==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=18-DEC-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RNA-BINDING PROTEIN 11-FEB-11 2Y90 . COMPND 2 MOLECULE: PROTEIN HFQ; . SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; . AUTHOR J.BASQUIN,C.SAUTER . 64 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4559.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 48 75.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 24 37.5 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 1 1.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 12 18.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 3 4.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 8 12.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 6 A S 0 0 115 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 154.3 -2.8 17.2 -13.1 2 7 A L > + 0 0 152 2,-0.1 4,-2.2 3,-0.1 5,-0.2 0.562 360.0 74.3-111.1 -19.9 -3.1 19.4 -10.0 3 8 A Q H > S+ 0 0 99 2,-0.2 4,-2.9 1,-0.2 5,-0.3 0.888 94.2 52.9 -60.2 -42.7 -0.1 18.0 -8.1 4 9 A D H > S+ 0 0 60 1,-0.2 4,-2.2 2,-0.2 -1,-0.2 0.950 111.3 43.7 -65.8 -51.5 2.4 19.8 -10.4 5 10 A P H > S+ 0 0 77 0, 0.0 4,-1.3 0, 0.0 -1,-0.2 0.915 117.2 48.3 -58.2 -39.3 0.8 23.2 -9.9 6 11 A F H X S+ 0 0 94 -4,-2.2 4,-1.2 1,-0.2 -2,-0.2 0.897 114.9 41.4 -70.4 -45.0 0.5 22.7 -6.1 7 12 A L H X S+ 0 0 4 -4,-2.9 4,-2.3 1,-0.2 5,-0.2 0.836 109.1 62.3 -73.3 -31.3 4.0 21.4 -5.4 8 13 A N H X S+ 0 0 56 -4,-2.2 4,-2.7 -5,-0.3 -1,-0.2 0.869 103.8 48.9 -57.4 -40.1 5.4 24.1 -7.8 9 14 A A H X S+ 0 0 14 -4,-1.3 4,-2.3 2,-0.2 6,-0.3 0.858 110.9 48.0 -71.6 -36.9 4.0 26.8 -5.6 10 15 A L H <>S+ 0 0 0 -4,-1.2 5,-1.8 2,-0.2 4,-0.2 0.900 117.4 43.8 -70.2 -37.6 5.4 25.3 -2.4 11 16 A R H <5S+ 0 0 105 -4,-2.3 3,-0.4 3,-0.2 -2,-0.2 0.897 115.6 47.8 -71.3 -41.9 8.8 24.9 -4.1 12 17 A R H <5S+ 0 0 179 -4,-2.7 -2,-0.2 1,-0.2 -3,-0.2 0.892 118.8 36.6 -70.4 -42.5 8.7 28.3 -5.7 13 18 A E T <5S- 0 0 116 -4,-2.3 -1,-0.2 -5,-0.2 -2,-0.2 0.374 105.7-126.5 -92.2 6.1 7.8 30.4 -2.6 14 19 A R T 5 - 0 0 173 -3,-0.4 -3,-0.2 -4,-0.2 -4,-0.1 0.900 41.0-175.8 49.3 46.7 9.9 28.1 -0.4 15 20 A V < - 0 0 0 -5,-1.8 16,-0.5 -6,-0.3 -1,-0.2 -0.666 27.9-118.9 -78.4 120.4 6.9 27.5 1.8 16 21 A P - 0 0 60 0, 0.0 44,-1.9 0, 0.0 2,-0.3 -0.394 41.7-171.7 -53.5 123.9 7.6 25.4 4.9 17 22 A V E -AB 29 59A 3 12,-2.9 12,-1.6 42,-0.2 2,-0.6 -0.860 