==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=19-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSCRIPTION 25-FEB-05 1WZ6 . COMPND 2 MOLECULE: HMG-BOX TRANSCRIPTION FACTOR BBX; . SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; . AUTHOR H.LI,N.TOCHIO,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA,RIKEN . 82 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7187.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 49 59.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 6 7.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 4 4.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 38 46.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 122 0, 0.0 2,-0.6 0, 0.0 3,-0.2 0.000 360.0 360.0 360.0-136.1 -9.9 -0.4 -18.9 2 2 A S + 0 0 133 1,-0.2 4,-0.1 2,-0.1 0, 0.0 -0.739 360.0 132.6-116.6 80.5 -11.7 2.7 -20.3 3 3 A S S S- 0 0 131 -2,-0.6 -1,-0.2 2,-0.3 3,-0.1 0.912 84.6 -62.8 -90.6 -58.4 -15.0 1.5 -21.6 4 4 A G S S+ 0 0 65 1,-0.3 2,-0.2 -3,-0.2 -2,-0.1 0.118 102.6 71.2 167.3 58.6 -17.4 4.1 -20.2 5 5 A S - 0 0 121 2,-0.0 2,-0.8 0, 0.0 -1,-0.3 -0.819 68.4-119.7 178.8 140.8 -17.5 4.2 -16.4 6 6 A S - 0 0 115 -2,-0.2 -4,-0.1 -3,-0.1 0, 0.0 -0.821 41.3-117.3 -94.9 108.4 -15.4 5.2 -13.5 7 7 A G - 0 0 65 -2,-0.8 3,-0.1 1,-0.1 -1,-0.1 0.086 23.9-112.2 -38.3 151.9 -14.7 2.3 -11.3 8 8 A A S S- 0 0 105 1,-0.2 2,-0.2 -3,-0.0 -1,-0.1 0.965 79.6 -51.8 -53.8 -59.1 -16.0 2.5 -7.7 9 9 A R - 0 0 212 0, 0.0 -1,-0.2 0, 0.0 -3,-0.0 -0.656 50.5-134.9 174.2 126.7 -12.6 2.8 -6.2 10 10 A R - 0 0 171 -2,-0.2 3,-0.1 -3,-0.1 55,-0.0 -0.466 15.3-132.9 -87.8 161.5 -9.4 0.7 -6.4 11 11 A P - 0 0 26 0, 0.0 2,-0.3 0, 0.0 -1,-0.1 0.948 52.8 -72.9 -75.0 -89.2 -7.2 -0.3 -3.5 12 12 A M - 0 0 30 49,-0.2 2,-0.3 48,-0.1 53,-0.1 -0.875 35.0-135.4-157.9-172.6 -3.5 0.5 -4.2 13 13 A N > - 0 0 82 -2,-0.3 4,-2.4 -3,-0.1 5,-0.2 -0.958 41.4 -91.4-152.6 165.3 -0.5 -0.6 -6.2 14 14 A A H > S+ 0 0 11 -2,-0.3 4,-1.2 1,-0.2 44,-0.1 0.834 133.1 38.3 -47.5 -35.8 3.2 -1.1 -5.8 15 15 A F H > S+ 0 0 66 2,-0.2 4,-1.8 1,-0.2 -1,-0.2 0.907 