==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=20-JUL-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA BINDING PROTEIN 23-DEC-04 1YD0 . COMPND 2 MOLECULE: UVRABC SYSTEM PROTEIN C; . SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; . AUTHOR J.J.TRUGLIO,B.RHAU,D.L.CROTEAU,L.WANG,M.SKORVAGA,E.KARAKAS, . 89 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5809.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 59 66.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 16 18.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 7 7.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 31 34.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 1 0 0 2 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 45 0, 0.0 55,-0.2 0, 0.0 58,-0.1 0.000 360.0 360.0 360.0 138.2 37.8 27.9 55.2 2 2 A K >> - 0 0 107 56,-0.4 4,-2.1 53,-0.4 3,-0.6 -0.260 360.0-125.5 -56.5 140.6 35.1 25.2 55.5 3 3 A E H 3> S+ 0 0 141 1,-0.2 4,-2.5 2,-0.2 5,-0.2 0.865 109.3 56.9 -59.5 -36.5 36.2 22.2 57.5 4 4 A K H 3> S+ 0 0 122 1,-0.2 4,-2.4 2,-0.2 -1,-0.2 0.855 106.8 49.3 -65.0 -31.5 35.3 19.8 54.7 5 5 A I H <> S+ 0 0 2 -3,-0.6 4,-2.6 2,-0.2 -1,-0.2 0.906 109.5 50.5 -73.1 -42.5 37.6 21.7 52.4 6 6 A R H X S+ 0 0 91 -4,-2.1 4,-2.4 2,-0.2 -2,-0.2 0.929 112.1 48.8 -57.7 -44.7 40.5 21.6 54.9 7 7 A K H X S+ 0 0 131 -4,-2.5 4,-1.8 2,-0.2 -2,-0.2 0.942 110.6 49.8 -58.9 -46.4 39.9 17.8 55.3 8 8 A K H X S+ 0 0 92 -4,-2.4 4,-0.8 1,-0.2 -1,-0.2 0.900 111.4 50.1 -60.0 -43.0 39.9 17.3 51.5 9 9 A I H >< S+ 0 0 0 -4,-2.6 3,-0.9 1,-0.2 -1,-0.2 0.937 110.4 48.7 -59.4 -46.0 43.1 19.3 51.2 10 10 A L H 3< S+ 0 0 70 -4,-2.4 -1,-0.2 1,-0.3 -2,-0.2 0.763 113.6 47.6 -70.7 -22.5 44.8 17.2 53.9 11 11 A L H 3< S+ 0 0 121 -4,-1.8 -1,-0.3 -5,-0.2 -2,-0.2 0.521 82.8 122.7 -90.2 -9.8 43.7 14.0 52.3 12 12 A A << - 0 0 13 -3,-0.9 2,-0.1 -4,-0.8 -3,-0.0 -0.221 62.4-116.5 -60.4 141.5 44.8 14.9 48.8 13 13 A P - 0 0 53 0, 0.0 2,-2.0 0, 0.0 24,-1.8 -0.329 17.9-109.9 -78.5 164.3 47.3 12.5 47.2 14 14 A E S S+ 0 0 118 22,-0.2 21,-0.1 21,-0.2 -2,-0.0 -0.479 84.4 111.6 -85.8 65.5 50.9 13.1 46.1 15 15 A E S S- 0 0 97 -2,-2.0 21,-2.8 53,-0.0 22,-0.1 -0.951 76.3 -94.4-140.9 151.9 49.8 12.8 42.5 16 16 A P + 0 0 17 0, 0.0 50,-2.2 0, 0.0 2,-0.3 -0.369 62.0 132.0 -67.4 151.5 49.4 15.2 39.5 17 17 A G E -AB 33 65A 0 16,-2.1 16,-2.3 48,-0.3 2,-0.4 -0.992 51.7-103.1-179.1 177.2 46.0 16.7 39.1 