27.1-137.8-125.7 155.2 5.4 22.2 4.7 18 23 A S E -AB 28 58A 13 40,-2.8 40,-2.8 -2,-0.3 2,-0.6 -0.969 19.1-166.3-106.8 116.4 4.4 19.3 6.9 19 24 A I E -AB 27 57A 0 8,-2.3 8,-3.3 -2,-0.6 2,-0.5 -0.931 6.8-157.7-100.0 124.6 4.4 16.0 4.9 20 25 A Y E -AB 26 56A 77 36,-2.0 35,-2.5 -2,-0.6 36,-1.2 -0.909 11.4-140.4-103.3 122.8 2.6 13.3 6.9 21 26 A L E > - B 0 54A 33 4,-3.1 3,-2.5 -2,-0.5 33,-0.2 -0.293 30.8 -96.9 -81.3 167.2 3.5 9.7 5.9 22 27 A V T 3 S+ 0 0 102 31,-2.0 32,-0.1 1,-0.3 -1,-0.1 0.564 124.4 54.6 -62.5 -5.5 1.1 6.8 5.6 23 28 A N T 3 S- 0 0 111 30,-0.3 -1,-0.3 2,-0.2 3,-0.1 0.152 121.7-102.7-111.1 16.8 2.2 5.7 9.1 24 29 A G S < S+ 0 0 51 -3,-2.5 -2,-0.1 1,-0.3 -3,-0.0 0.076 73.7 145.0 85.5 -23.7 1.4 9.1 10.8 25 30 A I - 0 0 91 -5,-0.1 -4,-3.1 1,-0.1 2,-0.5 -0.195 42.2-140.4 -54.0 137.8 5.0 10.1 10.9 26 31 A K E -A 20 0A 98 -6,-0.2 2,-0.3 -3,-0.1 -6,-0.2 -0.904 17.7-171.9-111.0 119.0 5.4 13.8 10.4 27 32 A L E -A 19 0A 30 -8,-3.3 -8,-2.3 -2,-0.5 2,-0.3 -0.815 6.1-164.9-106.2 149.0 8.2 15.4 8.3 28 33 A Q E +A 18 0A 120 -2,-0.3 2,-0.3 -10,-0.2 -10,-0.2 -0.970 33.4 72.6-135.1 147.7 8.9 19.1 8.1 29 34 A G E S-A 17 0A 12 -12,-1.6 -12,-2.9 -2,-0.3 2,-0.4 -0.996 72.8 -46.9 154.8-152.1 10.9 21.4 5.8 30 35 A Q E -C 42 0B 67 12,-1.7 12,-2.9 -2,-0.3 2,-0.6 -0.958 46.9-114.2-121.3 139.2 10.9 22.8 2.3 31 36 A I E -C 41 0B 5 -16,-0.5 10,-0.2 -2,-0.4 -17,-0.1 -0.536 29.8-178.4 -69.9 108.4 10.4 21.1 -1.0 32 37 A E E - 0 0 92 8,-2.3 2,-0.3 -2,-0.6 -1,-0.2 0.905 64.1 -32.1 -70.5 -45.8 13.7 21.3 -2.9 33 38 A S E -C 40 0B 47 7,-0.9 7,-2.5 2,-0.0 -1,-0.3 -0.968 58.7-154.6-164.8 166.2 12.4 19.6 -6.0 34 39 A F E -C 39 0B 43 -2,-0.3 2,-0.3 5,-0.2 5,-0.2 -0.996 10.4-177.7-151.9 157.9 9.9 16.9 -7.2 35 40 A D - 0 0 80 3,-2.1 -2,-0.0 -2,-0.3 5,-0.0 -0.806 54.9 -84.5-140.9 175.1 9.1 14.5 -10.0 36 41 A Q S S+ 0 0 157 -2,-0.3 15,-0.0 1,-0.2 3,-0.0 0.873 126.0 37.4 -60.3 -41.0 6.1 12.2 -10.3 37 42 A F S S+ 0 0 160 14,-0.1 14,-2.2 1,-0.1 15,-0.5 0.863 119.9 25.8 -70.5 -41.1 7.6 9.4 -8.1 38 43 A V E - D 0 50B 20 12,-0.2 -3,-2.1 13,-0.1 2,-0.4 -0.825 52.5-149.1-132.1 159.9 9.4 11.4 -5.3 39 44 A I E -CD 34 49B 2 10,-3.2 10,-2.7 -2,-0.3 2,-0.5 -0.994 17.1-144.9-127.5 128.0 9.7 14.6 -3.4 40 45 A L E -CD 33 48B 44 -7,-2.5 -8,-2.3 -2,-0.4 -7,-0.9 -0.802 18.1-165.7 -90.6 126.3 13.0 15.9 -2.1 41 46 A L E -CD 31 47B 2 6,-2.0 