111.6 54.3 -81.8 -47.3 3.5 2.5 -6.8 16 16 A L H > S+ 0 0 65 1,-0.2 4,-1.2 2,-0.2 -2,-0.2 0.694 108.4 56.0 -59.9 -17.9 0.5 3.8 -4.9 17 17 A L H X S+ 0 0 10 -4,-2.4 4,-0.8 2,-0.2 -1,-0.2 0.917 104.7 47.5 -79.3 -48.2 2.2 2.2 -1.9 18 18 A F H X S+ 0 0 4 -4,-1.2 4,-3.0 -5,-0.2 -2,-0.2 0.754 112.7 52.1 -63.8 -25.1 5.4 4.0 -2.2 19 19 A C H X S+ 0 0 10 -4,-1.8 4,-1.7 2,-0.2 -1,-0.2 0.852 107.5 50.0 -78.2 -37.4 3.4 7.2 -2.6 20 20 A K H < S+ 0 0 115 -4,-1.2 -2,-0.2 -5,-0.2 4,-0.2 0.605 119.3 40.9 -74.8 -12.1 1.4 6.4 0.5 21 21 A R H < S+ 0 0 128 -4,-0.8 4,-0.4 2,-0.1 -2,-0.2 0.805 125.0 32.4-100.5 -43.7 4.8 5.9 2.2 22 22 A H H X S+ 0 0 39 -4,-3.0 4,-2.8 1,-0.2 5,-0.3 0.556 93.5 99.7 -89.1 -11.2 6.8 8.7 0.7 23 23 A R H X S+ 0 0 83 -4,-1.7 4,-3.0 1,-0.3 5,-0.3 0.894 88.3 39.7 -37.1 -63.2 3.6 10.8 0.6 24 24 A S H > S+ 0 0 76 -3,-0.2 4,-3.6 -4,-0.2 -1,-0.3 0.924 111.7 59.3 -54.9 -48.9 4.6 12.7 3.8 25 25 A L H > S+ 0 0 90 -4,-0.4 4,-3.1 2,-0.2 5,-0.3 0.934 114.7 34.7 -43.7 -62.5 8.2 12.8 2.6 26 26 A V H X S+ 0 0 0 -4,-2.8 4,-2.8 2,-0.2 -2,-0.2 0.985 115.5 54.2 -57.0 -64.4 7.3 14.7 -0.5 27 27 A R H < S+ 0 0 105 -4,-3.0 -1,-0.2 -5,-0.3 -2,-0.2 0.813 114.2 46.2 -38.5 -38.8 4.5 16.7 1.1 28 28 A Q H < S+ 0 0 137 -4,-3.6 -1,-0.2 -5,-0.3 -2,-0.2 0.976 114.1 42.9 -70.1 -58.8 7.2 17.6 3.6 29 29 A E H < S+ 0 0 132 -4,-3.1 -2,-0.2 1,-0.3 -1,-0.2 0.633 137.5 20.5 -62.4 -13.0 9.9 18.5 1.2 30 30 A H < + 0 0 61 -4,-2.8 -1,-0.3 -5,-0.3 -2,-0.2 -0.511 68.3 154.3-159.1 80.1 7.2 20.2 -0.7 31 31 A P S S+ 0 0 95 0, 0.0 7,-0.1 0, 0.0 -3,-0.1 0.904 77.5 57.9 -75.0 -44.6 4.1 21.1 1.3 32 32 A R S S+ 0 0 235 -4,-0.2 5,-0.1 5,-0.0 -5,-0.1 0.842 88.5 101.3 -53.3 -36.2 3.0 24.0 -0.9 33 33 A L S S- 0 0 71 -6,-0.1 2,-0.2 -7,-0.1 -3,-0.0 0.103 74.5-121.0 -43.7 165.4 2.9 21.5 -3.8 34 34 A D >> - 0 0 117 1,-0.0 4,-3.3 0, 0.0 5,-0.7 -0.693 30.5 -93.2-112.2 166.0 -0.5 20.2 -4.8 35 35 A N T 45S+ 0 0 101 1,-0.3 4,-0.3 -2,-0.2 -2,-0.1 0.759 134.6 44.2 -46.7 -25.6 -1.9 16.7 -4.9 36 36 A R T >5S+ 0 0 192 2,-0.1 4,-0.6 3,-0.1 -1,-0.3 0.838 116.4 44.0 -87.5 -39.2 -0.7 16.8 -8.4 37 37 A G H >>5S+ 0 0 16 2,-0.2 4,-1.3 1,-0.2 3,-1.1 0.960 115.8 45.0 -69.6 -54.2 2.6 18.4 -7.7 38 38 A A H 3X5S+ 0 0 3 -4,-3.3 4,-1.8 1,-0.3 -1,-0.2 0.810 114.1 52.7 -59.2 -30.3 3.5 16.2 -4.7 39 39 A T H 3>X S+ 0 0 38 -4,-1.4 4,-4.2 2,-0.2 3,-0.8 0.952 108.5 40.2 -46.0 -65.9 6.4 9.5 -9.5 44 44 A D H 3X S+ 0 0 85 -4,-1.1 4,-2.9 1,-0.3 -1,-0.2 0.934 110.8 58.1 -49.0 -54.6 10.0 10.2 -10.1 45 45 A W H 3< S+ 0 0 70 -4,-2.4 -1,-0.3 1,-0.2 -2,-0.2 0.861 115.9 37.8 -43.5 -40.8 10.9 8.9 -6.7 46 46 A W H X< S+ 0 0 38 -4,-2.7 3,-1.7 -3,-0.8 -2,-0.3 0.946 108.7 59.7 -76.0 -52.4 9.2 5.7 -7.8 47 47 A A H 3< S+ 0 0 73 -4,-4.2 -2,-0.2 1,-0.3 -1,-0.2 0.774 109.0 49.6 -45.8 -27.8 10.6 5.9 -11.4 48 48 A V T 3< S+ 0 0 98 -4,-2.9 2,-0.4 -5,-0.3 -1,-0.3 -0.387 90.1 118.8-109.8 51.2 13.9 5.8 -9.6 49 49 A L < - 0 0 24 -3,-1.7 -3,-0.1 -2,-0.1 -4,-0.0 -0.926 59.0-125.3-120.0 143.8 13.1 2.8 -7.4 50 50 A D > - 0 0 111 -2,-0.4 4,-1.6 1,-0.1 5,-0.0 -0.152 24.6-111.9 -76.3 176.4 14.8 -0.5 -7.3 51 51 A P H > S+ 0 0 83 0, 0.0 4,-4.5 0, 0.0 5,-0.2 0.950 112.1 60.8 -75.0 -53.1 13.1 -3.9 -7.8 52 52 A K H > S+ 0 0 173 1,-0.3 4,-2.0 2,-0.2 5,-0.2 0.869 111.7 42.7 -39.4 -48.5 13.6 -5.2 -4.2 53 53 A E H > S+ 0 0 80 2,-0.2 4,-2.5 1,-0.2 -1,-0.3 0.942 114.0 49.2 -65.2 -50.1 11.6 -2.2 -3.1 54 54 A K H X S+ 0 0 63 -4,-1.6 4,-4.4 2,-0.2 -2,-0.2 0.882 108.5 57.6 -56.3 -40.5 9.0 -2.6 -5.9 55 55 A Q H X S+ 0 0 123 -4,-4.5 4,-2.9 2,-0.2 5,-0.2 0.978 107.6 42.6 -53.1 -67.5 8.8 -6.2 -5.0 56 56 A K H X S+ 0 0 96 -4,-2.0 4,-2.2 1,-0.2 -1,-0.2 0.886 118.7 48.6 -46.3 -45.7 7.8 -5.7 -1.4 57 57 A Y H X S+ 0 0 6 -4,-2.5 4,-2.3 1,-0.2 -1,-0.2 0.936 108.5 51.7 -61.0 -50.0 5.5 -3.0 -2.7 58 58 A T H X S+ 0 0 61 -4,-4.4 4,-3.9 1,-0.2 5,-0.2 0.878 109.1 52.1 -54.3 -41.4 4.0 -5.2 -5.4 59 59 A D H X S+ 0 0 60 -4,-2.9 4,-1.6 2,-0.2 -1,-0.2 0.927 107.1 52.1 -61.1 -47.0 3.3 -7.8 -2.7 60 60 A M H X S+ 0 0 39 -4,-2.2 4,-3.2 -5,-0.2 -1,-0.2 0.884 116.2 40.3 -56.2 -42.3 1.5 -5.3 -0.6 61 61 A A H X S+ 0 0 7 -4,-2.3 4,-3.9 2,-0.2 5,-0.4 0.931 113.8 51.5 -72.3 -48.2 -0.6 -4.3 -3.5 