==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=20-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA REPAIR 06-JUL-98 1XPA . COMPND 2 MOLECULE: XPA; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR T.IKEGAMI,I.KURAOKA,M.SAIJO,N.KODO,Y.KYOGOKU,K.MORIKAWA, . 113 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 8280.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 61 54.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 9 8.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 0.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 8 7.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 3 2.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 30 26.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 3 2.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 0 1 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 98 A M 0 0 236 0, 0.0 2,-0.3 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 -46.9 110.9 -15.9 -4.5 2 99 A E - 0 0 147 2,-0.0 2,-0.4 0, 0.0 14,-0.0 -0.943 360.0-154.9-135.7 158.5 111.9 -15.8 -0.8 3 100 A F + 0 0 80 -2,-0.3 3,-0.0 1,-0.1 14,-0.0 -0.962 27.3 150.5-137.9 120.8 112.1 -13.2 1.9 4 101 A D S S+ 0 0 117 -2,-0.4 12,-0.2 12,-0.1 -1,-0.1 0.114 75.3 47.8-134.6 21.7 114.3 -13.4 5.1 5 102 A Y + 0 0 164 11,-0.2 2,-1.0 10,-0.1 11,-0.2 0.035 62.1 144.2-152.1 33.4 115.0 -9.7 5.8 6 103 A V E -A 15 0A 10 9,-2.4 9,-1.2 -3,-0.0 2,-0.4 -0.650 33.6-162.8 -79.3 103.9 111.7 -7.9 5.6 7 104 A I E -A 14 0A 71 -2,-1.0 7,-0.2 7,-0.2 2,-0.1 -0.756 19.1-119.6 -92.8 132.9 112.1 -5.2 8.3 8 105 A C - 0 0 4 5,-1.6 20,-0.3 -2,-0.4 4,-0.3 -0.443 10.1-144.7 -68.1 137.6 109.0 -3.5 9.6 9 106 A E S S+ 0 0 158 18,-1.8 -1,-0.1 -2,-0.1 19,-0.1 0.229 98.3 43.5 -87.7 18.0 109.0 0.3 9.1 10 107 A E S S+ 0 0 125 17,-0.2 -1,-0.1 3,-0.1 18,-0.1 0.628 132.4 12.1-125.5 -50.9 107.2 0.6 12.4 11 108 A C S S- 0 0 53 2,-0.1 -2,-0.1 18,-0.0 17,-0.1 0.747 90.9-130.9-101.3 -29.7 108.8 -1.7 14.9 12 109 A G + 0 0 40 -4,-0.3 2,-0.4 1,-0.2 -3,-0.1 0.847 48.4 157.3 83.7 34.5 111.9 -2.6 12.9 13 110 A K - 0 0 135 -7,-0.0 -5,-1.6 1,-0.0 2,-0.4 -0.774 39.5-130.4 -95.3 135.5 111.6 -6.3 13.4 14 111 A E E +A 7 0A 144 -2,-0.4 2,-0.3 -7,-0.2 -7,-0.2 -0.676 46.8 135.8 -84.8 133.1 113.3 -8.6 10.8 15 112 A F E -A 6 0A 37 -9,-1.2 -9,-2.4 -2,-0.4 -10,-0.1 -0.909 60.0-105.7-158.3-175.1 111.0 -11.4 9.4 16 113 A M S S- 0 0 71 1,-0.3 2,-0.3 -2,-0.3 -11,-0.2 0.907 83.4 -44.6 -90.5 -50.5 110.0 -13.1 6.2 17 114 A D - 0 0 73 -13,-0.1 -1,-0.3 -11,-0.1 2,-0.2 -0.953 51.2-170.3-165.2-177.9 106.5 -11.7 5.6 18 115 A S - 0 0 15 -2,-0.3 4,-0.5 8,-0.2 11,-0.1 -0.673 55.8 -52.5-157.3-147.1 103.2 -10.8 7.4 19 116 A Y S > S+ 0 0 76 -2,-0.2 4,-0.7 2,-0.2 5,-0.3 0.894 136.9 32.4 -76.3 -38.6 99.7 -9.7 6.6 20 117 A L H >>S+ 0 0 0 8,-0.5 6,-1.9 1,-0.2 4,-1.4 0.851 121.9 47.7 -86.7 -35.9 100.8 -6.7 4.5 21 118 A M H 45S+ 0 0 19 7,-0.6 -2,-0.2 4,-0.3 -1,-0.2 0.606 101.8 70.1 -80.0 -7.5 103.9 -8.3 3.1 22 119 A N H 45S- 0 0 102 -4,-0.5 -1,-0.2 1,-0.1 -2,-0.2 0.940 130.8 -14.0 -74.9 -46.7 101.9 -11.5 2.3 23 120 A H H <5S+ 0 0 74 -4,-0.7 -2,-0.2 -3,-0.1 -3,-0.1 0.471 138.3 55.5-133.0 -11.3 99.9 -9.9 -0.6 24 121 A F T <5S- 0 0 11 -4,-1.4 -3,-0.2 -5,-0.3 42,-0.2 0.560 91.3-135.1-100.6 -9.1 100.4 -6.2 -0.3 25 122 A D < + 0 0 103 -5,-0.7 -4,-0.3 1,-0.2 -5,-0.1 0.749 51.0 155.3 63.8 18.4 104.2 -6.3 -0.5 26 123 A L - 0 0 35 -6,-1.9 2,-2.0 1,-0.1 -1,-0.2 -0.655 49.3-131.5 -82.7 134.6 104.2 -3.9 2.5 27 124 A P S S+ 0 0 41 0, 0.0 -18,-1.8 0, 0.0 2,-0.3 -0.415 72.8 101.2 -80.6 62.9 107.3 -3.9 4.7 28 125 A T - 0 0 10 -2,-2.0 -7,-0.6 -20,-0.3 -8,-0.5 -0.998 65.6-127.5-147.7 142.6 105.4 -4.0 8.0 29 126 A C > - 0 0 16 -2,-0.3 4,-1.5 -11,-0.1 3,-0.3 -0.251 30.3-109.4 -81.7 176.6 104.5 -6.9 10.4 30 127 A D T 4 S+ 0 0 81 1,-0.2 5,-0.2 2,-0.2 -1,-0.1 0.556 115.0 66.2 -83.6 -5.5 101.0 -7.7 11.6 31 128 A N T 4 S+ 0 0 127 1,-0.1 -1,-0.2 3,-0.1 -13,-0.0 0.767 109.4 34.9 -85.3 -25.7 102.0 -6.4 15.1 32 129 A C T 4 S+ 0 0 18 -3,-0.3 -2,-0.2 2,-0.0 -1,-0.1 0.799 96.9 92.5 -96.7 -34.2 102.3 -2.8 13.8 33 130 A R < - 0 0 67 -4,-1.5 2,-0.7 1,-0.1 3,-0.1 -0.357 64.0-152.3 -61.8 136.9 99.6 -2.8 11.2 34 131 A D > > + 0 0 91 1,-0.2 3,-2.1 -2,-0.0 6,-1.1 -0.717 17.8 176.8-112.1 81.7 96.3 -1.5 12.6 35 132 A A T 3 5S+ 0 0 28 -2,-0.7 -1,-0.2 4,-0.3 -2,-0.0 0.727 71.1 82.7 -58.3 -16.4 93.6 -3.1 10.5 36 133 A D T 3 5S- 0 0 136 -3,-0.1 -1,-0.3 4,-0.1 -2,-0.0 0.871 130.2 -41.1 -57.4 -32.5 91.1 -1.4 12.9 37 134 A D T < 5S+ 0 0 104 -3,-2.1 50,-0.1 0, 0.0 -2,-0.1 0.224 134.4 63.6-160.2 -56.7 91.5 1.7 10.7 38 135 A K T 5S+ 0 0 110 1,-0.3 