3-124.9 135.8 3.2 6.3 2.9 52 52 A Y E > -D 55 0C 57 3,-2.5 3,-0.9 -2,-0.4 21,-0.1 -0.982 69.9 -3.2-144.1 128.1 6.9 5.4 3.4 53 53 A Q T 3 S- 0 0 172 -2,-0.4 3,-0.1 1,-0.3 -1,-0.1 0.745 130.6 -57.9 65.2 23.9 9.6 7.3 5.2 54 54 A G T 3 S+ 0 0 74 1,-0.3 2,-0.3 20,-0.0 -1,-0.3 0.718 115.9 118.1 77.7 23.0 7.0 10.0 5.9 55 55 A R E < -D 52 0C 173 -3,-0.9 -3,-2.5 3,-0.0 2,-0.8 -0.909 69.2-118.3-123.3 150.5 6.5 10.4 2.1 56 56 A V E -D 51 0C 49 -2,-0.3 -5,-0.2 -5,-0.2 2,-0.1 -0.790 32.2-128.5 -90.9 110.7 3.4 9.9 -0.0 57 57 A L - 0 0 7 -7,-2.4 -7,-0.1 -2,-0.8 2,-0.1 -0.376 27.7-118.2 -59.7 127.2 4.1 7.1 -2.5 58 58 A Q - 0 0 74 1,-0.1 -28,-0.4 -2,-0.1 -27,-0.1 -0.369 9.0-137.8 -68.7 146.5 3.2 8.4 -6.0 59 59 A D S S+ 0 0 76 1,-0.2 -28,-1.5 -29,-0.2 -29,-0.7 0.956 106.9 48.1 -68.3 -52.8 0.5 6.6 -7.9 60 60 A D S S+ 0 0 143 -30,-0.1 -1,-0.2 -31,-0.1 -2,-0.0 0.798 102.5 87.1 -57.3 -29.2 2.4 6.6 -11.2 61 61 A K S S- 0 0 71 -32,-0.1 -31,-3.6 1,-0.1 -30,-0.4 -0.177 77.6-130.0 -67.3 165.2 5.3 5.4 -9.2 62 62 A K B > -C 29 0B 76 -33,-0.3 4,-1.4 -32,-0.1 -33,-0.2 -0.825 14.5-119.9-118.8 158.1 5.8 1.7 -8.5 63 63 A L H >>>S+ 0 0 2 -35,-0.8 4,-2.3 -2,-0.3 3,-1.1 0.972 114.2 51.1 -57.7 -58.7 6.5 -0.3 -5.4 64 64 A Q H 345S+ 0 0 104 -38,-0.7 -1,-0.2 -36,-0.4 5,-0.2 0.903 101.6 62.6 -44.0 -52.9 9.8 -1.7 -6.6 65 65 A E H 345S+ 0 0 118 -39,-0.3 -1,-0.3 1,-0.3 -2,-0.2 0.869 111.8 37.3 -40.1 -49.1 10.9 1.8 -7.5 66 66 A Y H <<5S- 0 0 47 -4,-1.4 -1,-0.3 -3,-1.1 -2,-0.2 0.805 110.1-128.9 -74.7 -31.6 10.6 2.7 -3.8 67 67 A N T <5 + 0 0 107 -4,-2.3 -3,-0.2 -5,-0.2 -2,-0.1 0.908 51.8 154.3 81.5 47.4 11.9 -0.7 -2.9 68 68 A V > < + 0 0 1 -5,-0.9 3,-2.2 3,-0.1 -57,-0.5 0.129 20.8 147.2 -91.1 18.9 9.2 -1.5 -0.4 69 69 A G T 3 S- 0 0 28 1,-0.3 -59,-0.2 -5,-0.2 3,-0.1 -0.408 82.1 -11.0 -60.9 120.0 9.9 -5.2 -1.1 70 70 A G T 3 S+ 0 0 36 -61,-3.7 -1,-0.3 -2,-0.3 -60,-0.2 0.608 114.2 128.5 63.6 11.2 9.2 -7.1 2.1 71 71 A K E < -b 10 0A 99 -3,-2.2 -60,-2.4 -62,-0.5 2,-0.7 -0.495 65.6-114.3 -94.1 166.0 9.0 -3.7 3.7 72 72 A V E -b 11 0A 54 -2,-0.2 -60,-0.2 -62,-0.1 2,-0.2 -0.903 32.7-164.9-106.6 110.5 6.2 -2.4 5.9 73 73 A I E -b 12 0A 0 -62,-2.1 -60,-3.0 -2,-0.7 2,-0.7 -0.477 18.6-126.2 -89.7 163.1 4.3 0.5 4.3 74 74 A H B -E 51 0C 93 -23,-2.8 -23,-1.7 -62,-0.2 2,-0.3 -0.891 26.0-168.8-115.4 99.9 2.0 2.9 6.1 75 75 A L - 0 0 5 -2,-0.7 2,-0.4 -62,-0.4 -25,-0.2 -0.692 3.2-162.4 -89.7 139.4 -1.4 3.1 4.5 76 76 A V - 0 0 42 -27,-0.4 2,-0.5 -2,-0.3 -27,-0.1 -0.951 10.8-139.6-124.2 143.2 -3.8 5.8 5.5 77 77 A E - 0 0 56 -2,-0.4 4,-0.2 -29,-0.1 -29,-0.2 -0.901 24.8-120.7-106.1 124.1 -7.5 6.0 5.0 78 78 A R S S+ 0 0 189 -31,-1.8 -31,-0.1 -2,-0.5 -1,-0.1 -0.038 78.2 24.3 -54.2 162.0 -9.0 9.4 4.1 79 79 A A S S- 0 0 55 1,-0.1 2,-0.6 2,-0.1 -2,-0.1 0.286 112.0 -53.0 60.6 162.6 -11.7 10.8 6.3 80 80 A P - 0 0 129 0, 0.0 -2,-0.1 0, 0.0 -1,-0.1 -0.609 61.5-131.1 -75.0 115.2 -12.0 10.0 10.0 81 81 A S - 0 0 82 -2,-0.6 -2,-0.1 -4,-0.2 -3,-0.0 -0.324 23.9-110.1 -65.4 146.8 -12.2 6.2 10.4 82 82 A G - 0 0 41 1,-0.1 -1,-0.1 2,-0.0 0, 0.0 -0.515 13.5-146.1 -80.6 147.3 -14.9 4.8 12.6 83 83 A P S S+ 0 0 136 0, 0.0 -1,-0.1 0, 0.0 -2,-0.0 0.962 98.2 32.8 -75.0 -56.4 -14.1 3.2 15.9 84 84 A S S S- 0 0 113 2,-0.0 -2,-0.0 0, 0.0 0, 0.0 0.985 85.5-172.4 -63.4 -61.5 -16.9 0.5 15.9 85 85 A S 0 0 101 1,-0.1 -4,-0.0 -4,-0.0 0, 0.0 0.946 360.0 360.0 62.2 95.3 -16.9 -0.1 12.2 86 86 A G 0 0 130 0, 0.0 -1,-0.1 0, 0.0 -2,-0.0 0.484 360.0 360.0 101.1 360.0 -19.9 -2.3 11.4