==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=20-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RNA BINDING PROTEIN 14-MAY-05 1X4H . COMPND 2 MOLECULE: RNA-BINDING PROTEIN 28; . SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; . AUTHOR F.HE,Y.MUTO,M.INOUE,T.KIGAWA,M.SHIROUZU,T.TERADA,S.YOKOYAMA, . 111 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 8684.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 62 55.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 20 18.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 0.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 0.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 15 13.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 8 7.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 16 14.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 0.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 1 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 128 0, 0.0 2,-0.3 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 146.4 -36.9 31.0 -6.5 2 2 A S - 0 0 132 2,-0.0 2,-0.3 0, 0.0 0, 0.0 -0.930 360.0-156.7-153.9 174.8 -33.6 29.3 -5.8 3 3 A S + 0 0 131 -2,-0.3 2,-0.2 3,-0.0 3,-0.1 -0.888 45.8 76.7-164.1 128.9 -30.0 29.0 -7.0 4 4 A G + 0 0 44 -2,-0.3 -2,-0.0 1,-0.1 0, 0.0 -0.617 11.3 154.8 175.1-110.0 -27.3 26.4 -6.7 5 5 A S + 0 0 132 -2,-0.2 2,-0.1 1,-0.2 -1,-0.1 0.880 43.8 159.6 53.1 41.0 -26.8 23.1 -8.5 6 6 A S + 0 0 119 -3,-0.1 2,-0.3 2,-0.0 -1,-0.2 -0.445 14.8 169.9 -90.5 166.3 -23.0 23.3 -7.8 7 7 A G - 0 0 75 -2,-0.1 3,-0.0 2,-0.0 0, 0.0 -0.873 28.7-120.5-176.2 141.3 -20.5 20.5 -7.8 8 8 A L - 0 0 151 -2,-0.3 2,-0.3 1,-0.1 -2,-0.0 -0.577 40.8 -97.7 -88.6 150.9 -16.7 19.9 -7.6 9 9 A P - 0 0 111 0, 0.0 2,-0.7 0, 0.0 -1,-0.1 -0.499 33.9-156.5 -69.7 125.8 -14.8 18.1 -10.4 10 10 A S + 0 0 122 -2,-0.3 2,-0.2 -3,-0.0 0, 0.0 -0.900 24.6 158.7-109.9 108.6 -14.2 14.4 -9.6 11 11 A D - 0 0 131 -2,-0.7 2,-0.5 0, 0.0 0, 0.0 -0.744 39.9-105.3-122.3 170.8 -11.2 12.8 -11.3 12 12 A V + 0 0 123 -2,-0.2 2,-0.3 2,-0.0 -2,-0.0 -0.845 41.0 168.2-102.3 131.9 -9.0 9.8 -10.8 13 13 A T - 0 0 97 -2,-0.5 2,-1.4 2,-0.0 0, 0.0 -0.894 46.1 -88.8-136.7 166.1 -5.4 10.2 -9.5 14 14 A E + 