62 62 A K H X S+ 0 0 112 -4,-3.9 4,-0.7 1,-0.2 -2,-0.2 0.705 119.9 39.8 -61.1 -19.1 -1.1 -7.9 -4.7 63 63 A E H X S+ 0 0 113 -4,-1.6 4,-1.7 -5,-0.2 -2,-0.2 0.809 117.0 46.2 -96.5 -40.5 -2.1 -8.5 -1.1 64 64 A Y H X S+ 0 0 116 -4,-3.2 4,-1.7 -5,-0.2 -2,-0.2 0.854 115.4 48.2 -70.3 -36.7 -4.1 -5.4 -0.5 65 65 A K H X S+ 0 0 82 -4,-3.9 4,-3.5 2,-0.2 3,-0.3 0.983 107.9 52.2 -66.7 -59.9 -5.9 -5.8 -3.9 66 66 A D H < S+ 0 0 108 -4,-0.7 -2,-0.2 -5,-0.4 -1,-0.2 0.893 107.5 55.0 -41.2 -52.3 -6.8 -9.4 -3.4 67 67 A A H < S+ 0 0 78 -4,-1.7 -1,-0.3 1,-0.2 -2,-0.2 0.931 113.0 41.1 -47.3 -55.3 -8.3 -8.5 -0.1 68 68 A F H < S+ 0 0 106 -4,-1.7 3,-0.4 -3,-0.3 -2,-0.2 0.924 91.8 99.5 -59.7 -48.0 -10.5 -6.0 -1.7 69 69 A M < + 0 0 52 -4,-3.5 6,-0.0 1,-0.2 -4,-0.0 -0.202 44.9 112.6 -45.9 109.8 -11.3 -8.2 -4.6 70 70 A K + 0 0 195 -2,-0.0 2,-1.3 0, 0.0 -1,-0.2 0.352 69.8 40.3-143.7 -68.4 -14.7 -9.7 -3.8 71 71 A A S S+ 0 0 93 -3,-0.4 -2,-0.1 1,-0.0 -3,-0.0 -0.533 83.0 121.4 -93.2 66.6 -17.5 -8.6 -6.0 72 72 A N + 0 0 61 -2,-1.3 3,-0.2 1,-0.1 -1,-0.0 -0.875 27.3 168.3-134.8 99.8 -15.5 -8.8 -9.2 73 73 A P S S+ 0 0 126 0, 0.0 2,-1.5 0, 0.0 -1,-0.1 0.905 76.2 58.5 -75.0 -44.7 -16.8 -11.1 -11.9 74 74 A G S S+ 0 0 79 2,-0.0 2,-0.2 0, 0.0 0, 0.0 -0.618 83.9 124.5 -89.2 78.3 -14.6 -9.9 -14.7 75 75 A Y - 0 0 143 -2,-1.5 2,-0.4 -3,-0.2 -3,-0.0 -0.755 50.3-129.8-128.8 175.1 -11.2 -10.6 -13.1 76 76 A R + 0 0 222 -2,-0.2 2,-0.1 2,-0.0 -2,-0.0 -0.970 32.3 146.0-131.3 145.7 -8.0 -12.5 -13.8 77 77 A S - 0 0 87 -2,-0.4 -2,-0.0 2,-0.0 0, 0.0 -0.453 24.4-158.2 179.9 98.9 -6.0 -15.0 -11.8 78 78 A G > - 0 0 38 -2,-0.1 2,-1.3 1,-0.1 3,-0.8 -0.445 37.6 -93.8 -83.3 157.9 -4.1 -18.0 -13.2 79 79 A P T 3 S+ 0 0 143 0, 0.0 3,-0.1 0, 0.0 -1,-0.1 -0.592 98.9 81.8 -75.0 95.5 -3.1 -21.1 -11.2 80 80 A S T 3 S+ 0 0 110 -2,-1.3 2,-0.7 1,-0.1 -3,-0.0 0.275 81.0 49.9-157.5 -50.1 0.4 -20.2 -10.0 81 81 A S < 0 0 104 -3,-0.8 -1,-0.1 1,-0.0 0, 0.0 -0.910 360.0 360.0-110.7 107.5 0.3 -18.0 -7.0 82 82 A G 0 0 132 -2,-0.7 -1,-0.0 -3,-0.1 0, 0.0 -0.293 360.0 360.0-150.9 360.0 -2.0 -19.4 -4.2