==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=20-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RNA BINDING PROTEIN 16-MAY-05 1X5P . COMPND 2 MOLECULE: NEGATIVE ELONGATION FACTOR E; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR W.DANG,Y.MUTO,M.INOUE,T.KIGAWA,M.SHIROUZU,T.TERADA, . 97 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7524.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 56 57.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 22 22.7 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 11 11.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 6 6.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 16 16.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 2 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 123 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 138.2 -32.5 5.3 -2.6 2 2 A S - 0 0 103 1,-0.1 4,-0.1 4,-0.0 3,-0.0 -0.123 360.0-148.5 -41.9 116.9 -28.8 5.6 -3.2 3 3 A S S S- 0 0 136 2,-0.1 2,-0.2 0, 0.0 -1,-0.1 0.951 70.4 -14.2 -56.1 -53.9 -27.4 2.2 -2.3 4 4 A G S S- 0 0 48 1,-0.2 0, 0.0 0, 0.0 0, 0.0 -0.617 101.5 -36.8-135.3-165.1 -24.1 3.5 -1.1 5 5 A S - 0 0 113 -2,-0.2 2,-1.5 1,-0.1 -1,-0.2 -0.269 63.3-108.4 -60.7 144.5 -21.9 6.6 -1.1 6 6 A S S S- 0 0 120 -3,-0.1 2,-0.3 -4,-0.1 -1,-0.1 -0.601 82.8 -32.7 -78.7 91.1 -21.9 8.7 -4.3 7 7 A G S S- 0 0 54 -2,-1.5 2,-0.2 2,-0.1 -2,-0.1 -0.688 90.8 -57.7 100.9-154.6 -18.5 8.0 -5.7 8 8 A E - 0 0 184 -2,-0.3 2,-1.1 0, 0.0 -2,-0.0 -0.760 56.6 -80.6-126.3 172.7 -15.3 7.3 -3.9 9 9 A R - 0 0 216 -2,-0.2 -2,-0.1 1,-0.0 0, 0.0 -0.635 50.3-137.6 -78.5 100.5 -13.1 9.0 -1.3 10 10 A R + 0 0 216 -2,-1.1 -1,-0.0 1,-0.0 -3,-0.0 -0.232 32.6 166.8 -57.5 144.1 -11.0 11.5 -3.3 11 11 A A - 0 0 77 2,-0.0 -1,-0.0 0, 0.0 -2,-0.0 -0.979 31.8-111.0-161.6 148.3 -7.3 11.7 -2.4 12 12 A P - 0 0 102 0, 0.0 2,-0.4 0, 0.0 0, 0.0 0.023 28.9-120.2 -69.7-177.9 -4.0 13.1 -3.7 13 13 A R + 0 0 185 49,-0.0 2,-0.3 50,-0.0 46,-0.1 -0.934 53.0 