0 0 175 -2,-0.3 52,-0.0 1,-0.1 51,-0.0 -0.617 67.0 134.4 -79.3 93.3 -2.6 8.1 -8.1 15 15 A G + 0 0 44 -2,-1.4 2,-0.5 84,-0.0 -1,-0.1 -0.205 28.3 115.2-135.3 45.3 -3.3 8.0 -4.4 16 16 A K + 0 0 26 48,-0.2 2,-0.3 54,-0.0 48,-0.2 -0.964 31.9 153.6-121.9 119.1 -2.9 4.4 -3.4 17 17 A T - 0 0 26 -2,-0.5 2,-0.3 46,-0.2 46,-0.2 -0.932 20.9-166.8-139.5 162.3 -0.2 3.3 -1.0 18 18 A V E -A 62 0A 0 44,-1.9 44,-3.0 -2,-0.3 2,-0.5 -0.876 2.7-166.5-156.1 118.5 0.5 0.6 1.6 19 19 A F E -AB 61 96A 38 77,-3.0 77,-1.9 -2,-0.3 2,-0.4 -0.921 10.7-151.9-110.9 126.5 3.2 0.3 4.2 20 20 A I E -AB 60 95A 2 40,-2.7 40,-1.7 -2,-0.5 2,-0.3 -0.821 13.3-169.2 -99.6 132.5 3.9 -2.9 6.0 21 21 A R E +AB 59 94A 160 73,-1.4 73,-1.9 -2,-0.4 38,-0.2 -0.825 62.5 30.2-118.7 158.0 5.3 -2.9 9.6 22 22 A N S S+ 0 0 89 36,-1.1 -1,-0.2 -2,-0.3 37,-0.2 0.885 79.4 179.9 64.6 39.6 6.7 -5.7 11.8 23 23 A L - 0 0 8 35,-1.1 2,-0.3 -3,-0.2 -1,-0.2 -0.388 23.1-123.8 -72.7 150.2 8.1 -7.5 8.7 24 24 A S > - 0 0 9 64,-0.2 3,-2.1 67,-0.2 -1,-0.1 -0.734 17.1-119.8 -97.9 144.7 10.0 -10.8 9.2 25 25 A F T 3 S+ 0 0 123 -2,-0.3 31,-0.1 1,-0.3 -1,-0.1 0.801 116.7 60.5 -48.9 -30.6 13.5 -11.4 7.9 26 26 A D T 3 S+ 0 0 99 62,-0.1 -1,-0.3 63,-0.1 63,-0.1 0.826 84.0 100.3 -67.7 -32.1 11.9 -14.2 5.9 27 27 A S < - 0 0 9 -3,-2.1 2,-0.3 61,-0.2 29,-0.0 -0.229 55.8-172.4 -56.4 141.9 9.7 -11.7 4.1 28 28 A E > - 0 0 125 1,-0.1 4,-3.1 28,-0.0 5,-0.3 -0.983 40.1-110.0-140.4 150.5 10.9 -10.8 0.6 29 29 A E H > S+ 0 0 81 -2,-0.3 4,-1.7 1,-0.2 5,-0.2 0.835 121.2 51.1 -44.5 -37.8 9.8 -8.3 -2.0 30 30 A E H > S+ 0 0 138 2,-0.2 4,-2.1 3,-0.1 -1,-0.2 0.981 117.1 35.1 -65.8 -59.1 8.6 -11.2 -4.0 31 31 A A H > S+ 0 0 38 2,-0.2 4,-1.5 1,-0.2 5,-0.2 0.969 114.2 57.5 -60.0 -57.0 6.5 -12.9 -1.3 32 32 A L H >X S+ 0 0 5 -4,-3.1 4,-1.3 1,-0.2 3,-1.2 0.900 110.3 44.3 -39.1 -58.5 5.3 -9.6 0.3 33 33 A G H >X S+ 0 0 3 -4,-1.7 4,-1.9 -5,-0.3 3,-0.9 0.927 109.0 55.3 -55.4 -49.2 3.9 -8.5 -3.1 34 34 A E H 3X S+ 0 0 111 -4,-2.1 4,-0.5 1,-0.3 -1,-0.3 0.696 107.3 54.2 -58.5 -17.7 2.3 -11.8 -3.7 35 35 A V H << S+ 0 0 28 -4,-1.5 -1,-0.3 -3,-1.2 4,-0.3 0.790 114.3 37.0 -86.0 -31.5 0.6 -11.4 -0.3 36 36 A L H > S- 0 0 76 -25,-0.3 4,-1.4 1,-0.1 3,-0.8 -0.999 74.0-131.3-140.0 