==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=20-JUL-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA BINDING PROTEIN 23-DEC-04 1YD2 . COMPND 2 MOLECULE: UVRABC SYSTEM PROTEIN C; . SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; . AUTHOR J.J.TRUGLIO,B.RHAU,D.L.CROTEAU,L.WANG,M.SKORVAGA,E.KARAKAS, . 90 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6040.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 59 65.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 16 17.8 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 7 7.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 31 34.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 1 0 0 2 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 55 0, 0.0 55,-0.1 0, 0.0 58,-0.1 0.000 360.0 360.0 360.0 138.3 38.3 28.2 56.5 2 2 A K >> - 0 0 115 53,-0.4 4,-1.9 56,-0.4 3,-0.6 -0.274 360.0-125.8 -56.7 140.5 35.5 25.5 56.7 3 3 A E H 3> S+ 0 0 134 1,-0.2 4,-2.2 2,-0.2 5,-0.2 0.866 108.8 56.5 -59.4 -38.5 36.6 22.4 58.7 4 4 A K H 3> S+ 0 0 124 1,-0.2 4,-2.0 2,-0.2 -1,-0.2 0.830 107.0 50.0 -64.5 -32.1 35.7 20.0 55.9 5 5 A I H <> S+ 0 0 2 -3,-0.6 4,-2.4 2,-0.2 -1,-0.2 0.904 108.7 50.8 -72.4 -43.7 38.1 21.9 53.6 6 6 A R H X S+ 0 0 97 -4,-1.9 4,-2.1 2,-0.2 -2,-0.2 0.929 111.5 49.8 -56.2 -45.0 41.0 21.8 56.1 7 7 A K H X S+ 0 0 132 -4,-2.2 4,-1.5 1,-0.2 -2,-0.2 0.935 110.1 49.3 -60.2 -47.7 40.4 18.0 56.5 8 8 A K H X S+ 0 0 98 -4,-2.0 4,-0.8 1,-0.2 -1,-0.2 0.892 109.6 52.5 -60.2 -41.9 40.5 17.5 52.7 9 9 A I H >< S+ 0 0 0 -4,-2.4 3,-0.8 1,-0.2 -1,-0.2 0.934 108.9 49.3 -57.1 -45.2 43.7 19.5 52.4 10 10 A L H 3< S+ 0 0 72 -4,-2.1 -1,-0.2 1,-0.2 -2,-0.2 0.757 112.3 48.8 -71.5 -23.0 45.5 17.4 55.1 11 11 A L H 3< S+ 0 0 129 -4,-1.5 -1,-0.2 -5,-0.2 -2,-0.2 0.536 82.2 122.3 -88.4 -10.4 44.4 14.1 53.4 12 12 A A << - 0 0 14 -3,-0.8 2,-0.0 -4,-0.8 -3,-0.0 -0.230 62.0-116.9 -59.5 140.6 45.5 15.1 49.8 13 13 A P - 0 0 54 0, 0.0 24,-1.8 0, 0.0 2,-1.7 -0.308 17.3-109.3 -79.2 163.0 48.1 12.7 48.3 14 14 A E S S+ 0 0 118 22,-0.2 21,-0.1 21,-0.2 -2,-0.0 -0.466 84.6 109.1 -82.2 63.4 51.7 13.2 47.2 15 15 A E S S- 0 0 99 -2,-1.7 21,-2.6 53,-0.0 22,-0.1 -0.943 76.7 -92.3-141.9 152.6 50.6 13.0 43.5 16 16 A P + 0 0 18 0, 0.0 50,-1.9 0, 0.0 2,-0.3 -0.350 62.2 128.1 -66.9 149.0 50.2 15.3 40.5 17 17 A G E -AB 33 65A 0 16,-1.9 16,-2.2 48,-0.2 2,-0.3 -0.992 52.1-100.3-178.3-179.7 46.8 16.9 40.0 18 18 A V E -AB 32 64A 