18 18 A V E -AB 32 64A 0 46,-2.3 46,-2.8 -2,-0.3 2,-0.4 -0.945 31.0-158.0-121.7 141.8 43.8 19.7 38.5 19 19 A Y E -AB 31 63A 6 12,-2.7 12,-2.3 -2,-0.4 2,-0.4 -0.947 5.2-162.9-125.6 150.4 41.8 21.3 41.3 20 20 A I E -AB 30 62A 7 42,-2.9 42,-2.8 -2,-0.4 2,-0.4 -0.954 5.8-158.2-135.3 110.8 38.6 23.4 41.2 21 21 A F E -AB 29 61A 0 8,-2.6 7,-3.1 -2,-0.4 8,-1.6 -0.766 25.9-173.4 -83.2 137.0 37.4 25.6 44.1 22 22 A K E -AB 27 60A 37 38,-2.8 37,-2.6 -2,-0.4 38,-1.5 -0.880 22.7-161.2-130.6 155.6 33.7 26.3 43.7 23 23 A N E > S-A 26 0A 36 3,-2.3 3,-1.9 -2,-0.3 35,-0.1 -0.962 82.6 -12.7-138.0 128.0 30.9 28.3 45.2 24 24 A K T 3 S- 0 0 175 -2,-0.4 -1,-0.1 1,-0.3 34,-0.0 0.885 131.2 -52.4 49.8 42.1 27.3 27.5 44.7 25 25 A G T 3 S+ 0 0 48 1,-0.2 -1,-0.3 0, 0.0 -3,-0.0 0.415 116.0 112.9 81.9 -0.1 28.2 25.1 42.0 26 26 A V E < S-A 23 0A 88 -3,-1.9 -3,-2.3 59,-0.0 -1,-0.2 -0.893 70.5-118.8-110.0 125.3 30.3 27.7 40.0 27 27 A P E +A 22 0A 13 0, 0.0 59,-0.6 0, 0.0 -5,-0.3 -0.458 30.7 175.6 -59.2 132.4 34.1 27.3 39.7 28 28 A I E + 0 0 7 -7,-3.1 59,-2.5 1,-0.4 2,-0.3 0.587 69.7 12.1-112.1 -17.2 35.9 30.3 41.2 29 29 A Y E -A 21 0A 42 -8,-1.6 -8,-2.6 57,-0.1 2,-0.4 -0.912 59.6-168.8-159.3 134.3 39.5 29.1 40.8 30 30 A I E +A 20 0A 0 -2,-0.3 2,-0.3 -10,-0.2 -10,-0.2 -0.984 19.7 158.3-121.2 133.4 41.1 26.3 38.8 31 31 A G E -A 19 0A 0 -12,-2.3 -12,-2.7 -2,-0.4 2,-0.3 -0.874 26.6-132.5-140.8 174.6 44.7 25.3 39.2 32 32 A K E -A 18 0A 73 -2,-0.3 2,-0.3 -14,-0.2 -14,-0.2 -0.842 14.9-161.8-128.1 168.1 47.0 22.3 38.6 33 33 A A E -A 17 0A 7 -16,-2.3 -16,-2.1 -2,-0.3 3,-0.3 -0.996 29.8-148.6-149.1 143.0 49.6 20.5 40.6 34 34 A K S S+ 0 0 131 1,-0.3 2,-0.4 -2,-0.3 -1,-0.1 0.840 111.2 17.5 -70.6 -37.5 52.6 18.2 40.2 35 35 A R S > S- 0 0 115 1,-0.1 4,-2.3 -19,-0.1 -1,-0.3 -0.938 74.2-155.2-134.2 111.3 51.5 16.9 43.6 36 36 A L H > S+ 0 0 0 -21,-2.8 4,-2.8 -2,-0.4 5,-0.3 0.878 94.6 56.7 -51.7 -43.4 48.0 17.8 44.7 37 37 A S H > S+ 0 0 6 -24,-1.8 4,-2.2 2,-0.2 -1,-0.2 0.940 109.3 43.9 -54.7 -51.0 48.9 17.4 48.3 38 38 A N H > S+ 0 0 95 -3,-0.2 4,-1.1 1,-0.2 -2,-0.2 0.943 117.8 43.3 -64.1 -47.6 51.8 19.9 48.1 39 39 A R H < S+ 0 0 134 -4,-2.3 3,-0.5 1,-0.2 4,-0.4 0.931 115.9 46.2 -68.7 -44.1 49.9 22.5 46.1 40 40 A L H >< S+ 0 0 0 -4,-2.8 3,-1.7 -5,-0.3 4,-0.3 0.887 105.2 60.1 -67.4 -35.5 46.6 22.3 48.0 41 41 A R H >< S+ 0 0 112 -4,-2.2 3,-1.9 -5,-0.3 4,-0.5 0.812 92.0 69.5 -62.9 -26.8 