49,-0.7 -4,-0.1 -3,-0.2 0.958 129.0 11.9 -46.3 -74.7 95.1 2.4 9.6 39 136 A H S -B 83 0B 33 -2,-0.3 4,-2.0 40,-0.2 5,-0.3 -0.647 24.3-132.1 -82.9 134.6 86.0 -1.6 -0.3 44 141 A K H >> S+ 0 0 35 38,-1.8 4,-1.3 -2,-0.4 3,-0.9 0.963 112.8 46.4 -49.1 -55.6 86.8 -0.5 -3.9 45 142 A T H 3> S+ 0 0 89 37,-0.3 4,-2.3 1,-0.3 5,-0.3 0.865 107.7 60.2 -56.8 -31.1 83.2 0.7 -4.3 46 143 A E H 3>>S+ 0 0 70 1,-0.2 4,-1.5 -3,-0.2 5,-0.5 0.878 102.9 49.7 -65.7 -34.6 83.7 2.4 -0.9 47 144 A A H >S+ 0 0 48 -2,-1.5 4,-1.2 4,-0.1 5,-0.5 0.448 104.3 14.1-128.0 -86.2 93.5 7.7 -10.8 57 154 A D T 45S+ 0 0 10 3,-0.2 35,-0.1 1,-0.2 -2,-0.1 0.075 128.9 53.8 -86.0 29.6 94.5 6.7 -7.2 58 155 A L T 45S- 0 0 1 -4,-0.2 -1,-0.2 34,-0.1 -3,-0.1 0.637 134.3 -9.8-125.2 -51.3 92.3 3.6 -7.5 59 156 A E T 45S+ 0 0 82 -5,-0.4 -2,-0.1 4,-0.0 -4,-0.1 0.208 137.6 49.5-135.4 11.5 93.4 1.6 -10.6 60 157 A K T <5S+ 0 0 103 -4,-1.2 -3,-0.2 -6,-0.2 -5,-0.1 0.394 72.1 101.2-129.7 -3.9 95.7 4.2 -12.3 61 158 A R S + 0 0 154 -2,-0.2 3,-0.8 1,-0.2 -5,-0.2 -0.494 58.0 159.0 -78.9 79.2 78.8 -9.3 -5.1 78 175 A W T 3 + 0 0 141 -2,-2.1 3,-0.3 1,-0.2 -1,-0.2 0.576 59.4 81.5 -78.5 -5.6 80.6 -11.0 -2.2 79 176 A G T 3 S- 0 0 40 1,-0.2 -1,-0.2 -3,-0.2 -2,-0.1 0.862 121.0 -6.5 -68.2 -32.4 81.4 -13.9 -4.6 80 177 A D S < S+ 0 0 108 -3,-0.8 -1,-0.2 2,-0.0 -2,-0.2 -0.179 86.9 155.3-158.6 55.8 84.4 -12.0 -6.0 81 178 A M - 0 0 21 -11,-0.9 -11,-0.4 -3,-0.3 2,-0.4 -0.265 31.0-137.2 -79.5 173.3 84.5 -8.5 -4.6 82 179 A K - 0 0 77 -13,-0.2 -38,-1.8 -15,-0.0 -37,-0.3 -0.994 14.0-165.6-136.3 139.6 87.8 -6.5 -4.4 83 180 A L E -BC 43 68B 22 -15,-0.9 -15,-1.4 -2,-0.4 2,-0.3 -0.470 7.8-146.7-111.0-174.2 89.3 -4.3 -1.7 84 181 A Y E -BC 42 67B 10 -42,-1.9 -42,-2.0 -17,-0.3 -17,-0.2 -0.986 39.9 -80.9-154.8 143.8 92.2 -1.8 -1.7 85 182 A L > - 0 0 2 -19,-1.9 4,-2.0 -2,-0.3 3,-0.5 -0.209 46.8-156.8 -46.2 105.9 94.8 -0.7 0.9 86 183 A K H > S+ 0 0 35 -47,-0.4 4,-2.1 1,-0.2 5,-0.2 0.967 87.0 54.5 -57.4 -57.2 92.6 1.7 2.8 87 184 A L H > S+ 0 0 27 -49,-0.7 4,-1.7 1,-0.2 -1,-0.2 0.827 110.0 52.0 -50.7 -27.1 95.3 4.0 4.2 88 185 A Q H > S+ 0 0 64 -3,-0.5 4,-2.4 2,-0.2 5,-0.3 0.969 110.5 42.7 -75.6 -52.6 96.5 4.4 0.6 89 186 A I H X S+ 0 0 0 -4,-2.0 4,-1.2 1,-0.2 -2,-0.2 0.732 112.0 61.1 -65.6 -16.3 93.2 5.5 -0.9 90 187 A V H X S+ 0 