==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=20-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA BINDING PROTEIN 17-MAY-05 1X6H . COMPND 2 MOLECULE: TRANSCRIPTIONAL REPRESSOR CTCF; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR M.SATO,K.SAITO,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA,RIKEN . 86 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 8080.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 38 44.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 6 7.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 2 2.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 8 9.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 4 4.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 17 19.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G >> 0 0 89 0, 0.0 4,-1.2 0, 0.0 3,-0.6 0.000 360.0 360.0 360.0 51.2 -23.8 -13.2 17.0 2 2 A S T 34 + 0 0 107 1,-0.2 4,-0.1 2,-0.2 0, 0.0 -0.481 360.0 5.5 -87.8 160.0 -22.1 -10.4 18.9 3 3 A S T 34 S+ 0 0 136 1,-0.2 -1,-0.2 -2,-0.1 3,-0.1 0.821 130.8 59.8 35.0 42.1 -18.6 -10.4 20.3 4 4 A G T <4 S+ 0 0 75 -3,-0.6 2,-0.4 1,-0.1 -1,-0.2 0.358 105.0 25.6-156.9 -44.0 -18.2 -13.8 18.5 5 5 A S < + 0 0 45 -4,-1.2 2,-0.4 4,-0.0 -1,-0.1 -0.960 60.2 164.6-141.1 119.7 -18.8 -13.5 14.8 6 6 A S + 0 0 117 -2,-0.4 2,-0.2 -4,-0.1 4,-0.1 -0.999 64.0 12.7-137.7 135.6 -18.3 -10.4 12.6 7 7 A G S > S+ 0 0 46 -2,-0.4 3,-0.6 2,-0.0 -2,-0.0 -0.240 98.7 91.1 98.6 -45.3 -18.0 -10.0 8.9 8 8 A R T 3 S+ 0 0 197 1,-0.3 2,-0.4 -2,-0.2 -2,-0.0 0.943 108.9 5.1 -46.6 -60.8 -19.2 -13.5 8.0 9 9 A T T 3 S+ 0 0 110 -4,-0.1 -1,-0.3 2,-0.0 2,-0.2 -0.754 98.3 108.2-132.5 87.0 -22.8 -12.3 7.8 10 10 A H < - 0 0 136 -3,-0.6 2,-0.8 -2,-0.4 -4,-0.0 -0.724 46.5-154.5-163.8 107.1 -23.3 -8.6 8.2 11 11 A T + 0 0 123 -2,-0.2 2,-0.6 75,-0.0 -2,-0.0 -0.754 18.7 179.5 -88.8 110.8 -24.2 -6.1 5.4 12 12 A G - 0 0 38 -2,-0.8 -2,-0.0 0, 0.0 -1,-0.0 -0.930 37.2-112.7-117.9 112.8 -23.0 -2.6 6.3 13 13 A E - 0 0 196 -2,-0.6 12,-0.1 1,-0.2 -2,-0.0 -0.131 46.1-105.7 -41.7 105.3 -23.6 0.2 3.9 14 14 A K - 0 0 92 1,-0.2 12,-0.2 10,-0.1 -1,-0.2 -0.109 35.2-166.2 -40.9 106.9 -20.0 1.0 2.7 15 15 A P + 0 0 97 0, 0.0 2,-1.0 0, 0.0 -1,-0.2 0.804 69.5 80.7 -69.8 -30.6 -19.3 4.2 4.6 16 16 A Y E +A 25 0A 79 9,-1.6 9,-2.6 10,-0.2 2,-0.6 -0.697 61.3 176.2 -83.7 103.7 -16.2 4.9 2.5 17 17 A A E -A 24 0A 56 -2,-1.0 7,-0.3 7,-0.2 5,-0.0 -0.928 29.1-125.0-114.3 