==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=7-AUG-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER VIRAL PROTEIN 22-SEP-04 1XJ1 . COMPND 2 MOLECULE: CYSTEINE-RICH OMEGA-CONOTOXIN HOMOLOG VHV1.1; . SOURCE 2 ORGANISM_SCIENTIFIC: CAMPOLETIS SONORENSIS ICHNOVIRUS; . AUTHOR J.EINERWOLD,J.JASEJA,K.HAPNER,B.WEBB,V.COPIE . 47 1 3 3 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4339.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 24 51.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 13 27.7 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 1 2.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 8 17.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 6 A T 0 0 182 0, 0.0 15,-0.4 0, 0.0 2,-0.3 0.000 360.0 360.0 360.0 41.7 -9.8 -1.7 -7.3 2 7 A a - 0 0 64 13,-0.3 14,-0.2 14,-0.0 2,-0.1 -0.937 360.0-120.7-166.1 140.0 -7.2 -1.7 -4.5 3 8 A I - 0 0 28 12,-0.3 14,-2.4 -2,-0.3 3,-0.1 -0.360 22.5-125.4 -79.8 160.7 -6.8 -3.0 -1.0 4 9 A G - 0 0 42 1,-0.2 2,-0.3 12,-0.1 13,-0.1 0.972 64.6 -47.6 -69.1 -87.2 -6.3 -0.9 2.1 5 10 A H S S+ 0 0 126 1,-0.1 38,-0.2 11,-0.1 -1,-0.2 -0.965 111.3 11.4-158.0 138.4 -3.1 -2.1 3.9 6 11 A Y S S+ 0 0 157 36,-2.0 2,-0.2 -2,-0.3 37,-0.2 0.971 86.3 144.4 59.3 58.0 -1.6 -5.4 5.0 7 12 A Q E -A 42 0A 99 35,-1.1 35,-2.7 -3,-0.1 2,-0.5 -0.727 58.0 -82.4-121.2 171.3 -4.1 -7.6 3.0 8 13 A K E -A 41 0A 101 33,-0.3 3,-0.3 -2,-0.2 33,-0.3 -0.640 33.1-176.3 -79.4 120.7 -3.9 -10.9 1.2 9 14 A b + 0 0 20 31,-1.7 3,-0.4 -2,-0.5 32,-0.2 0.078 66.9 87.0-101.8 21.5 -2.5 -10.5 -2.3 10 15 A V S S+ 0 0 92 30,-0.4 -1,-0.2 1,-0.2 3,-0.1 -0.056 82.2 56.9-109.6 30.3 -3.0 -14.1 -3.2 11 16 A N S S+ 0 0 129 -3,-0.3 2,-0.3 2,-0.0 -1,-0.2 0.008 111.1 14.8-147.8 29.7 -6.6 -13.8 -4.4 12 17 A A S S- 0 0 68 -3,-0.4 -3,-0.0 1,-0.2 -1,-0.0 -0.959 89.4 -74.8-177.3-170.2 -6.4 -11.1 -7.1 13 18 A D S S- 0 0 155 -2,-0.3 -1,-0.2 -3,-0.1 -4,-0.0 0.990 89.4 -59.5 -71.2 -77.5 -4.2 -9.2 -9.5 14 19 A K + 0 0 148 -13,-0.1 2,-0.5 -3,-0.1 -5,-0.1 -0.079 60.5 179.4-170.7 52.9 -2.4 -6.7 -7.3 15 20 A P + 0 0 27 0, 0.0 -12,-0.3 0, 0.0 2,-0.3 -0.518 18.6 148.5 -68.8 114.3 -4.9 -4.3 -5.6 16 21 A c - 0 0 27 -2,-0.5 16,-0.3 -15,-0.4 -12,-0.1 -0.798 28.7-155.9-153.0 104.5 -3.0 -1.8 -3.5 17 22 A a - 0 0 38 -14,-2.4 2,-0.3 -2,-0.3 15,-0.2 0.067 13.7-135.5 -67.1-175.5 -4.1 1.7 -2.8 18 23 A S - 0 0 62 13,-0.1 2,-0.6 -16,-0.1 13,-0.2 -0.998 4.2-143.6-148.5 145.9 -1.9 4.6 -1.8 19 24 A K E +C 30 0B 153 11,-1.8 11,-3.3 -2,-0.3 2,-0.8 -0.901 18.6 177.6-115.7 104.5 -1.9 7.4 0.7 20 25 A T E -C 29 0B 88 -2,-0.6 9,-0.2 9,-0.3 -2,-0.0 -0.825 12.0-172.1-109.1 93.8 -0.4 10.7 -0.5 