48.3 22.4 51.4 42 42 A S G >< S+ 0 0 50 -4,-1.1 3,-0.8 -3,-0.5 -1,-0.3 0.762 88.1 65.4 -61.1 -24.7 49.7 25.8 50.4 43 43 A Y G < S+ 0 0 16 -3,-1.7 -1,-0.3 -4,-0.4 -2,-0.2 0.690 89.2 66.8 -71.3 -17.9 46.1 27.2 50.7 44 44 A L G < S+ 0 0 27 -3,-1.9 -1,-0.2 -4,-0.3 -2,-0.2 0.781 109.1 35.9 -73.1 -25.8 46.2 26.5 54.4 45 45 A N S < S- 0 0 121 -3,-0.8 -1,-0.3 -4,-0.5 2,-0.2 -0.806 95.0-144.6-126.0 83.7 48.9 29.2 55.0 46 46 A P - 0 0 58 0, 0.0 -3,-0.1 0, 0.0 -4,-0.0 -0.327 19.9-173.6 -65.2 122.5 47.9 31.8 52.5 47 47 A Q S S+ 0 0 172 -5,-0.3 2,-0.3 -2,-0.2 -4,-0.1 0.622 73.2 29.8 -85.0 -16.6 50.9 33.6 51.0 48 48 A T S > S- 0 0 68 1,-0.1 4,-2.1 0, 0.0 5,-0.1 -0.956 80.6-115.2-138.7 160.5 48.7 36.1 49.1 49 49 A E H > S+ 0 0 135 -2,-0.3 4,-2.9 1,-0.2 5,-0.2 0.861 116.3 57.3 -61.7 -37.3 45.3 37.8 49.6 50 50 A K H > S+ 0 0 68 2,-0.2 4,-2.8 1,-0.2 5,-0.2 0.933 106.0 48.5 -61.0 -46.2 44.0 36.1 46.5 51 51 A V H > S+ 0 0 28 1,-0.2 4,-1.9 2,-0.2 -1,-0.2 0.911 111.7 51.1 -60.4 -40.8 44.9 32.6 48.0 52 52 A F H X S+ 0 0 110 -4,-2.1 4,-1.5 1,-0.2 -2,-0.2 0.965 111.5 47.3 -58.7 -50.7 43.1 33.7 51.2 53 53 A R H X S+ 0 0 131 -4,-2.9 4,-2.8 1,-0.2 5,-0.3 0.903 109.4 52.0 -57.6 -48.5 40.0 34.8 49.3 54 54 A I H X S+ 0 0 2 -4,-2.8 4,-1.7 1,-0.2 -1,-0.2 0.931 111.9 47.0 -54.6 -46.4 39.7 31.6 47.2 55 55 A G H < S+ 0 0 3 -4,-1.9 -53,-0.4 -5,-0.2 -1,-0.2 0.735 116.6 43.7 -72.5 -23.5 39.9 29.5 50.3 56 56 A E H < S+ 0 0 100 -4,-1.5 -1,-0.2 -3,-0.3 -2,-0.2 0.818 114.4 46.5 -87.0 -36.9 37.3 31.5 52.2 57 57 A E H < S+ 0 0 59 -4,-2.8 -2,-0.2 -5,-0.2 -3,-0.2 0.809 91.8 97.3 -76.2 -29.9 34.8 32.0 49.4 58 58 A A < - 0 0 2 -4,-1.7 -56,-0.4 -5,-0.3 -35,-0.3 -0.287 43.5-178.5 -61.1 142.1 34.7 28.4 48.3 59 59 A D S S+ 0 0 33 -37,-2.6 2,-0.3 1,-0.3 -36,-0.2 0.369 74.8 28.1-111.2 3.2 32.0 26.1 49.5 60 60 A E E -B 22 0A 74 -38,-1.5 -38,-2.8 2,-0.0 2,-0.4 -0.985 59.3-157.0-158.6 146.2 33.4 23.1 47.7 61 61 A L E -B 21 0A 14 -2,-0.3 2,-0.4 -40,-0.2 -40,-0.2 -0.995 12.5-169.6-128.1 122.8 36.7 21.7 46.4 62 62 A E E -B 20 0A 72 -42,-2.8 -42,-2.9 -2,-0.4 2,-0.4 -0.902 4.1-165.2-105.7 141.5 36.9 19.2 43.5 63 63 A T E -B 19 0A 31 -2,-0.4 2,-0.5 -44,-0.2 -44,-0.2 -0.965 7.3-161.6-124.7 148.7 40.0 17.4 42.6 64 64 A I E -B 18 0A 48 -46,-2.8 -46,-2.3 -2,-0.4 2,-0.3 -0.970 12.1-148.3-128.6 111.9 40.8 15.5 39.4 65 65 A V E -B 17 0A 85 -2,-0.5 -48,-0.3 -48,-0.2 2,-0.2 -0.657 23.3-163.6 -79.6 