139.8 -7.0 0.8 -7.3 67 67 A Q H 3> S+ 0 0 108 -2,-0.4 4,-2.0 1,-0.3 5,-0.2 0.914 110.6 56.8 -51.8 -48.1 -7.8 2.8 -4.2 68 68 A E H 3> S+ 0 0 137 1,-0.2 4,-2.2 2,-0.2 -1,-0.3 0.850 102.0 59.4 -53.0 -36.5 -10.3 0.1 -3.1 69 69 A A H X> S+ 0 0 3 -3,-0.8 4,-1.5 2,-0.2 3,-0.6 0.983 104.1 45.6 -56.7 -64.4 -7.5 -2.4 -3.3 70 70 A A H 3X S+ 0 0 0 -4,-1.4 4,-1.5 1,-0.3 3,-0.5 0.880 113.9 51.4 -46.8 -44.6 -5.2 -0.8 -0.7 71 71 A Q H 3X S+ 0 0 89 -4,-2.0 4,-1.7 1,-0.2 -1,-0.3 0.875 104.6 56.4 -62.3 -38.4 -8.3 -0.4 1.6 72 72 A K H << S+ 0 0 109 -4,-2.2 4,-0.5 -3,-0.6 -1,-0.2 0.801 105.0 53.7 -63.9 -28.9 -9.1 -4.0 1.2 73 73 A C H X S+ 0 0 0 -4,-1.5 4,-2.3 -3,-0.5 -1,-0.2 0.880 106.8 51.4 -73.2 -39.7 -5.6 -4.9 2.4 74 74 A L H >X S+ 0 0 34 -4,-1.5 4,-2.0 2,-0.2 3,-0.9 0.995 105.2 51.0 -60.2 -68.2 -6.0 -2.8 5.6 75 75 A A H 3< S+ 0 0 64 -4,-1.7 -1,-0.2 1,-0.3 10,-0.2 0.737 117.5 45.8 -42.6 -24.0 -9.3 -4.2 6.8 76 76 A A H 34 S+ 0 0 18 -4,-0.5 9,-1.1 -5,-0.2 -1,-0.3 0.816 109.0 51.4 -89.6 -36.3 -7.5 -7.5 6.3 77 77 A A H << S+ 0 0 5 -4,-2.3 2,-1.1 -3,-0.9 9,-0.5 0.610 91.7 90.5 -75.8 -12.0 -4.3 -6.5 8.0 78 78 A S >< - 0 0 45 -4,-2.0 3,-1.1 7,-0.2 6,-0.1 -0.731 60.7-166.5 -90.3 96.3 -6.3 -5.4 11.0 79 79 A L T 3 >S+ 0 0 102 -2,-1.1 5,-0.6 5,-0.3 4,-0.2 0.731 88.9 62.7 -52.4 -21.6 -6.5 -8.4 13.3 80 80 A E T 3 5S+ 0 0 152 3,-0.1 3,-0.3 2,-0.1 -1,-0.3 0.915 86.6 86.4 -71.3 -44.6 -9.2 -6.3 15.1 81 81 A A T X 5S- 0 0 24 -3,-1.1 2,-0.8 1,-0.2 3,-0.8 0.126 109.1 -59.2 -48.2 171.6 -11.5 -6.2 12.1 82 82 A E T 3 5S- 0 0 199 1,-0.3 -1,-0.2 2,-0.0 -2,-0.1 -0.422 116.1 -28.1 -61.4 101.3 -14.0 -9.0 11.5 83 83 A G T 3 5S+ 0 0 87 -2,-0.8 -1,-0.3 -3,-0.3 -3,-0.1 0.978 108.9 121.6 52.1 72.0 -11.7 -12.0 11.2 84 84 A G < < + 0 0 31 -3,-0.8 -5,-0.3 -5,-0.6 -7,-0.2 -0.197 8.1 122.0-131.0-137.3 -8.6 -10.3 9.9 85 85 A G - 0 0 23 -9,-1.1 2,-0.3 -11,-0.3 -8,-0.2 0.754 46.6-133.8 71.6 116.9 -4.9 -9.8 10.8 86 86 A L E -E 93 0C 24 7,-0.6 7,-2.2 -9,-0.5 2,-0.3 -0.699 18.5-168.7-102.3 155.2 -2.2 -11.0 8.5 87 87 A K E -E 92 0C 148 5,-0.3 2,-0.4 -2,-0.3 5,-0.3 -0.999 8.7-171.5-145.4 140.6 0.9 -12.9 9.3 88 88 A L S S- 0 0 27 3,-3.0 -61,-0.2 -2,-0.3 -64,-0.2 -0.915 77.6 -14.2-137.4 109.1 4.1 -13.8 7.4 89 89 A D S