==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=20-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RNA BINDING PROTEIN 14-MAY-05 1X48 . COMPND 2 MOLECULE: INTERFERON-INDUCED, DOUBLE-STRANDED RNA- . SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; . AUTHOR F.HE,Y.MUTO,M.INOUE,T.TARADA,M.SHIROUZU,T.KIGAWA,S.YOKOYAMA, . 88 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6855.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 54 61.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 14 15.9 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 8 9.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 6 6.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 25 28.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 127 0, 0.0 2,-0.3 0, 0.0 3,-0.1 0.000 360.0 360.0 360.0-160.2 -6.8 -5.0 -18.1 2 2 A S + 0 0 108 2,-0.3 0, 0.0 1,-0.2 0, 0.0 -0.939 360.0 41.2-152.3 171.7 -3.3 -3.6 -17.5 3 3 A S S S- 0 0 90 -2,-0.3 5,-0.2 4,-0.1 -1,-0.2 0.936 125.1 -26.7 49.3 54.5 -0.5 -3.2 -14.9 4 4 A G S S- 0 0 49 1,-0.1 -2,-0.3 -3,-0.1 4,-0.0 0.163 81.6 -83.0 89.7 150.5 -1.1 -6.8 -13.7 5 5 A S S S- 0 0 145 1,-0.1 -1,-0.1 -4,-0.1 -3,-0.1 0.829 126.0 -4.1 -56.3 -33.0 -4.1 -9.0 -13.7 6 6 A S S S- 0 0 116 -3,-0.1 2,-0.1 -5,-0.1 -1,-0.1 0.612 105.0-123.5-127.4 -44.5 -5.3 -7.2 -10.5 7 7 A G >> - 0 0 13 1,-0.1 4,-0.8 2,-0.1 3,-0.5 -0.409 24.7 -83.2 115.8 166.9 -2.5 -4.8 -9.5 8 8 A Y H 3> S+ 0 0 80 1,-0.2 4,-1.4 -5,-0.2 5,-0.3 0.804 105.4 89.4 -77.6 -30.7 -0.3 -4.1 -6.5 9 9 A I H 3> S+ 0 0 43 1,-0.3 4,-0.6 2,-0.2 -1,-0.2 0.806 103.9 29.4 -33.8 -40.9 -3.0 -2.0 -4.8 10 10 A G H <> S+ 0 0 38 -3,-0.5 4,-2.2 2,-0.1 5,-0.4 0.770 102.5 81.0 -93.2 -30.4 -4.1 -5.3 -3.3 11 11 A L H X S+ 0 0 54 -4,-0.8 4,-2.7 1,-0.2 -2,-0.2 0.899 96.1 46.1 -39.2 -58.0 -0.8 -7.0 -3.2 12 12 A V H X S+ 0 0 1 -4,-1.4 4,-2.8 2,-0.2 5,-0.3 0.964 106.3 57.3 -51.4 -62.2 0.2 -5.2 -0.0 13 13 A N H X S+ 0 0 82 -4,-0.6 4,-1.3 1,-0.3 -1,-0.2 0.861 117.4 35.5 -35.9 -51.9 -3.1 -5.8 1.7 14 14 A S H X S+ 0 0 46 -4,-2.2 4,-2.1 2,-0.2 -1,-0.3 0.806 114.3 60.1 -75.2 -30.6 -2.5 -9.5 1.3 15 15 A F H X S+ 0 0 40 -4,-2.7 4,-2.3 -5,-0.4 -2,-0.2 0.963 103.4 48.8 -61.4 -54.4 1.2 -9.1 