0 46,-2.1 46,-2.6 -2,-0.3 2,-0.3 -0.931 30.4-157.4-122.9 141.4 44.4 19.9 39.5 19 19 A F E -AB 31 63A 0 12,-2.4 12,-2.1 -2,-0.3 2,-0.4 -0.950 5.0-163.5-125.2 147.9 42.3 21.5 42.2 20 20 A I E -AB 30 62A 9 42,-2.7 42,-2.6 -2,-0.3 2,-0.4 -0.953 5.5-158.7-134.2 109.5 39.1 23.7 42.1 21 21 A F E -AB 29 61A 0 8,-2.4 7,-3.0 -2,-0.4 8,-1.5 -0.780 25.2-174.2 -81.5 136.8 37.9 25.9 45.0 22 22 A K E -AB 27 60A 41 38,-2.4 37,-2.4 -2,-0.4 38,-1.4 -0.872 23.1-161.3-131.0 155.4 34.1 26.5 44.6 23 23 A N E > S-A 26 0A 37 3,-2.1 3,-1.9 -2,-0.3 35,-0.1 -0.966 83.1 -12.5-137.5 126.6 31.2 28.6 46.3 24 24 A K T 3 S- 0 0 181 -2,-0.3 34,-0.0 1,-0.3 -1,-0.0 0.878 131.0 -52.8 51.4 42.8 27.5 27.7 45.7 25 25 A G T 3 S+ 0 0 48 1,-0.2 -1,-0.3 0, 0.0 -3,-0.0 0.398 115.0 113.8 78.3 -0.1 28.6 25.4 42.9 26 26 A V E < S-A 23 0A 89 -3,-1.9 -3,-2.1 59,-0.0 -1,-0.2 -0.884 70.1-118.9-107.0 124.1 30.6 27.9 41.0 27 27 A P E +A 22 0A 15 0, 0.0 59,-0.5 0, 0.0 -5,-0.3 -0.439 31.4 174.4 -57.0 131.4 34.4 27.6 40.6 28 28 A I E + 0 0 8 -7,-3.0 59,-2.3 1,-0.3 2,-0.3 0.597 69.0 13.0-111.6 -20.3 36.3 30.7 42.2 29 29 A Y E -A 21 0A 41 -8,-1.5 -8,-2.4 57,-0.1 2,-0.4 -0.911 59.5-169.6-156.2 133.9 40.0 29.5 41.7 30 30 A I E +A 20 0A 0 -2,-0.3 2,-0.3 -10,-0.2 -10,-0.2 -0.982 19.6 156.4-122.9 131.7 41.6 26.7 39.6 31 31 A G E -A 19 0A 0 -12,-2.1 -12,-2.4 -2,-0.4 2,-0.3 -0.876 27.1-131.5-140.5 175.2 45.3 25.6 40.0 32 32 A K E -A 18 0A 58 -2,-0.3 2,-0.3 -14,-0.2 -14,-0.2 -0.863 14.9-162.5-129.0 165.7 47.7 22.6 39.5 33 33 A A E -A 17 0A 6 -16,-2.2 -16,-1.9 -2,-0.3 3,-0.3 -0.999 30.2-148.1-147.0 144.0 50.4 20.8 41.5 34 34 A K S S+ 0 0 132 1,-0.3 2,-0.4 -2,-0.3 -1,-0.1 0.839 111.5 17.5 -69.8 -39.9 53.4 18.5 41.1 35 35 A R S > S- 0 0 119 1,-0.1 4,-1.9 -19,-0.1 3,-0.4 -0.942 73.9-155.2-131.5 110.7 52.3 17.2 44.6 36 36 A L H > S+ 0 0 0 -21,-2.6 4,-2.5 -2,-0.4 5,-0.3 0.878 94.5 58.4 -51.3 -42.5 48.7 18.1 45.7 37 37 A S H > S+ 0 0 8 -24,-1.8 4,-2.0 1,-0.2 -1,-0.2 0.916 107.8 44.1 -53.3 -49.2 49.7 17.7 49.3 38 38 A N H > S+ 0 0 102 -3,-0.4 4,-1.1 2,-0.2 -2,-0.2 0.943 117.0 43.6 -67.2 -47.5 52.5 20.4 49.1 39 39 A R H < S+ 0 0 103 -4,-1.9 4,-0.4 1,-0.2 3,-0.3 0.924 116.4 45.9 -67.1 -43.6 50.5 23.0 47.2 40 40 A L H >< S+ 0 0 0 -4,-2.5 3,-1.7 -5,-0.3 4,-0.3 0.892 105.3 59.5 -70.5 -35.1 47.3 22.6 49.1 41 41 A R H >< S+ 0 0 117 -4,-2.0 3,-1.8 -5,-0.3 4,-0.5 0.816 92.2 70.5 -63.7 -26.1 49.0 22.7 52.6 42 42 A S G >< S+ 0 0 57 -4,-1.1 