116.4-135.3 111.3 -1.1 11.1 -5.0 14 14 A K + 0 0 142 -2,-0.4 2,-0.2 45,-0.1 46,-0.0 -0.904 27.9 83.3-171.5 141.5 2.4 11.3 -3.4 15 15 A G - 0 0 14 -2,-0.3 47,-0.4 1,-0.1 48,-0.2 -0.523 43.8-140.4 137.3 155.2 4.8 9.2 -1.5 16 16 A N S S+ 0 0 35 71,-0.2 40,-2.0 -2,-0.2 2,-0.2 0.763 81.8 58.9-110.5 -48.4 7.6 6.6 -2.0 17 17 A T E -A 55 0A 26 38,-0.2 67,-0.4 67,-0.1 2,-0.4 -0.485 66.4-154.9 -84.8 156.1 7.1 4.0 0.8 18 18 A L E -A 54 0A 0 36,-0.6 36,-1.5 65,-0.2 2,-0.8 -0.994 13.5-133.4-136.8 130.0 3.9 2.0 1.2 19 19 A Y E -AB 53 82A 84 63,-3.0 63,-1.4 -2,-0.4 2,-0.4 -0.716 30.4-175.9 -84.8 110.2 2.5 0.4 4.3 20 20 A V E -AB 52 81A 0 32,-2.8 32,-2.8 -2,-0.8 2,-0.4 -0.840 7.3-169.7-109.1 144.8 1.4 -3.2 3.5 21 21 A Y E +AB 51 80A 88 59,-1.5 59,-2.4 -2,-0.4 30,-0.2 -0.996 16.1 150.0-136.8 131.1 -0.3 -5.7 5.9 22 22 A G - 0 0 0 28,-2.2 57,-0.1 -2,-0.4 55,-0.0 -0.758 35.1-148.1-142.7-171.1 -0.9 -9.4 5.4 23 23 A E S S+ 0 0 141 -2,-0.2 -1,-0.1 55,-0.1 56,-0.1 0.582 96.0 20.0-131.0 -49.3 -1.3 -12.7 7.2 24 24 A D S S+ 0 0 134 54,-0.1 2,-0.3 2,-0.1 26,-0.0 -0.211 95.8 118.3-120.6 40.7 -0.0 -15.5 5.0 25 25 A M - 0 0 17 53,-0.1 -3,-0.1 25,-0.1 3,-0.0 -0.823 46.4-152.1-110.0 148.8 2.2 -13.5 2.7 26 26 A T >> - 0 0 84 -2,-0.3 4,-1.8 1,-0.1 3,-0.9 -0.852 26.7-114.0-119.5 155.0 6.0 -13.7 2.2 27 27 A P H 3> S+ 0 0 63 0, 0.0 4,-1.8 0, 0.0 3,-0.2 0.928 117.2 52.9 -47.9 -56.4 8.6 -11.2 1.2 28 28 A T H 3> S+ 0 0 116 1,-0.2 4,-1.0 2,-0.2 5,-0.1 0.797 107.5 56.0 -52.5 -29.5 9.4 -13.0 -2.1 29 29 A L H X> S+ 0 0 30 -3,-0.9 4,-1.0 1,-0.2 3,-0.6 0.949 104.3 48.8 -69.1 -50.8 5.7 -12.8 -2.8 30 30 A L H 3X S+ 0 0 0 -4,-1.8 4,-3.1 1,-0.2 5,-0.5 0.803 102.0 67.6 -59.4 -29.4 5.4 -9.1 -2.5 31 31 A R H 3X S+ 0 0 157 -4,-1.8 4,-1.1 1,-0.2 -1,-0.2 0.926 110.1 32.3 -57.3 -47.6 8.4 -8.8 -4.8 32 32 A G H << S+ 0 0 51 -4,-1.0 -1,-0.2 -3,-0.6 -2,-0.2 0.536 119.6 55.6 -87.5 -7.1 6.4 -10.1 -7.7 33 33 A A H < S+ 0 0 14 -4,-1.0 -2,-0.2 2,-0.1 -3,-0.2 0.790 117.7 30.8 -92.3 -34.2 3.2 -8.5 -6.4 34 34 A F H >X S+ 0 0 0 -4,-3.1 4,-1.4 -5,-0.2 3,-0.8 0.647 106.6 73.8 -96.6 -20.0 4.5 -5.0 -6.2 35 35 A S T 3< S+ 0 0 64 -4,-1.1 3,-0.3 -5,-0.5 -3,-0.1 0.921 85.9 64.3 -58.9 -46.0 6.9 -5.3 -9.1 36 36 A P T 34 S+ 0 0 95 0, 0.0 -1,-0.2 0, 0.0 -2,-0.1 0.800 105.2 47.0 -48.1 -32.7 4.1 -5.3 -11.7 37 37 A F T <4 S- 0 0 46 -3,-0.8 2,-0.2 1,-0.2 -2,-0.2 0.864 131.2 -60.1 -79.2 -38.6 3.4 -1.7 -10.5 38 38 A G S < S- 0 0 26 -4,-1.4 2,-0.5 -3,-0.3 -1,-0.2 -0.858 75.1 -36.9-174.1-150.9 7.0 -0.6 -10.6 39 39 A N - 0 0 88 -2,-0.2 18,-1.6 -3,-0.1 2,-0.7 -0.868 45.7-139.8-104.0 129.7 10.5 -1.2 -9.3 40 40 A I E +C 56 0A 26 -2,-0.5 16,-0.2 16,-0.2 3,-0.2 -0.780 30.6 162.3 -91.0 114.2 11.0 -2.2 -5.6 41 41 A I E S+ 0 0 74 14,-1.7 2,-0.3 -2,-0.7 -1,-0.2 0.655 74.3 30.2-101.1 -22.5 14.1 -0.4 -4.1 42 42 A D E +C 55 0A 88 13,-0.8 13,-2.5 2,-0.0 2,-0.5 -0.872 65.4 161.9-143.6 106.4 13.1 -1.0 -0.5 43 43 A L E +C 54 0A 41 -2,-0.3 2,-0.4 11,-0.2 11,-0.2 -0.943 8.2 166.2-130.3 111.5 11.1 -4.0 0.6 44 44 A S E -C 53 0A 61 9,-1.5 9,-2.6 -2,-0.5 2,-0.4 -0.952 17.6-155.1-126.4 144.9 11.1 -5.1 4.3 45 45 A M E -C 52 0A 39 -2,-0.4 7,-0.2 7,-0.2 -2,-0.0 -0.941 2.8-161.0-121.1 141.6 8.9 -7.5 6.2 46 46 A D E >> -C 51 0A 67 5,-2.7 4,-1.4 -2,-0.4 5,-1.4 -0.850 3.2-170.2-125.1 95.6 8.0 -7.6 9.9 47 47 A P T 45S+ 0 0 101 0, 0.0 -1,-0.1 0, 0.0 3,-0.1 0.872 84.9 62.9 -48.0 -43.4 6.6 -11.0 11.1 48 48 A P T 45S+ 0 0 103 0, 0.0 -2,-0.0 0, 0.0 0, 0.0 0.951 120.1 20.6 -47.9 -64.4 5.7 -9.4 14.4 49 49 A R T 45S- 0 0 182 -3,-0.2 3,-0.1 2,-0.1 -3,-0.0 0.411 104.7-128.6 -87.8 1.2 3.2 -6.9 13.1 50 50 A N T <5 + 0 0 67 -4,-1.4 -28,-2.2 1,-0.2 2,-0.2 0.924 64.8 128.3 50.4 51.1 2.8 -9.0 9.9 51 51 A C E < -AC 21 46A 2 -5,-1.4 -5,-2.7 -30,-0.2 2,-0.3 -0.757 45.5-149.9-128.2 174.7 3.5 -6.0 7.7 52 52 A A E -AC 20 45A 0 -32,-2.8 -32,-2.8 -7,-0.2 2,-0.7 -0.980 7.8-146.9-151.7 136.0 5.7 -5.0 4.8 53 53 A F E -AC 19 44A 57 -9,-2.6 -9,-1.5 -2,-0.3 2,-0.6 -0.869 20.3-176.9-108.0 