0 40 -4,-2.1 4,-1.8 -5,-0.3 -1,-0.2 0.964 109.3 36.3 -75.3 -52.4 92.7 7.6 2.2 91 188 A K H X S+ 0 0 143 -4,-1.7 4,-1.8 1,-0.2 5,-0.2 0.941 118.9 50.7 -66.5 -44.3 95.8 9.8 1.6 92 189 A R H X S+ 0 0 91 -4,-2.4 4,-1.2 1,-0.2 -1,-0.2 0.868 106.6 57.0 -62.2 -32.8 95.3 9.8 -2.1 93 190 A S H X>S+ 0 0 0 -4,-1.2 4,-2.3 -5,-0.3 5,-0.8 0.950 103.4 51.7 -64.6 -46.2 91.7 10.9 -1.6 94 191 A L H X5S+ 0 0 56 -4,-1.8 4,-1.2 1,-0.3 -1,-0.2 0.926 114.8 42.7 -57.7 -41.7 92.7 14.0 0.4 95 192 A E H <5S+ 0 0 123 -4,-1.8 -1,-0.3 2,-0.2 -2,-0.2 0.704 112.1 59.3 -77.5 -16.4 95.0 15.0 -2.5 96 193 A V H <5S+ 0 0 31 -4,-1.2 -2,-0.2 -3,-0.3 -3,-0.2 0.981 127.7 7.2 -75.8 -61.4 92.3 14.0 -5.0 97 194 A W H <5S- 0 0 94 -4,-2.3 -3,-0.2 2,-0.1 -2,-0.2 0.711 118.2 -90.2 -95.4 -21.9 89.4 16.3 -3.9 98 195 A G S < S- 0 0 31 1,-0.2 4,-1.4 -6,-0.2 -2,-0.1 -0.892 75.7 -53.9 179.4-147.9 91.1 16.7 2.1 100 197 A Q H > S+ 0 0 109 -2,-0.3 4,-2.1 2,-0.2 -1,-0.2 0.960 131.3 41.2 -83.2 -64.4 88.5 15.4 4.5 101 198 A E H > S+ 0 0 152 1,-0.2 4,-1.7 2,-0.2 3,-0.2 0.929 120.9 47.8 -49.2 -42.4 86.2 18.5 4.9 102 199 A A H > S+ 0 0 27 1,-0.2 4,-2.0 2,-0.2 -1,-0.2 0.962 103.8 59.0 -64.3 -47.9 86.6 18.9 1.1 103 200 A L H X S+ 0 0 6 -4,-1.4 4,-2.2 1,-0.2 -1,-0.2 0.869 103.8 55.6 -49.6 -33.0 85.9 15.3 0.5 104 201 A E H X S+ 0 0 106 -4,-2.1 4,-1.7 1,-0.2 -1,-0.2 0.983 103.7 49.7 -65.7 -54.2 82.6 16.0 2.1 105 202 A E H X S+ 0 0 137 -4,-1.7 4,-1.9 1,-0.2 -1,-0.2 0.837 109.4 57.7 -54.1 -26.9 81.7 18.8 -0.3 106 203 A A H X S+ 0 0 2 -4,-2.0 4,-1.7 2,-0.2 5,-0.3 0.978 97.9 55.3 -68.9 -53.9 82.6 16.3 -2.9 107 204 A K H X S+ 0 0 81 -4,-2.2 4,-1.4 1,-0.3 -1,-0.2 0.877 110.9 49.0 -47.3 -35.1 80.1 13.7 -1.8 108 205 A E H X S+ 0 0 100 -4,-1.7 4,-1.0 2,-0.2 -1,-0.3 0.916 102.1 59.7 -73.0 -40.7 77.5 16.5 -2.3 109 206 A V H X S+ 0 0 75 -4,-1.9 4,-0.5 1,-0.2 -1,-0.2 0.816 111.8 42.7 -57.4 -25.4 78.9 17.4 -5.8 110 207 A R H < S+ 0 0 150 -4,-1.7 -1,-0.2 2,-0.2 -2,-0.2 0.768 114.4 48.4 -91.3 -27.6 77.9 13.8 -6.7 111 208 A Q H < S+ 0 0 167 -4,-1.4 -2,-0.2 -5,-0.3 -1,-0.2 0.419 107.8 58.5 -91.1 4.3 74.6 13.9 -4.9 112 209 A E H < 0 0 152 -4,-1.0 -1,-0.2 1,-0.2 -2,-0.2 0.705 360.0 360.0-101.5 -26.9 73.7 17.2 -6.5 113 210 A N < 0 0 192 -4,-0.5 -1,-0.2 -5,-0.3 -4,-0.0 -0.678 360.0 360.0 -92.3 360.0 74.0 16.0 -10.1