1.8 16 16 A A H <>S+ 0 0 7 -4,-2.8 5,-2.8 1,-0.2 3,-0.3 0.946 110.9 49.8 -50.5 -57.0 0.9 -7.7 5.3 17 17 A Q H ><5S+ 0 0 145 -4,-1.3 3,-2.0 -5,-0.3 -1,-0.2 0.908 109.4 52.6 -49.4 -48.2 -1.5 -10.4 6.4 18 18 A K H 3<5S+ 0 0 142 -4,-2.1 -1,-0.2 1,-0.3 -2,-0.2 0.901 114.9 41.0 -56.1 -43.4 0.9 -13.1 5.1 19 19 A K T 3<5S- 0 0 84 -4,-2.3 -1,-0.3 -3,-0.3 -2,-0.2 0.100 111.7-122.1 -92.4 22.0 3.8 -11.5 7.0 20 20 A K T < 5 + 0 0 175 -3,-2.0 -3,-0.2 -5,-0.1 2,-0.1 0.827 64.7 149.1 39.6 39.8 1.5 -11.0 10.0 21 21 A L < - 0 0 53 -5,-2.8 2,-0.5 -6,-0.2 -1,-0.1 -0.398 50.3-112.7 -95.1 174.8 2.4 -7.3 9.7 22 22 A S - 0 0 79 -2,-0.1 23,-1.7 -3,-0.1 2,-0.5 -0.942 27.1-166.8-115.7 117.4 0.3 -4.2 10.5 23 23 A V E -A 44 0A 38 -2,-0.5 2,-0.3 21,-0.2 21,-0.2 -0.875 8.3-179.6-106.0 132.2 -0.8 -1.9 7.7 24 24 A N E -A 43 0A 95 19,-2.3 19,-2.7 -2,-0.5 2,-0.5 -0.948 17.7-151.4-130.4 150.7 -2.2 1.5 8.4 25 25 A Y E -A 42 0A 55 -2,-0.3 2,-0.3 17,-0.2 17,-0.2 -0.916 12.3-162.3-126.5 105.7 -3.5 4.3 6.2 26 26 A E E -A 41 0A 107 15,-2.6 15,-2.6 -2,-0.5 2,-0.6 -0.688 5.2-153.2 -88.6 136.8 -3.2 7.9 7.4 27 27 A Q E +A 40 0A 98 -2,-0.3 2,-0.4 13,-0.2 13,-0.2 -0.929 16.8 176.2-114.7 112.3 -5.3 10.6 5.8 28 28 A C - 0 0 65 11,-0.8 11,-0.2 -2,-0.6 -2,-0.0 -0.953 19.2-142.1-118.7 132.8 -4.0 14.2 5.8 29 29 A E - 0 0 154 -2,-0.4 2,-0.4 9,-0.1 9,-0.1 -0.700 27.4-106.1 -94.2 143.2 -5.6 17.2 4.2 30 30 A P - 0 0 37 0, 0.0 7,-0.1 0, 0.0 -1,-0.1 -0.513 20.7-138.0 -69.8 122.0 -3.6 19.9 2.4 31 31 A N S S+ 0 0 166 -2,-0.4 -2,-0.0 3,-0.0 0, 0.0 0.911 83.2 89.6 -42.9 -55.6 -3.5 23.1 4.5 32 32 A S S S- 0 0 85 1,-0.1 0, 0.0 -3,-0.0 0, 0.0 -0.233 83.7-132.4 -49.7 120.9 -4.0 25.2 1.4 33 33 A E S S+ 0 0 155 1,-0.1 -1,-0.1 3,-0.1 0, 0.0 0.918 72.1 67.2 -39.0 -70.8 -7.8 25.6 1.0 34 34 A L S S+ 0 0 129 2,-0.1 2,-0.2 0, 0.0 -1,-0.1 -0.823 73.5 39.3-121.0 160.7 -7.8 24.7 -2.7 35 35 A P S S- 0 0 106 0, 0.0 2,-0.7 0, 0.0 0, 0.0 0.598 78.6-133.8 -69.7-179.6 -7.5 22.8 -4.8 36 36 A Q + 0 0 120 -2,-0.2 2,-0.4 -7,-0.0 -2,-0.1 -0.897 36.2 158.9-107.9 111.0 -9.0 19.9 -3.0 37 37 A R - 0 0 104 -2,-0.7 18,-0.3 -7,-0.1 2,-0.2 -0.993 31.8-134.3-135.6 128.6 -7.0 16.6 -3.2 38 38 A F E - B 0 54A 79 16,-0.9 16,-2.5 -2,-0.4 2,-0.4 -0.480 20.2-163.4 -79.3 149.5 -7.2 13.6 -0.9 39 39 A I E - B 0 53A 22 -11,-0.2 -11,-0.8 14,-0.2 2,-0.4 -0.999 9.6-174.7-138.4 136.2 -4.0 12.0 0.4 40 40 A C E -AB 27 52A 0 12,-2.5 12,-2.9 -2,-0.4 2,-0.5 -0.966 7.8-160.9-134.9 118.1 -3.4 8.6 2.0 41 41 A K E -AB 26 51A 51 -15,-2.6 -15,-2.6 -2,-0.4 2,-0.6 -0.862 12.8-143.0-101.5 124.9 -0.1 7.4 3.4 42 42 A C E -AB 25 50A 0 8,-1.9 7,-1.8 -2,-0.5 8,-1.7 -0.765 20.9-176.1 -89.7 117.2 0.5 3.7 3.9 43 43 A K E -AB 24 48A 57 -19,-2.7 -19,-2.3 -2,-0.6 2,-0.8 -0.958 14.3-155.4-118.1 126.6 2.5 2.9 7.0 44 44 A I E S-A 23 0A 8 3,-2.2 -21,-0.2 -2,-0.5 -2,-0.0 -0.846 79.7 -22.1-103.3 102.5 3.6 -0.6 8.0 45 45 A G S S- 0 0 37 -23,-1.7 -1,-0.2 -2,-0.8 3,-0.1 0.957 129.0 -45.4 65.9 52.2 4.2 -0.9 11.7 46 46 A Q S S+ 0 0 189 -3,-0.3 2,-0.4 1,-0.2 -1,-0.2 0.767 116.8 122.4 62.5 25.2 4.7 2.8 12.4 47 47 A T - 0 0 68 0, 0.0 -3,-2.2 0, 0.0 2,-0.6 -0.977 66.1-125.2-124.4 129.7 7.0 2.8 9.3 48 48 A M E +B 43 0A 106 -2,-0.4 -5,-0.2 -5,-0.2 3,-0.1 -0.596 45.4 149.1 -74.3 115.9 6.6 5.0 6.3 49 49 A Y E + 0 0 31 -7,-1.8 2,-0.3 -2,-0.6 -1,-0.2 0.776 60.9 2.5-110.5 -61.9 6.5 2.8 3.2 50 50 A G E -B 42 0A 1 -8,-1.7 -8,-1.9 20,-0.0 -1,-0.4 -0.900 52.5-157.2-131.3 160.6 4.3 4.4 0.5 51 51 A T E -B 41 0A 43 -2,-0.3 2,-0.3 -10,-0.3 -10,-0.2 -0.925 9.6-166.2-142.3 114.0 2.3 7.6 0.0 52 52 A G E -B 40 0A 2 -12,-2.9 -12,-2.5 -2,-0.4 2,-0.4 -0.762 4.8-176.2-102.0 146.6 -0.6 8.0 -2.4 53 53 A S E +B 39 0A 52 -2,-0.3 2,-0.3 -14,-0.2 -14,-0.2 -0.969 18.2 134.8-144.6 124.8 -2.2 11.3 -3.5 54 54 A G E -B 38 0A 14 -16,-2.5 -16,-0.9 -2,-0.4 6,-0.1 -0.869 65.5 -85.3-152.4-175.3 -5.2 11.9 -5.7 55 55 A V S S+ 0 0 110 -18,-0.3 2,-0.3 -2,-0.3 -16,-0.1 0.732 113.9 36.2 -71.8 -22.3 -8.4 13.8 -6.2 56 56 A T S > S- 0 0 79 -18,-0.2 4,-2.0 1,-0.2 -1,-0.1 -0.980 83.4-120.3-134.3 145.8 -10.2 11.2 -4.1 57 57 A K H >> S+ 0 0 91 -2,-0.3 4,-2.2 1,-0.2 3,-0.9 0.935 112.1 53.3 -44.0 -62.7 -9.2 9.2 -1.0 58 58 A Q H 3> S+ 0 0 142 1,-0.3 4,-3.0 2,-0.2 5,-0.2 0.908 107.7 49.6 -38.5 -65.1 -9.7 5.9 -2.7 59 59 A E H 3> S+ 0 0 102 2,-0.2 4,-1.7 1,-0.2 -1,-0.3 0.850 117.4 44.8 -45.3 -39.8 -7.5 6.8 -5.6 60 60 A A H X S+ 0 0 79 -4,-3.0 3,-1.4 -5,-0.4 