3,-0.8 -3,-0.3 -1,-0.3 0.770 86.7 67.0 -59.4 -24.4 50.4 26.2 51.6 43 43 A Y G < S+ 0 0 18 -3,-1.7 -1,-0.3 -4,-0.4 -2,-0.2 0.680 87.9 66.7 -68.9 -20.2 46.7 27.5 51.9 44 44 A L G < S+ 0 0 32 -3,-1.8 -1,-0.2 -4,-0.3 -2,-0.2 0.766 110.0 34.2 -74.5 -26.1 46.8 26.8 55.7 45 45 A N S < S- 0 0 126 -3,-0.8 -1,-0.3 -4,-0.5 2,-0.2 -0.809 94.9-144.0-126.3 83.1 49.5 29.6 56.3 46 46 A P - 0 0 61 0, 0.0 -3,-0.1 0, 0.0 -4,-0.0 -0.336 20.6-174.1 -65.6 122.9 48.6 32.2 53.7 47 47 A Q S S+ 0 0 175 -5,-0.2 2,-0.3 -2,-0.2 -4,-0.1 0.607 73.5 32.5 -83.5 -15.9 51.6 34.0 52.1 48 48 A T S > S- 0 0 75 1,-0.1 4,-2.0 0, 0.0 5,-0.1 -0.952 79.4-117.5-139.1 157.1 49.3 36.5 50.2 49 49 A E H > S+ 0 0 129 -2,-0.3 4,-2.6 2,-0.2 5,-0.2 0.854 115.1 57.6 -61.1 -35.9 45.9 38.3 50.6 50 50 A K H > S+ 0 0 77 2,-0.2 4,-2.5 1,-0.2 5,-0.2 0.939 106.0 48.2 -61.9 -46.7 44.6 36.4 47.5 51 51 A V H > S+ 0 0 29 1,-0.2 4,-1.9 2,-0.2 -1,-0.2 0.908 111.4 51.4 -60.8 -42.3 45.4 33.0 49.1 52 52 A F H X S+ 0 0 103 -4,-2.0 4,-1.4 1,-0.2 -2,-0.2 0.965 111.5 47.1 -56.6 -51.8 43.6 34.2 52.3 53 53 A R H X S+ 0 0 128 -4,-2.6 4,-2.6 1,-0.2 3,-0.4 0.911 109.5 52.1 -57.0 -49.2 40.5 35.3 50.4 54 54 A I H X S+ 0 0 1 -4,-2.5 4,-1.8 1,-0.2 -1,-0.2 0.941 111.2 47.7 -55.4 -46.7 40.2 32.0 48.3 55 55 A G H < S+ 0 0 3 -4,-1.9 -53,-0.4 -5,-0.2 -1,-0.2 0.730 115.8 43.9 -71.0 -23.7 40.3 29.8 51.4 56 56 A E H < S+ 0 0 103 -4,-1.4 -1,-0.2 -3,-0.4 -2,-0.2 0.814 114.6 47.0 -86.2 -35.7 37.7 31.9 53.4 57 57 A E H < S+ 0 0 60 -4,-2.6 -2,-0.2 -5,-0.2 -3,-0.2 0.808 91.7 96.8 -75.5 -31.9 35.2 32.4 50.5 58 58 A A < - 0 0 4 -4,-1.8 -56,-0.4 -5,-0.3 -35,-0.3 -0.271 42.8-178.9 -61.5 141.5 35.1 28.7 49.4 59 59 A D S S+ 0 0 43 -37,-2.4 2,-0.3 1,-0.2 -36,-0.2 0.359 74.8 29.4-111.1 1.4 32.4 26.3 50.6 60 60 A E E -B 22 0A 69 -38,-1.4 -38,-2.4 2,-0.0 2,-0.4 -0.988 58.7-157.3-158.1 145.2 33.8 23.3 48.7 61 61 A L E -B 21 0A 13 -2,-0.3 2,-0.4 -40,-0.2 -40,-0.2 -0.990 11.9-169.7-127.4 121.0 37.2 21.9 47.4 62 62 A E E -B 20 0A 74 -42,-2.6 -42,-2.7 -2,-0.4 2,-0.3 -0.906 4.5-165.6-104.0 139.1 37.4 19.4 44.5 63 63 A T E -B 19 0A 35 -2,-0.4 2,-0.4 -44,-0.2 -44,-0.2 -0.951 6.8-162.7-122.7 146.8 40.6 17.6 43.6 64 64 A I E -B 18 0A 50 -46,-2.6 -46,-2.1 -2,-0.3 2,-0.3 -0.971 11.6-148.6-127.3 113.1 41.5 15.6 40.4 65 65 A V E -B 17 0A 87 -2,-0.4 -48,-0.2 -48,-0.2 2,-0.2 -0.655 23.0-163.9 -79.9 134.1 44.4 13.2 40.4 66 66 A V - 0 0 14 -50,-1.9 3,-0.1 -2,-0.3 -1,-0.0 -0.670 