21 26 A V E -C 28 0B 90 7,-1.3 7,-0.6 -2,-0.8 2,-0.3 -0.261 2.3-160.6 -78.3 168.9 -0.7 13.4 2.2 22 27 A R + 0 0 205 5,-0.2 5,-0.1 1,-0.1 3,-0.1 -0.844 30.7 152.0-141.7 177.4 0.1 17.1 1.7 23 28 A Y - 0 0 232 -2,-0.3 2,-0.2 3,-0.2 4,-0.1 0.136 64.8 -79.0-174.0 -46.0 0.9 20.2 3.7 24 29 A G S S+ 0 0 38 2,-1.2 -1,-0.2 0, 0.0 0, 0.0 -0.659 104.2 12.6 169.3-107.6 3.1 22.6 1.7 25 30 A D S S+ 0 0 176 -2,-0.2 2,-0.3 -3,-0.1 0, 0.0 0.851 121.1 61.2 -69.0 -35.5 6.8 22.5 1.0 26 31 A S - 0 0 93 2,-0.0 -2,-1.2 -4,-0.0 2,-0.4 -0.744 65.9-177.7 -96.7 142.0 7.1 18.9 2.3 27 32 A K - 0 0 149 -2,-0.3 2,-0.5 -4,-0.1 -5,-0.2 -0.994 9.1-166.5-142.6 132.8 5.2 16.0 0.7 28 33 A N E -C 21 0B 112 -7,-0.6 -7,-1.3 -2,-0.4 2,-0.6 -0.974 3.2-165.5-123.8 123.6 5.0 12.4 1.7 29 34 A V E -C 20 0B 75 -2,-0.5 2,-0.5 -9,-0.2 -9,-0.3 -0.927 7.6-155.4-111.9 117.0 3.6 9.7 -0.6 30 35 A R E -C 19 0B 115 -11,-3.3 -11,-1.8 -2,-0.6 2,-0.2 -0.793 13.9-169.3 -93.9 125.0 2.8 6.3 0.9 31 36 A K E -B 45 0A 99 14,-2.0 14,-2.7 -2,-0.5 2,-0.4 -0.641 12.2-147.1-108.6 167.4 2.8 3.3 -1.4 32 37 A F E -B 44 0A 21 -16,-0.3 2,-0.2 12,-0.3 -29,-0.1 -0.918 16.6-177.2-140.8 111.2 1.6 -0.3 -1.1 33 38 A I E -B 43 0A 39 10,-1.6 10,-1.6 -2,-0.4 2,-0.7 -0.591 30.5-111.8-103.2 167.0 3.3 -3.2 -2.8 34 39 A b E -B 42 0A 21 8,-0.2 2,-0.4 -2,-0.2 8,-0.3 -0.868 31.9-164.4-103.5 107.4 2.4 -6.9 -2.8 35 40 A D E +B 41 0A 71 6,-2.1 6,-1.3 -2,-0.7 -26,-0.2 -0.757 18.7 173.2 -94.2 135.2 5.0 -9.0 -1.0 36 41 A R + 0 0 195 -2,-0.4 4,-0.2 4,-0.2 -1,-0.1 0.635 68.8 77.9-109.4 -24.7 5.1 -12.8 -1.5 37 42 A D S S+ 0 0 158 2,-0.1 -1,-0.1 3,-0.0 -2,-0.0 0.847 104.7 36.3 -54.5 -35.9 8.3 -13.6 0.4 38 43 A G S S- 0 0 49 3,-0.1 -2,-0.1 1,-0.0 0, 0.0 0.708 137.1 -41.7 -84.0-113.1 6.3 -13.2 3.6 39 44 A E S S- 0 0 178 -4,-0.1 -3,-0.1 2,-0.1 -2,-0.1 0.006 86.3 -96.5-109.9 26.0 2.7 -14.4 3.9 40 45 A G S S+ 0 0 7 1,-0.2 -31,-1.7 -4,-0.2 -30,-0.4 0.985 78.4 137.2 58.6 63.8 1.7 -13.1 0.5 41 46 A V E -AB 8 35A 40 -6,-1.3 -6,-2.1 -33,-0.3 2,-0.6 -0.969 57.3-111.3-139.6 155.4 0.2 -9.8 1.6 42 47 A c E +AB 7 34A 2 -35,-2.7 -36,-2.0 -2,-0.3 -35,-1.1 -0.768 43.0 171.4 -90.1 121.3 0.2 -6.2 0.5 43 48 A V E - B 0 33A 27 -10,-1.6 -10,-1.6 -2,-0.6 -38,-0.0 -0.807 38.1 -74.9-125.3 166.5 2.0 -3.9 2.9 44 49 A P E + B 0 32A 38 0, 0.0 -12,-0.3 0, 0.0 2,-0.3 -0.093 54.6 164.6 -56.9 158.2 3.2 -0.2 2.9 45 50 A F E + B 0 31A 110 -14,-2.7 -14,-2.0 -13,-0.0 0, 0.0 -0.915 26.8 52.7-160.1-176.4 6.2 0.9 0.8 46 51 A D 0 0 94 -2,-0.3 -15,-0.1 -16,-0.2 -13,-0.0 0.279 360.0 360.0 59.6 164.7 8.1 3.8 -0.7 47 52 A G 0 0 99 -17,-0.1 -1,-0.1 -19,-0.0 -17,-0.1 0.471 360.0 360.0 70.2 360.0 9.3 6.8 1.4