4,-1.0 0.980 108.4 42.2 -52.9 -68.6 -4.9 2.7 -3.5 63 63 A L H 3X S+ 0 0 69 -4,-1.7 4,-1.5 1,-0.3 3,-0.3 0.896 102.0 72.1 -45.9 -48.3 -1.7 4.0 -5.1 64 64 A A H 3X S+ 0 0 0 -4,-2.5 4,-2.1 1,-0.3 3,-0.4 0.851 97.0 50.6 -34.6 -51.4 -0.1 4.2 -1.6 65 65 A A H X S+ 0 0 50 -4,-2.9 4,-1.9 2,-0.2 3,-1.8 0.993 107.7 42.0 -58.8 -68.5 4.9 -3.1 -2.3 70 70 A Q H 3X S+ 0 0 80 -4,-1.5 4,-1.8 1,-0.3 5,-0.2 0.846 109.6 62.2 -48.0 -37.8 8.1 -2.2 -4.2 71 71 A K H 3X S+ 0 0 78 -4,-2.1 4,-2.8 1,-0.2 -1,-0.3 0.855 105.6 45.9 -58.1 -36.1 9.4 -0.9 -0.9 72 72 A L H << S+ 0 0 6 -3,-1.8 -2,-0.2 -4,-1.3 -1,-0.2 0.922 107.1 55.5 -73.4 -46.1 9.1 -4.4 0.5 73 73 A L H < S+ 0 0 108 -4,-1.9 -2,-0.2 1,-0.2 -1,-0.2 0.819 119.1 35.7 -56.1 -31.6 10.7 -6.2 -2.4 74 74 A K H < S+ 0 0 162 -4,-1.8 -2,-0.2 -5,-0.2 -1,-0.2 0.887 136.9 17.3 -88.2 -46.8 13.7 -3.9 -1.9 75 75 A S S < S- 0 0 84 -4,-2.8 -1,-0.2 -5,-0.2 -2,-0.2 -0.751 80.4-171.0-132.2 86.2 13.7 -3.7 1.8 76 76 A P - 0 0 73 0, 0.0 2,-0.8 0, 0.0 -3,-0.1 -0.126 43.4 -73.2 -69.8 169.4 11.6 -6.5 3.5 77 77 A P - 0 0 28 0, 0.0 2,-0.3 0, 0.0 -5,-0.0 -0.533 52.0-120.0 -69.7 103.8 10.7 -6.7 7.2 78 78 A K - 0 0 214 -2,-0.8 2,-0.3 -3,-0.1 -3,-0.0 -0.219 44.8-179.1 -47.3 101.5 13.9 -7.7 9.0 79 79 A T - 0 0 108 -2,-0.3 3,-0.1 1,-0.1 -1,-0.0 -0.804 33.8-137.2-110.3 151.5 12.8 -11.0 10.6 80 80 A A - 0 0 112 -2,-0.3 2,-0.2 1,-0.2 -1,-0.1 0.961 64.2 -78.5 -68.7 -53.6 14.7 -13.4 12.8 81 81 A G - 0 0 59 2,-0.0 2,-0.4 0, 0.0 -1,-0.2 -0.572 31.5-116.4 153.6 142.3 13.5 -16.6 11.1 82 82 A T + 0 0 134 -2,-0.2 2,-0.3 -3,-0.1 -3,-0.0 -0.825 39.3 152.3-102.7 137.5 10.6 -19.0 11.0 83 83 A S + 0 0 129 -2,-0.4 3,-0.1 5,-0.0 5,-0.1 -0.940 11.9 107.3-163.4 138.4 10.8 -22.6 12.1 84 84 A G > - 0 0 33 -2,-0.3 3,-1.1 3,-0.2 -2,-0.0 -0.655 61.7-113.0 156.7 146.2 8.4 -25.2 13.5 85 85 A P T 3 S+ 0 0 138 0, 0.0 3,-0.2 0, 0.0 -1,-0.1 0.668 92.1 98.0 -69.8 -16.8 6.6 -28.5 12.6 86 86 A S T 3 S+ 0 0 113 1,-0.2 2,-0.3 -3,-0.1 -2,-0.0 0.802 103.2 2.1 -40.8 -34.2 3.3 -26.6 12.9 87 87 A S < 0 0 102 -3,-1.1 -1,-0.2 1,-0.0 -3,-0.2 -0.940 360.0 360.0-160.0 134.2 3.5 -26.4 9.1 88 88 A G 0 0 135 -2,-0.3 -2,-0.0 -3,-0.2 -1,-0.0 -0.288 360.0 360.0-133.2 360.0 6.0 -27.7 6.5