112.7 -17.5 6.4 -0.7 18 18 A C - 0 0 13 5,-1.8 5,-0.1 -2,-0.6 14,-0.0 -0.137 10.9-153.2 -51.5 145.4 -14.8 7.6 -3.2 19 19 A S S S+ 0 0 120 1,-0.1 -1,-0.1 3,-0.1 -2,-0.0 0.820 91.3 55.4 -90.9 -37.4 -15.1 11.2 -4.3 20 20 A H S S+ 0 0 133 2,-0.0 2,-0.2 3,-0.0 -1,-0.1 0.909 123.0 13.7 -62.0 -43.7 -13.5 10.8 -7.8 21 21 A C S S- 0 0 40 2,-0.1 2,-0.5 0, 0.0 0, 0.0 -0.670 86.3 -99.4-124.7 179.9 -15.9 8.1 -8.8 22 22 A D S S+ 0 0 158 -2,-0.2 2,-0.3 -5,-0.0 -3,-0.1 -0.314 77.4 124.1 -97.5 49.3 -19.2 6.6 -7.6 23 23 A K - 0 0 108 -2,-0.5 -5,-1.8 -5,-0.1 2,-0.3 -0.788 40.8-161.9-110.2 153.7 -17.6 3.7 -5.8 24 24 A T E -A 17 0A 61 -2,-0.3 2,-0.3 -7,-0.3 -7,-0.2 -0.930 5.3-173.2-133.4 157.1 -17.9 2.5 -2.2 25 25 A F E -A 16 0A 27 -9,-2.6 -9,-1.6 -2,-0.3 3,-0.1 -0.986 27.2-134.8-148.4 155.5 -16.0 0.3 0.2 26 26 A R S S+ 0 0 137 -2,-0.3 2,-0.4 -12,-0.2 -10,-0.2 0.973 93.4 36.6 -74.2 -58.2 -16.3 -1.2 3.7 27 27 A Q S >> S- 0 0 123 1,-0.1 3,-1.4 -12,-0.1 4,-1.2 -0.792 80.4-127.2-100.8 140.5 -12.8 -0.5 5.0 28 28 A K H 3> S+ 0 0 125 -2,-0.4 4,-2.3 1,-0.3 3,-0.4 0.907 107.1 68.3 -47.3 -49.5 -10.8 2.6 4.1 29 29 A Q H 3> S+ 0 0 147 1,-0.3 4,-2.6 2,-0.2 5,-0.3 0.850 99.6 51.1 -38.4 -45.4 -7.9 0.4 2.9 30 30 A L H <> S+ 0 0 65 -3,-1.4 4,-2.2 1,-0.2 -1,-0.3 0.949 112.9 42.5 -60.3 -51.5 -10.1 -0.7 0.0 31 31 A L H X S+ 0 0 33 -4,-1.2 4,-0.8 -3,-0.4 -1,-0.2 0.663 114.7 55.1 -69.7 -15.5 -11.0 2.9 -1.0 32 32 A D H X S+ 0 0 106 -4,-2.3 4,-1.3 -5,-0.2 -2,-0.2 0.867 113.6 36.6 -83.9 -41.2 -7.3 3.7 -0.5 33 33 A M H X S+ 0 0 50 -4,-2.6 4,-0.6 -5,-0.3 -2,-0.2 0.746 110.1 64.4 -82.2 -25.6 -5.9 1.1 -2.8 34 34 A H H X>S+ 0 0 9 -4,-2.2 4,-3.3 -5,-0.3 5,-0.5 0.902 105.6 43.9 -63.9 -42.3 -8.8 1.5 -5.3 35 35 A F H <>S+ 0 0 59 -4,-0.8 5,-0.9 1,-0.2 4,-0.2 0.971 114.7 46.0 -67.3 -55.8 -7.8 5.1 -6.1 36 36 A K H <5S+ 0 0 112 -4,-1.3 7,-2.0 3,-0.2 -1,-0.2 0.595 120.6 45.9 -63.9 -8.8 -4.1 4.4 -6.4 37 37 A R H <5S+ 0 0 88 -4,-0.6 -2,-0.2 5,-0.2 -3,-0.2 0.882 127.3 17.9 -97.1 -61.4 -5.1 1.4 -8.5 38 38 A Y T <5S+ 0 0 135 -4,-3.3 -3,-0.2 1,-0.2 -2,-0.1 0.985 131.4 42.3 -75.7 -66.5 -7.7 2.7 -10.9 39 39 A H T - 0 0 149 -11,-0.2 4,-2.7 1,-0.1 5,-0.2 -0.888 65.5-152.6-155.7 119.5 2.5 -13.0 -3.9 60 60 A R H > S+ 0 0 146 -2,-0.3 4,-2.3 2,-0.2 5,-0.1 0.942 102.1 42.1 -54.5 -52.4 4.4 -14.3 -6.9 61 61 A N H > S+ 0 0 87 2,-0.2 4,-2.3 1,-0.2 5,-0.2 0.984 113.9 49.9 -59.2 -62.2 7.2 -15.8 -4.7 62 62 A T H > S+ 0 0 60 1,-0.2 