==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=20-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RNA BINDING PROTEIN 14-MAY-05 1X4T . COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN LOC57905; . SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; . AUTHOR F.HE,Y.MUTO,M.INOUE,T.KIGAWA,M.SHIROUZU,T.TERADA,S.YOKOYAMA, . 92 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7584.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 65 70.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 6 6.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 8 8.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 47 51.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 138 0, 0.0 2,-0.3 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 177.2 30.7 -17.8 22.4 2 2 A S - 0 0 130 2,-0.1 2,-0.4 0, 0.0 0, 0.0 -0.950 360.0-111.3-143.7 162.3 29.6 -15.7 19.5 3 3 A S + 0 0 123 -2,-0.3 2,-0.1 2,-0.0 0, 0.0 -0.795 47.0 137.3 -99.3 137.3 27.5 -12.6 18.7 4 4 A G + 0 0 71 -2,-0.4 2,-0.3 2,-0.0 -2,-0.1 -0.388 13.1 142.4 179.8 94.7 24.2 -12.8 16.9 5 5 A S + 0 0 122 -2,-0.1 2,-0.3 0, 0.0 3,-0.1 -1.000 13.0 168.5-143.2 141.6 21.0 -10.9 17.7 6 6 A S + 0 0 124 -2,-0.3 -2,-0.0 1,-0.1 0, 0.0 -0.926 42.3 69.5-145.3 168.2 18.3 -9.3 15.6 7 7 A G + 0 0 82 -2,-0.3 -1,-0.1 2,-0.2 3,-0.1 0.953 51.0 128.1 84.9 60.2 14.8 -7.8 16.0 8 8 A K S S- 0 0 199 1,-0.4 2,-0.3 -3,-0.1 -2,-0.0 0.503 76.3 -3.8-118.7 -14.4 15.3 -4.6 18.0 9 9 A V S S- 0 0 128 0, 0.0 -1,-0.4 0, 0.0 -2,-0.2 -0.933 76.8 -91.7-175.0 152.2 13.5 -2.2 15.7 10 10 A K - 0 0 189 -2,-0.3 2,-0.4 -3,-0.1 -2,-0.0 -0.226 40.2-122.5 -67.9 160.6 11.7 -1.9 12.3 11 11 A E - 0 0 141 0, 0.0 2,-0.6 0, 0.0 -1,-0.1 -0.873 13.8-129.3-110.4 140.7 13.5 -1.0 9.2 12 12 A R - 0 0 220 -2,-0.4 0, 0.0 1,-0.0 0, 0.0 -0.778 27.3-122.3 -91.3 120.3 12.7 2.0 6.9 13 13 A R - 0 0 52 -2,-0.6 -1,-0.0 1,-0.1 0, 0.0 -0.272 28.4-122.8 -60.1 141.9 12.4 1.1 3.2 14 14 A P - 0 0 46 0, 0.0 3,-0.1 0, 0.0 -1,-0.1 0.191 5.2-132.7 -69.8-165.1 14.7 3.0 0.9 15 15 A F S S+ 0 0 157 1,-0.2 2,-0.7 52,-0.0 3,-0.0 0.583 86.6 63.6-125.0 -29.9 13.8 5.1 -2.1 16 16 A L >> - 0 0 107 1,-0.1 3,-1.6 54,-0.0 4,-1.1 -0.873 65.7-154.2-106.1 105.8 16.1 3.9 -4.9 17 17 A A T 34 S+ 0 0 14 -2,-0.7 -1,-0.1 1,-0.3 9,-0.1 0.736 98.9 59.4 -46.6 -23.0 15.5 0.3 -5.8 18 18 A S T 34 S+ 0 0 80 1,-0.2 -1,-0.3 3,-0.1 -2,-0.0 0.885 93.6 61.6 -75.1 -40.6 19.1 0.4 -6.9 19 19 A E T <4 S+ 0 0 141 -3,-1.6 2,-1.5 1,-0.2 -2,-0.2 0.890 87.9 79.4 -52.4 -43.0 20.4 1.4 -3.4 20 20 A C < + 0 0 18 -4,-1.1 -1,-0.2 1,-0.2 6,-0.1 -0.534 57.7 176.5 -72.0 91.9 19.1 -1.9 -2.1 21 21 A T + 0 0 115 -2,-1.5 2,-0.5 4,-0.1 -1,-0.2 0.033 49.0 103.3 -85.8 27.9 21.8 -4.3 -3.2 22 22 A E > - 0 0 101 1,-0.2 4,-1.6 2,-0.0 3,-0.3 -0.953 53.8-165.5-117.4 120.4 20.0 -7.2 -1.4 23 23 A L H > S+ 0 0 58 -2,-0.5 4,-0.8 1,-0.2 3,-0.3 0.949 95.8 45.9 -64.8 -50.6 18.0 -9.7 -3.4 24 24 A P H 4 S+ 0 0 71 0, 0.0 4,-0.3 0, 0.0 -1,-0.2 0.564 111.2 57.3 -69.7 -7.9 16.2 -11.1 -0.3 25 25 A K H >> S+ 0 0 80 -3,-0.3 4,-1.3 2,-0.2 3,-0.6 0.822 102.0 50.3 -90.7 -37.6 15.6 -7.5 0.8 26 26 A A H 3X S+ 0 0 0 -4,-1.6 4,-0.6 -3,-0.3 49,-0.2 0.640 102.7 64.4 -75.0 -14.3 13.8 -6.4 -2.3 27 27 A E H 3X S+ 0 0 67 -4,-0.8 4,-0.6 2,-0.2 -1,-0.2 0.742 107.3 40.2 -79.6 -24.6 11.5 -9.4 -2.0 28 28 A K H <> S+ 0 0 79 -3,-0.6 4,-1.5 -4,-0.3 -2,-0.2 0.717 110.1 57.8 -94.0 -26.1 10.1 -8.1 1.3 29 29 A W H X S+ 0 0 16 -4,-1.3 4,-0.7 1,-0.2 -2,-0.2 0.680 103.9 54.9 -76.9 -18.3 9.9 -4.5 0.2 30 30 A R H X S+ 0 0 36 -4,-0.6 4,-1.2 2,-0.2 -1,-0.2 0.851 108.6 45.4 -82.0 -37.9 7.6 -5.5 -2.6 31 31 A R H X S+ 0 0 174 -4,-0.6 4,-1.7 1,-0.2 -2,-0.2 0.851 107.1 58.9 -73.5 -35.7 5.1 -7.3 -0.4 32 32 A Q H X S+ 0 0 102 -4,-1.5 4,-0.9 1,-0.2 -1,-0.2 0.832 105.7 50.2 -62.3 -32.9 5.0 -4.5 2.1 33 33 A I H X S+ 0 0 0 -4,-0.7 4,-2.2 2,-0.2 -1,-0.2 0.859 104.1 58.2 -73.7 -36.8 3.9 -2.1 -0.7 34 34 A I H X S+ 0 0 61 -4,-1.2 4,-2.1 1,-0.2 5,-0.2 0.924 102.9 52.7 -59.1 -46.9 1.1 -4.4 -1.8 35 35 A G H X S+ 0 0 35 -4,-1.7 4,-2.1 1,-0.2 -1,-0.2 0.850 109.2 50.7 -58.4 -35.6 -0.5 -4.4 1.6 36 36 A E H X S+ 0 0 91 -4,-0.9 4,-1.6 2,-0.2 -1,-0.2 0.942 107.0 52.1 -68.1 -49.2 -0.5 -0.6 1.6 37 37 A I H X S+ 0 0 20 -4,-2.2 4,-2.6 1,-0.2 