S- 0 0 92 -2,-0.4 -63,-0.1 1,-0.2 -1,-0.1 0.895 130.9 -48.5 69.4 41.2 6.7 -16.3 8.8 90 90 A G S S+ 0 0 75 1,-0.2 2,-0.4 -66,-0.1 -1,-0.2 0.817 119.3 110.6 69.0 30.6 5.1 -16.3 12.2 91 91 A R - 0 0 127 -67,-0.1 -3,-3.0 2,-0.0 -67,-0.2 -0.966 68.2-122.9-142.3 122.3 5.1 -12.5 12.3 92 92 A Q E -E 87 0C 63 -2,-0.4 2,-0.5 -5,-0.3 -5,-0.3 -0.225 24.9-139.2 -60.0 149.2 2.0 -10.2 12.2 93 93 A L E -E 86 0C 8 -7,-2.2 2,-0.7 -16,-0.1 -7,-0.6 -0.955 6.9-156.0-118.3 129.6 1.9 -7.6 9.4 94 94 A K E -B 21 0A 117 -73,-1.9 -73,-1.4 -2,-0.5 2,-0.6 -0.874 12.6-172.2-107.3 104.7 0.7 -4.0 9.8 95 95 A V E +B 20 0A 14 -2,-0.7 2,-0.3 -75,-0.2 -75,-0.2 -0.852 11.8 166.0-100.3 123.1 -0.5 -2.5 6.5 96 96 A D E -B 19 0A 105 -77,-1.9 -77,-3.0 -2,-0.6 2,-0.9 -0.991 47.0 -97.5-137.5 144.4 -1.4 1.2 6.6 97 97 A L - 0 0 60 -2,-0.3 -79,-0.2 -79,-0.2 2,-0.0 -0.430 51.5-169.3 -62.1 100.0 -2.0 3.7 3.8 98 98 A A - 0 0 18 -2,-0.9 2,-0.3 -36,-0.2 -81,-0.1 -0.181 6.6-155.3 -83.3-179.9 1.4 5.4 3.5 99 99 A V - 0 0 112 2,-0.1 2,-1.2 -83,-0.0 -84,-0.0 -0.955 20.4-126.0-161.1 139.8 2.3 8.6 1.6 100 100 A T + 0 0 124 -2,-0.3 2,-0.3 2,-0.0 -2,-0.0 -0.698 39.9 176.6 -91.0 89.1 5.4 10.1 0.1 101 101 A R - 0 0 193 -2,-1.2 2,-0.5 2,-0.0 -2,-0.1 -0.652 21.3-148.3 -94.1 150.2 5.6 13.5 1.7 102 102 A D - 0 0 146 -2,-0.3 2,-0.7 2,-0.1 -2,-0.0 -0.894 16.9-133.2-122.7 101.5 8.4 16.0 1.0 103 103 A E + 0 0 166 -2,-0.5 2,-0.2 2,-0.0 -2,-0.0 -0.320 62.8 115.2 -54.3 99.3 9.3 18.3 4.0 104 104 A A + 0 0 90 -2,-0.7 2,-0.3 2,-0.0 -2,-0.1 -0.789 25.6 138.4-173.0 125.9 9.4 21.7 2.2 105 105 A A - 0 0 106 -2,-0.2 2,-0.4 2,-0.0 -2,-0.0 -0.978 43.8-107.4-166.5 157.7 7.4 24.9 2.3 106 106 A S - 0 0 120 -2,-0.3 -2,-0.0 1,-0.0 0, 0.0 -0.760 30.6-137.2 -96.0 137.7 7.7 28.7 2.2 107 107 A G - 0 0 65 -2,-0.4 2,-0.2 1,-0.1 -2,-0.0 -0.713 22.6-107.5 -96.5 144.5 7.1 30.7 5.4 108 108 A P - 0 0 127 0, 0.0 -1,-0.1 0, 0.0 0, 0.0 -0.459 35.9-121.3 -69.8 133.9 5.2 34.0 5.5 109 109 A S - 0 0 126 -2,-0.2 2,-0.3 1,-0.1 0, 0.0 -0.060 24.9-135.7 -66.7 173.6 7.2 37.1 6.0 110 110 A S 0 0 118 0, 0.0 -1,-0.1 0, 0.0 0, 0.0 -0.804 360.0 360.0-129.0 170.4 6.7 39.5 8.9 111 111 A G 0 0 127 -2,-0.3 -2,-0.0 0, 0.0 0, 0.0 -0.001 360.0 360.0 -49.1 360.0 6.5 43.3 9.5