102.8 7.2 -1.8 3.6 54 54 A V E -AC 18 43A 0 -36,-1.5 -36,-0.6 -2,-0.7 2,-0.4 -0.878 6.8-162.0-103.5 121.9 7.5 -1.6 -0.2 55 55 A T E -AC 17 42A 4 -13,-2.5 -14,-1.7 -2,-0.6 -13,-0.8 -0.850 6.4-146.6-105.3 136.9 9.2 1.4 -1.8 56 56 A Y E - C 0 40A 3 -40,-2.0 -16,-0.2 -2,-0.4 6,-0.1 -0.790 20.9-127.0-103.0 144.2 8.8 2.4 -5.4 57 57 A E S S+ 0 0 111 -18,-1.6 2,-0.3 -2,-0.3 -1,-0.1 0.742 99.1 37.9 -57.4 -22.5 11.4 4.1 -7.5 58 58 A K S > S- 0 0 121 -19,-0.2 4,-0.8 -42,-0.1 -2,-0.2 -0.865 75.9-131.8-128.3 162.6 8.8 6.6 -8.3 59 59 A M H > S+ 0 0 117 -2,-0.3 4,-1.3 1,-0.2 5,-0.2 0.748 101.0 71.3 -83.3 -26.1 5.9 8.3 -6.5 60 60 A E H > S+ 0 0 107 1,-0.2 4,-1.4 2,-0.2 -1,-0.2 0.859 99.3 48.7 -57.6 -36.7 3.4 7.7 -9.2 61 61 A S H > S+ 0 0 8 2,-0.2 4,-2.5 1,-0.2 5,-0.4 0.911 98.3 67.7 -70.4 -43.8 3.5 4.0 -8.3 62 62 A A H X S+ 0 0 0 -4,-0.8 4,-1.8 -47,-0.4 -1,-0.2 0.896 108.4 37.9 -41.0 -54.4 3.0 4.7 -4.5 63 63 A D H X S+ 0 0 30 -4,-1.3 4,-0.8 -48,-0.2 -1,-0.3 0.883 114.8 57.1 -67.2 -39.4 -0.5 5.9 -5.2 64 64 A Q H >X S+ 0 0 90 -4,-1.4 4,-2.2 -5,-0.2 3,-2.0 0.982 109.4 41.4 -54.9 -66.5 -1.1 3.3 -7.9 65 65 A A H 3X>S+ 0 0 0 -4,-2.5 4,-1.3 1,-0.3 5,-1.1 0.925 112.5 54.5 -47.4 -54.3 -0.4 0.2 -5.7 66 66 A V H 3<5S+ 0 0 21 -4,-1.8 -1,-0.3 -5,-0.4 -2,-0.2 0.704 112.3 47.7 -55.1 -18.8 -2.3 1.8 -2.8 67 67 A A H <<5S+ 0 0 56 -3,-2.0 -1,-0.2 -4,-0.8 -2,-0.2 0.834 130.5 16.5 -90.3 -39.2 -5.2 2.1 -5.3 68 68 A E H <5S+ 0 0 133 -4,-2.2 -3,-0.2 -3,-0.2 -2,-0.2 0.875 126.1 50.2 -97.8 -58.9 -5.0 -1.5 -6.7 69 69 A L T ><5S+ 0 0 6 -4,-1.3 3,-1.5 -5,-0.2 2,-0.6 0.670 89.1 107.9 -55.7 -14.9 -3.0 -3.5 -4.2 70 70 A N T 3 +D 77 0B 29 3,-2.0 3,-1.5 -2,-0.8 -41,-0.1 -0.867 65.8 0.7-109.4 140.5 -3.0 -11.9 -4.5 75 75 A E T 3 S- 0 0 142 -2,-0.4 -1,-0.2 1,-0.3 3,-0.1 0.854 130.9 -60.1 54.8 36.5 -1.7 -15.4 -4.2 76 76 A S T 3 S+ 0 0 109 -3,-0.3 2,-0.4 1,-0.2 -1,-0.3 0.789 119.6 111.3 62.7 27.7 -4.8 -16.3 -2.3 77 77 A V E < -D 74 0B 16 -3,-1.5 -3,-2.0 -54,-0.0 