30.2-109.1-118.6 171.5 46.1 13.0 36.9 67 67 A M S S- 0 0 153 -2,-0.2 2,-0.3 1,-0.2 -1,-0.1 0.890 87.1 -31.5 -66.6 -42.2 48.6 10.6 35.1 68 68 A N S > S- 0 0 74 -53,-0.1 4,-1.8 1,-0.0 3,-0.2 -0.936 72.7 -75.8-166.8 177.9 51.6 13.0 35.1 69 69 A E H > S+ 0 0 108 -2,-0.3 4,-1.9 1,-0.2 -52,-0.0 0.769 122.6 59.3 -65.2 -30.1 52.8 16.7 35.0 70 70 A R H > S+ 0 0 211 2,-0.2 4,-1.7 1,-0.2 -1,-0.2 0.922 107.3 46.1 -61.5 -46.9 52.0 16.9 31.2 71 71 A E H > S+ 0 0 67 -3,-0.2 4,-2.6 1,-0.2 5,-0.3 0.898 109.5 55.2 -64.0 -40.8 48.4 16.1 31.8 72 72 A A H X S+ 0 0 4 -4,-1.8 4,-2.2 1,-0.2 5,-0.2 0.908 105.9 53.2 -56.3 -42.8 48.2 18.6 34.7 73 73 A F H X S+ 0 0 135 -4,-1.9 4,-1.8 1,-0.2 -1,-0.2 0.944 115.6 36.5 -60.2 -52.2 49.5 21.4 32.5 74 74 A I H X S+ 0 0 101 -4,-1.7 4,-2.5 2,-0.2 -1,-0.2 0.887 115.8 52.2 -73.6 -39.7 46.8 20.9 29.7 75 75 A L H X S+ 0 0 41 -4,-2.6 4,-2.4 -5,-0.2 5,-0.2 0.928 110.6 49.3 -62.6 -43.0 43.8 20.0 32.0 76 76 A E H X S+ 0 0 40 -4,-2.2 4,-2.2 -5,-0.3 5,-0.2 0.945 112.1 48.0 -61.2 -47.7 44.4 23.2 34.2 77 77 A A H X S+ 0 0 32 -4,-1.8 4,-1.9 -5,-0.2 -1,-0.2 0.913 112.4 49.3 -59.4 -44.3 44.6 25.4 31.0 78 78 A N H X S+ 0 0 84 -4,-2.5 4,-1.9 1,-0.2 -1,-0.2 0.896 111.7 47.5 -62.0 -43.4 41.4 23.9 29.6 79 79 A L H X S+ 0 0 26 -4,-2.4 4,-2.3 2,-0.2 5,-0.3 0.867 109.7 52.6 -70.9 -37.2 39.4 24.3 32.8 80 80 A I H X S+ 0 0 28 -4,-2.2 4,-2.4 -5,-0.2 -1,-0.2 0.919 111.4 48.3 -60.3 -43.1 40.5 27.9 33.4 81 81 A K H < S+ 0 0 126 -4,-1.9 -2,-0.2 -5,-0.2 -1,-0.2 0.887 114.1 46.6 -64.0 -39.1 39.3 28.7 29.8 82 82 A K H < S+ 0 0 147 -4,-1.9 -2,-0.2 -5,-0.2 -1,-0.2 0.904 127.0 23.4 -68.9 -43.9 36.0 26.9 30.3 83 83 A Y H < S- 0 0 105 -4,-2.3 -2,-0.2 -5,-0.1 -3,-0.2 0.629 78.2-153.9-104.3 -19.4 35.1 28.5 33.7 84 84 A R < - 0 0 112 -4,-2.4 -4,-0.1 -5,-0.3 -3,-0.1 0.903 25.7-147.9 39.6 62.2 37.0 31.8 33.9 85 85 A P > - 0 0 2 0, 0.0 3,-1.8 0, 0.0 -57,-0.2 -0.241 15.8-115.5 -66.4 149.2 37.1 31.8 37.7 86 86 A K T 3 S+ 0 0 119 -59,-0.5 -57,-0.1 1,-0.3 -58,-0.1 0.761 112.3 44.8 -54.7 -34.5 37.0 35.1 39.6 87 87 A Y T 3 S+ 0 0 40 -59,-2.3 2,-0.4 2,-0.1 -1,-0.3 0.441 93.3 92.6 -93.0 -1.8 40.5 34.8 41.2 88 88 A N S < S- 0 0 17 -3,-1.8 -57,-0.0 -60,-0.2 2,-0.0 -0.773 82.1-114.9 -89.6 137.7 42.3 33.6 38.0 89 89 A V 0 0 124 -2,-0.4 -2,-0.1 1,-0.1 -1,-0.1 -0.322 360.0 360.0 -72.6 152.6 44.0 36.3 35.9 90 90 A R 0 0 203 -6,-0.1 -1,-0.1 -2,-0.0 -6,-0.0 0.064 360.0 360.0-120.8 360.0 42.6 36.9 32.4