3,-0.3 0.928 112.4 46.1 -52.6 -50.3 -2.1 -0.2 -1.9 38 38 A S H X S+ 0 0 74 -4,-2.1 4,-2.2 1,-0.2 5,-0.2 0.966 106.7 56.2 -58.1 -56.9 -5.0 -2.5 -0.9 39 39 A K H X S+ 0 0 159 -4,-2.1 4,-0.9 1,-0.3 -1,-0.2 0.808 114.9 42.2 -45.8 -32.7 -5.6 -0.8 2.5 40 40 A K H X S+ 0 0 48 -4,-1.6 4,-1.6 -3,-0.3 -1,-0.3 0.860 104.8 62.4 -83.4 -39.6 -6.0 2.3 0.4 41 41 A V H X S+ 0 0 57 -4,-2.6 4,-2.4 1,-0.2 -2,-0.2 0.860 101.8 54.9 -53.8 -37.8 -8.1 0.7 -2.4 42 42 A A H X S+ 0 0 51 -4,-2.2 4,-2.1 2,-0.2 -1,-0.2 0.970 103.0 52.1 -61.1 -56.6 -10.8 -0.1 0.2 43 43 A Q H X S+ 0 0 70 -4,-0.9 4,-1.0 1,-0.2 5,-0.5 0.826 113.7 47.4 -49.8 -34.1 -11.2 3.5 1.4 44 44 A I H < S+ 0 0 37 -4,-1.6 -1,-0.2 2,-0.2 -2,-0.2 0.899 107.0 54.0 -75.4 -42.7 -11.6 4.5 -2.2 45 45 A Q H < S+ 0 0 149 -4,-2.4 -2,-0.2 1,-0.2 -1,-0.2 0.806 102.6 61.1 -61.4 -29.7 -14.1 1.7 -3.0 46 46 A N H < S- 0 0 119 -4,-2.1 -1,-0.2 -5,-0.2 -2,-0.2 0.937 79.8-167.2 -63.1 -48.5 -16.2 2.9 -0.1 47 47 A A < + 0 0 74 -4,-1.0 -3,-0.1 -3,-0.2 4,-0.1 0.864 57.9 102.4 61.1 37.0 -16.8 6.4 -1.6 48 48 A G + 0 0 67 -5,-0.5 -1,-0.1 2,-0.1 -4,-0.1 0.055 55.1 76.2-137.1 26.1 -18.1 7.7 1.7 49 49 A L S S- 0 0 60 -6,-0.2 4,-0.1 -5,-0.1 3,-0.1 0.626 102.9 -95.6-108.9 -23.0 -15.1 9.6 3.1 50 50 A G >> - 0 0 21 1,-0.1 4,-2.0 2,-0.1 3,-1.8 0.099 30.5 -88.8 112.7 134.8 -15.4 12.7 0.9 51 51 A E H 3> S+ 0 0 145 1,-0.3 4,-3.2 2,-0.2 5,-0.3 0.876 126.0 58.1 -34.8 -60.4 -13.8 13.9 -2.3 52 52 A F H 3> S+ 0 0 156 1,-0.2 4,-1.7 2,-0.2 -1,-0.3 0.855 112.4 42.2 -40.2 -44.7 -11.0 15.5 -0.3 53 53 A R H <> S+ 0 0 130 -3,-1.8 4,-2.5 2,-0.2 -2,-0.2 0.979 111.5 51.4 -69.0 -58.6 -10.3 12.1 1.1 54 54 A I H X S+ 0 0 35 -4,-2.0 4,-2.6 1,-0.2 5,-0.3 0.853 110.9 52.3 -46.8 -39.5 -10.7 10.0 -2.0 55 55 A R H X S+ 0 0 176 -4,-3.2 4,-2.3 -5,-0.3 -1,-0.2 0.946 107.9 48.9 -64.0 -50.2 -8.2 12.4 -3.7 56 56 A D H X S+ 0 0 99 -4,-1.7 4,-1.3 -5,-0.3 -2,-0.2 0.887 116.3 45.0 -57.2 -41.0 -5.6 12.0 -1.0 57 57 A L H >X S+ 0 0 8 -4,-2.5 4,-2.6 2,-0.2 3,-1.3 0.995 111.7 47.5 -66.8 -65.3 -5.9 8.2 -1.2 58 58 A N H 3X S+ 0 0 62 -4,-2.6 4,-1.5 1,-0.3 5,-0.2 0.844 108.0 60.4 -44.5 -39.2 -5.9 7.9 -5.0 59 59 A D H 3X S+ 0 0 100 -4,-2.3 4,-1.2 -5,-0.3 -1,-0.3 0.909 110.2 39.4 -57.2 -44.6 -2.9 10.2 -5.0 60 60 A E H X S+ 0 0 92 -4,-2.1 4,-2.0 -5,-0.3 3,-0.8 0.955 105.1 56.8 -64.4 -51.9 2.2 1.3 -7.4 66 66 A R H 3X S+ 0 0 172 -4,-3.1 4,-0.7 1,-0.3 -1,-0.2 0.871 104.7 54.4 -47.0 -42.7 5.1 3.1 -9.1 67 67 A E H >X S+ 0 0 24 -4,-1.0 4,-2.1 -5,-0.3 3,-0.8 0.888 105.7 52.9 -60.6 -40.4 7.4 1.8 -6.3 68 68 A K H S+ 0 0 32 -4,-1.2 4,-1.7 -3,-0.8 5,-0.7 0.945 99.7 60.1 -61.1 -50.3 6.3 -1.8 -7.0 69 69 A G H 3<5S+ 0 0 35 -4,-2.0 -1,-0.2 1,-0.2 -2,-0.2 0.737 111.9 42.8 -50.8 -22.8 7.1 -1.6 -10.7 70 70 A H H >S+ 0 0 0 -4,-2.4 5,-2.4 2,-0.2 4,-0.5 0.826 106.0 45.0 -71.9 -32.4 14.1 -8.4 -7.8 76 76 A K H X45S+ 0 0 100 -3,-1.1 3,-0.6 -4,-0.4 -2,-0.2 0.866 109.6 53.8 -78.5 -38.7 14.4 -10.1 -11.2 77 77 A E H 3<5S+ 0 0 138 -4,-2.0 -1,-0.2 1,-0.2 -2,-0.2 0.713 106.3 55.5 -68.2 -20.1 17.2 -7.9 -12.5 78 78 A L H 3<5S- 0 0 58 -4,-0.8 -1,-0.2 -5,-0.2 -2,-0.2 0.709 131.5 -90.5 -84.3 -22.4 19.1 -8.9 -9.3 79 79 A G T <<5S+ 0 0 64 -3,-0.6 -3,-0.2 -4,-0.5 -2,-0.1 0.531 92.0 103.9 121.8 15.9 18.8 -12.6 -10.1 80 80 A G S S+ 0 0 83 -11,-1.5 4,-0.6 -2,-0.6 -10,-0.2 0.651 80.0 37.6-112.6 -28.7 6.9 -10.1 -10.3 84 84 A G T 4 S+ 0 0 12 -12,-0.8 -11,-0.2 2,-0.2 -2,-0.1 0.823 107.1 62.6 -92.7 -37.1 6.8 -7.1 -12.5 85 85 A K T 4 S+ 0 0 107 -13,-0.3 -1,-0.1 1,-0.2 -2,-0.1 0.926 108.2 43.7 -53.5 -49.4 7.8 -8.7 -15.8 86 86 A V T 4 S+ 0 0 99 1,-0.1 2,-1.1 -4,-0.1 -1,-0.2 0.905 98.7 80.1 -63.6 -42.9 4.7 -10.9 -15.8 87 87 A S S < S- 0 0 87 -4,-0.6 -1,-0.1 -18,-0.0 -4,-0.1 -0.539 110.5 -23.3 -70.9 98.6 2.4 -8.0 -14.7 88 88 A G S S- 0 0 49 -2,-1.1 3,-0.1 2,-0.0 0, 0.0 -0.301 100.5 -39.1 92.6-179.5 1.9 -6.2 -18.0 89 89 A P S S- 0 0 122 0, 0.0 2,-0.5 0, 0.0 -2,-0.0 0.065 76.1 -73.1 -69.8-174.6 3.8 -6.1 -21.2 90 90 A S + 0 0 91 2,-0.0 2,-0.4 -4,-0.0 -5,-0.1 -0.737 54.3 173.2 -89.4 127.8 7.6 -6.0 -21.6 91 91 A S 0 0 127 -2,-0.5 0, 0.0 -3,-0.1 0, 0.0 -0.999 360.0 360.0-137.6 136.9 9.3 -2.7 -20.7 92 92 A G 0 0 131 -2,-0.4 -2,-0.0 0, 0.0 -1,-0.0 -0.413 360.0 360.0 117.1 360.0 13.0 -1.8 -20.4