6,-2.3 -2,-0.5 2,-0.5 -0.933 6.9-145.0-115.5 135.1 12.5 17.7 1.3 42 47 A K E +CD 30 46B 87 -12,-2.9 -12,-1.7 -2,-0.4 4,-0.2 -0.887 41.7 120.8-111.7 125.8 15.2 19.9 2.8 43 48 A N S S- 0 0 115 2,-1.4 3,-0.1 -2,-0.5 -14,-0.1 -0.132 94.8 -23.1-128.2-117.5 16.3 20.5 6.4 44 49 A T S S+ 0 0 126 1,-0.1 2,-0.3 -2,-0.1 -2,-0.1 0.911 140.9 10.0 -62.5 -40.3 19.8 19.7 7.6 45 50 A V S S- 0 0 98 -4,-0.1 -2,-1.4 0, 0.0 2,-0.6 -0.907 88.8 -99.2-133.4 160.6 20.1 17.4 4.6 46 51 A S E -D 42 0B 47 -2,-0.3 2,-0.3 -4,-0.2 -4,-0.2 -0.737 41.7-168.8 -81.3 122.2 18.1 16.6 1.5 47 52 A Q E -D 41 0B 84 -6,-2.3 -6,-2.0 -2,-0.6 2,-0.7 -0.847 20.6-123.7-110.5 149.5 16.0 13.4 2.0 48 53 A M E -D 40 0B 101 -2,-0.3 2,-0.5 -8,-0.2 -8,-0.2 -0.824 24.4-166.1 -97.1 117.0 14.1 11.5 -0.6 49 54 A V E -D 39 0B 9 -10,-2.7 -10,-3.2 -2,-0.7 2,-0.6 -0.891 14.4-139.0-103.6 121.1 10.4 11.1 0.1 50 55 A Y E > -D 38 0B 111 -2,-0.5 3,-2.4 -12,-0.2 -12,-0.2 -0.697 7.2-144.8 -79.4 119.4 8.5 8.6 -2.0 51 56 A K G > S+ 0 0 28 -14,-2.2 3,-2.0 -2,-0.6 -1,-0.1 0.804 97.5 66.2 -52.5 -32.6 5.0 9.9 -2.9 52 57 A H G 3 S+ 0 0 149 -15,-0.5 -1,-0.3 1,-0.3 -14,-0.1 0.712 103.4 47.2 -67.1 -16.9 3.5 6.5 -2.6 53 58 A A G < S+ 0 0 27 -3,-2.4 -31,-2.0 -32,-0.1 2,-0.4 0.280 93.5 98.9-105.1 7.9 4.3 6.7 1.1 54 59 A I E < -B 21 0A 27 -3,-2.0 -33,-0.2 -33,-0.2 3,-0.1 -0.831 44.0-179.7 -95.2 134.3 2.9 10.2 1.4 55 60 A S E - 0 0 74 -35,-2.5 2,-0.3 -2,-0.4 -34,-0.2 0.854 67.9 -9.7 -94.6 -46.2 -0.7 10.7 2.8 56 61 A T E -B 20 0A 68 -36,-1.2 -36,-2.0 2,-0.0 2,-0.5 -0.996 52.3-136.9-154.8 154.9 -1.0 14.5 2.6 57 62 A V E -B 19 0A 29 -2,-0.3 -38,-0.2 -38,-0.2 -3,-0.0 -0.962 23.3-167.7-118.0 116.4 1.0 17.6 2.0 58 63 A V E -B 18 0A 57 -40,-2.8 -40,-2.8 -2,-0.5 -2,-0.0 -0.867 10.0-148.9-115.6 102.0 0.3 20.4 4.4 59 64 A P E -B 17 0A 41 0, 0.0 -42,-0.2 0, 0.0 4,-0.1 -0.308 14.2-137.1 -60.2 152.2 1.5 24.0 3.8 60 65 A S S S+ 0 0 80 -44,-1.9 -43,-0.1 1,-0.2 -2,-0.0 0.339 85.3 20.0 -96.9 5.9 2.3 26.0 6.9 61 66 A R S S- 0 0 115 -45,-0.1 -1,-0.2 -46,-0.0 -46,-0.0 -0.940 102.6 -72.7-166.0 153.7 0.7 29.2 5.6 62 67 A P - 0 0 118 0, 0.0 2,-0.4 0, 0.0 -2,-0.1 -0.188 48.6-157.0 -53.8 137.5 -1.9 30.0 2.8 63 68 A V 0 0 47 -4,-0.1 -53,-0.1 -48,-0.0 -54,-0.1 -0.980 360.0 360.0-128.4 126.0 -0.4 29.7 -0.6 64 69 A S 0 0 157 -2,-0.4 0, 0.0 -55,-0.1 0, 0.0 -0.523 360.0 360.0 -71.0 360.0 -1.6 31.4 -3.8