132.6 43.7 13.1 39.5 66 66 A V - 0 0 11 -50,-2.2 3,-0.1 -2,-0.3 6,-0.0 -0.688 30.3-109.1-116.7 174.6 45.4 12.8 36.1 67 67 A M S S- 0 0 150 -2,-0.2 2,-0.3 1,-0.2 -1,-0.1 0.886 87.4 -31.0 -71.1 -37.3 47.8 10.5 34.4 68 68 A N S > S- 0 0 72 -53,-0.1 4,-1.9 1,-0.0 3,-0.2 -0.940 72.6 -76.4-168.5 178.8 50.8 12.8 34.3 69 69 A E H > S+ 0 0 105 -2,-0.3 4,-2.2 1,-0.2 5,-0.1 0.792 122.6 59.3 -67.9 -28.8 51.9 16.5 34.2 70 70 A R H > S+ 0 0 207 2,-0.2 4,-1.9 1,-0.2 -1,-0.2 0.926 107.8 45.5 -63.8 -44.7 51.3 16.7 30.5 71 71 A E H > S+ 0 0 63 1,-0.2 4,-2.9 -3,-0.2 5,-0.3 0.897 110.3 54.8 -65.5 -38.2 47.6 15.9 31.1 72 72 A A H X S+ 0 0 2 -4,-1.9 4,-2.5 1,-0.2 5,-0.3 0.912 107.0 52.2 -58.7 -42.3 47.5 18.3 34.0 73 73 A F H X S+ 0 0 134 -4,-2.2 4,-1.9 1,-0.2 -1,-0.2 0.945 116.2 36.4 -60.4 -52.0 48.7 21.1 31.7 74 74 A I H X S+ 0 0 85 -4,-1.9 4,-2.6 2,-0.2 5,-0.2 0.887 116.8 51.5 -73.6 -39.5 46.1 20.7 29.0 75 75 A L H X S+ 0 0 38 -4,-2.9 4,-2.7 -5,-0.2 5,-0.2 0.939 110.9 48.8 -64.0 -43.0 43.2 19.8 31.3 76 76 A E H X S+ 0 0 36 -4,-2.5 4,-2.5 -5,-0.3 5,-0.2 0.943 112.6 48.2 -61.0 -44.6 43.8 22.9 33.4 77 77 A A H X S+ 0 0 26 -4,-1.9 4,-2.2 -5,-0.3 -1,-0.2 0.909 112.4 48.9 -61.0 -43.6 44.0 25.1 30.3 78 78 A N H X S+ 0 0 82 -4,-2.6 4,-2.1 1,-0.2 -1,-0.2 0.913 112.2 47.3 -63.7 -41.4 40.8 23.6 28.9 79 79 A L H X S+ 0 0 24 -4,-2.7 4,-2.6 2,-0.2 5,-0.3 0.885 110.6 51.2 -72.2 -35.1 38.9 24.0 32.1 80 80 A I H X S+ 0 0 24 -4,-2.5 4,-2.5 -5,-0.2 -1,-0.2 0.920 112.1 48.3 -63.5 -42.3 40.0 27.6 32.6 81 81 A K H < S+ 0 0 120 -4,-2.2 -2,-0.2 -5,-0.2 -1,-0.2 0.891 114.9 46.0 -63.7 -38.1 38.9 28.4 29.0 82 82 A K H < S+ 0 0 144 -4,-2.1 -2,-0.2 -5,-0.2 -1,-0.2 0.906 127.4 23.3 -70.0 -43.7 35.6 26.7 29.6 83 83 A Y H < S- 0 0 105 -4,-2.6 -2,-0.2 -5,-0.1 -3,-0.2 0.638 78.3-154.2-104.8 -19.0 34.7 28.2 32.9 84 84 A R < - 0 0 165 -4,-2.5 -4,-0.1 -5,-0.3 -3,-0.1 0.913 27.0-147.5 40.6 62.6 36.7 31.5 33.1 85 85 A P > - 0 0 5 0, 0.0 3,-1.8 0, 0.0 -57,-0.2 -0.238 15.5-113.9 -67.0 151.4 36.7 31.4 36.9 86 86 A K T 3 S+ 0 0 129 -59,-0.6 -57,-0.1 1,-0.3 -58,-0.1 0.767 112.6 44.1 -56.1 -34.5 36.6 34.7 38.8 87 87 A Y T 3 S+ 0 0 36 -59,-2.5 2,-0.4 2,-0.1 -1,-0.3 0.460 91.6 96.2 -93.7 -0.3 40.1 34.3 40.4 88 88 A N < 0 0 27 -3,-1.8 -57,-0.0 -60,-0.2 -59,-0.0 -0.737 360.0 360.0 -86.9 138.4 41.9 33.1 37.2 89 89 A V 0 0 160 -2,-0.4 -1,-0.1 0, 0.0 -2,-0.1 -0.181 360.0 360.0 -78.7 360.0 43.6 35.8 35.3