4,-2.4 2,-0.2 -2,-0.2 0.909 111.6 49.7 -42.2 -56.6 4.9 -17.2 -2.0 63 63 A M H X S+ 0 0 37 -4,-2.7 4,-2.6 1,-0.2 -1,-0.2 0.944 107.5 53.4 -49.4 -57.2 2.8 -18.9 -4.6 64 64 A A H X S+ 0 0 43 -4,-2.3 4,-1.2 1,-0.2 -1,-0.2 0.887 109.7 49.4 -45.9 -46.6 5.8 -20.5 -6.3 65 65 A R H >X S+ 0 0 198 -4,-2.3 4,-1.4 1,-0.2 3,-0.5 0.926 108.8 52.0 -60.8 -46.8 6.9 -21.9 -3.0 66 66 A H H 3X S+ 0 0 49 -4,-2.4 4,-1.3 1,-0.2 -2,-0.2 0.926 100.3 62.4 -55.9 -48.2 3.5 -23.4 -2.3 67 67 A A H 3< S+ 0 0 17 -4,-2.6 3,-0.4 1,-0.2 -1,-0.2 0.871 101.7 53.3 -45.2 -44.0 3.4 -25.1 -5.6 68 68 A D H << S+ 0 0 143 -4,-1.2 -1,-0.2 -3,-0.5 -2,-0.2 0.954 118.1 33.4 -58.1 -53.6 6.4 -27.1 -4.5 69 69 A N H < S+ 0 0 157 -4,-1.4 2,-0.4 -3,-0.1 -1,-0.3 0.426 99.4 112.4 -83.0 1.3 4.7 -28.3 -1.3 70 70 A C < - 0 0 13 -4,-1.3 -3,-0.0 -3,-0.4 -4,-0.0 -0.614 43.7-176.7 -79.5 130.1 1.4 -28.3 -3.2 71 71 A A - 0 0 106 -2,-0.4 -1,-0.2 1,-0.3 3,-0.1 0.849 48.5 -93.0 -92.1 -42.6 -0.1 -31.8 -3.7 72 72 A G - 0 0 19 1,-0.1 -1,-0.3 2,-0.0 -19,-0.3 -0.966 47.5 -54.5 156.0-170.6 -3.1 -30.8 -5.7 73 73 A P - 0 0 79 0, 0.0 -20,-0.1 0, 0.0 -1,-0.1 0.828 50.8-166.9 -69.7 -33.4 -6.8 -29.9 -5.6 74 74 A D + 0 0 167 -3,-0.1 2,-0.3 1,-0.1 -21,-0.0 0.846 67.3 15.2 46.1 38.5 -7.7 -33.1 -3.7 75 75 A G S S- 0 0 51 2,-0.1 2,-0.6 -22,-0.1 -1,-0.1 -0.920 92.5 -78.6 155.7-179.9 -11.4 -32.4 -4.6 76 76 A V + 0 0 142 -2,-0.3 2,-0.3 3,-0.0 3,-0.1 -0.904 61.9 132.1-119.4 103.9 -13.8 -30.4 -6.7 77 77 A E + 0 0 188 -2,-0.6 3,-0.1 1,-0.1 -2,-0.1 -0.859 17.9 95.6-140.7 174.5 -14.3 -26.8 -5.7 78 78 A G + 0 0 68 -2,-0.3 2,-0.4 1,-0.2 -1,-0.1 0.735 56.6 116.8 109.1 35.1 -14.4 -23.2 -7.1 79 79 A E + 0 0 178 -3,-0.1 2,-0.3 2,-0.0 -1,-0.2 -0.935 28.7 131.3-138.9 113.4 -18.1 -22.7 -7.7 80 80 A N + 0 0 160 -2,-0.4 2,-0.3 -3,-0.1 -3,-0.0 -0.990 17.7 171.3-157.0 156.7 -20.1 -20.0 -6.0 81 81 A S - 0 0 104 -2,-0.3 -2,-0.0 2,-0.0 0, 0.0 -0.886 12.9-171.7-170.4 136.4 -22.6 -17.2 -6.7 82 82 A G - 0 0 67 -2,-0.3 2,-0.9 2,-0.1 -2,-0.0 -0.612 10.1-169.0-136.8 77.1 -24.9 -14.8 -4.7 83 83 A P + 0 0 120 0, 0.0 2,-0.3 0, 0.0 -2,-0.0 -0.532 36.1 129.2 -69.7 102.1 -27.2 -12.8 -7.0 84 84 A S - 0 0 115 -2,-0.9 -2,-0.1 1,-0.1 0, 0.0 -0.883 57.1-132.8-145.8 175.7 -28.7 -10.2 -4.7 85 85 A S 0 0 131 -2,-0.3 -1,-0.1 1,-0.2 0, 0.0 0.856 360.0 360.0 -99.3 -53.6 -29.3 -6.5 -4.4 86 86 A G 0 0 111 -73,-0.0 -1,-0.2 -75,-0.0 -75,-0.0 -0.850 360.0 360.0 107.3 360.0 -28.2 -5.6 -0.8