2,-0.7 -0.979 68.7-131.1-138.0 123.7 -3.8 -13.7 0.3 78 78 A Q E -D 73 0B 136 -2,-0.4 2,-0.4 -5,-0.3 -5,-0.3 -0.611 26.6-161.5 -75.5 113.1 -5.6 -10.4 1.0 79 79 A L E -D 72 0B 0 -7,-2.9 -7,-1.0 -2,-0.7 -8,-0.9 -0.829 6.1-156.4-100.3 132.3 -2.9 -7.6 1.0 80 80 A K E -B 21 0A 126 -59,-2.4 -59,-1.5 -2,-0.4 2,-0.3 -0.889 15.8-178.3-111.4 104.3 -3.7 -4.2 2.6 81 81 A V E +B 20 0A 2 -2,-0.7 2,-0.3 -12,-0.3 -61,-0.2 -0.768 4.3 170.6-102.8 147.1 -1.5 -1.4 1.2 82 82 A N E -B 19 0A 101 -63,-1.4 -63,-3.0 -2,-0.3 2,-1.3 -0.981 44.3 -91.7-150.8 159.1 -1.6 2.2 2.4 83 83 A I - 0 0 49 -2,-0.3 -65,-0.2 -65,-0.2 4,-0.1 -0.600 51.5-124.5 -76.9 95.1 0.3 5.5 2.0 84 84 A A - 0 0 22 -2,-1.3 3,-0.4 -67,-0.4 2,-0.3 0.021 25.0-124.8 -37.8 140.2 2.8 5.3 4.9 85 85 A R S S+ 0 0 215 1,-0.2 -1,-0.1 -70,-0.0 -70,-0.0 -0.720 84.8 26.1 -96.4 144.9 2.5 8.4 7.1 86 86 A K S S+ 0 0 178 -2,-0.3 -1,-0.2 1,-0.2 -2,-0.1 0.924 74.9 147.2 73.2 46.5 5.5 10.7 7.9 87 87 A Q + 0 0 41 -3,-0.4 -71,-0.2 -4,-0.1 3,-0.2 -0.704 22.5 177.9-116.6 78.9 7.4 9.9 4.8 88 88 A P - 0 0 94 0, 0.0 2,-0.3 0, 0.0 -72,-0.1 -0.017 51.1 -49.0 -69.8 179.0 9.3 13.1 3.8 89 89 A M - 0 0 190 -73,-0.0 2,-0.4 -74,-0.0 0, 0.0 -0.338 68.6-174.4 -55.3 112.1 11.7 13.5 0.9 90 90 A L - 0 0 120 -2,-0.3 -1,-0.0 -3,-0.2 -3,-0.0 -0.896 30.8 -94.4-115.6 143.8 14.1 10.5 1.2 91 91 A D - 0 0 135 -2,-0.4 -1,-0.1 1,-0.1 0, 0.0 -0.099 26.7-160.3 -50.5 148.9 17.2 9.8 -0.9 92 92 A S S S+ 0 0 74 1,-0.2 -1,-0.1 -35,-0.0 -2,-0.0 0.762 82.4 42.0-102.6 -36.8 16.6 7.6 -3.9 93 93 A G S S- 0 0 69 0, 0.0 2,-0.4 0, 0.0 -1,-0.2 -0.710 75.1-166.5-117.0 81.2 20.1 6.4 -4.6 94 94 A P + 0 0 97 0, 0.0 3,-0.3 0, 0.0 0, 0.0 -0.520 13.0 173.1 -69.7 119.9 21.8 5.6 -1.2 95 95 A S S S+ 0 0 126 -2,-0.4 2,-0.7 1,-0.2 0, 0.0 0.889 77.3 47.8 -92.1 -51.4 25.6 5.2 -1.6 96 96 A S 0 0 122 1,-0.2 -1,-0.2 0, 0.0 0, 0.0 -0.126 360.0 360.0 -83.7 39.8 26.7 4.8 2.0 97 97 A G 0 0 107 -2,-0.7 -1,-0.2 -3,-0.3 -2,-0.0 0.411 360.0 360.0 -40.1 360.0 24.0 2.3 2.6