==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=20-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA BINDING PROTEIN 23-DEC-04 1YD4 . COMPND 2 MOLECULE: UVRABC SYSTEM PROTEIN C; . SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; . AUTHOR J.J.TRUGLIO,B.RHAU,D.L.CROTEAU,L.WANG,M.SKORVAGA,E.KARAKAS, . 89 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5772.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 60 67.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 16 18.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 8 9.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 31 34.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 1 0 0 2 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 52 0, 0.0 55,-0.1 0, 0.0 58,-0.1 0.000 360.0 360.0 360.0 139.4 37.8 28.0 55.2 2 2 A K >> - 0 0 111 53,-0.4 4,-2.1 56,-0.4 3,-0.8 -0.321 360.0-125.6 -56.6 137.4 35.1 25.3 55.4 3 3 A E H 3> S+ 0 0 131 1,-0.2 4,-2.4 2,-0.2 5,-0.2 0.870 109.4 56.3 -55.5 -36.6 36.1 22.4 57.5 4 4 A K H 3> S+ 0 0 114 1,-0.2 4,-2.2 2,-0.2 -1,-0.2 0.812 106.5 49.8 -67.4 -28.4 35.3 19.9 54.7 5 5 A I H <> S+ 0 0 2 -3,-0.8 4,-2.8 2,-0.2 -1,-0.2 0.895 109.8 50.4 -75.0 -43.2 37.7 21.8 52.4 6 6 A R H X S+ 0 0 97 -4,-2.1 4,-2.5 2,-0.2 -2,-0.2 0.929 112.2 48.4 -55.5 -46.4 40.4 21.7 54.9 7 7 A K H X S+ 0 0 131 -4,-2.4 4,-1.9 2,-0.2 -2,-0.2 0.943 111.0 49.8 -60.1 -48.0 39.9 18.0 55.3 8 8 A K H X S+ 0 0 95 -4,-2.2 4,-0.6 1,-0.2 -1,-0.2 0.907 111.0 50.3 -59.6 -42.2 39.9 17.5 51.5 9 9 A I H >< S+ 0 0 0 -4,-2.8 3,-1.0 1,-0.2 -1,-0.2 0.936 110.5 48.7 -59.7 -47.0 43.1 19.5 51.3 10 10 A L H 3< S+ 0 0 68 -4,-2.5 -1,-0.2 1,-0.2 -2,-0.2 0.793 113.9 46.9 -67.8 -25.4 44.8 17.4 54.0 11 11 A L H 3< S+ 0 0 126 -4,-1.9 -1,-0.2 -5,-0.2 -2,-0.2 0.499 83.1 124.7 -90.6 -3.7 43.7 14.1 52.4 12 12 A A << - 0 0 13 -3,-1.0 -3,-0.0 -4,-0.6 29,-0.0 -0.285 62.3-115.0 -65.6 141.5 44.8 15.1 48.8 13 13 A P - 0 0 54 0, 0.0 24,-2.1 0, 0.0 2,-1.9 -0.271 18.1-111.3 -75.9 162.3 47.2 12.7 47.2 14 14 A E S S+ 0 0 129 22,-0.2 21,-0.1 21,-0.2 -2,-0.0 -0.486 83.9 110.7 -84.3 65.2 50.8 13.3 46.1 15 15 A E S S- 0 0 98 -2,-1.9 21,-2.7 53,-0.0 22,-0.1 -0.970 76.6 -91.2-141.5 153.9 49.8 13.1 42.5 16 16 A P + 0 0 17 0, 0.0 50,-2.1 0, 0.0 2,-0.3 -0.326 62.3 130.2 -65.6 151.5 49.4 15.3 39.6 17 17 A G E -AB 33 65A 0 16,-2.1 16,-2.4 48,-0.3 2,-0.4 -0.992 51.6-101.7 179.6 178.5 46.0 17.0 39.1 18 18 A V E -AB 32 64A 0 46,-2.4 46,-3.0 -2,-0.3 2,-0.4 -0.947 30.7-157.2-122.3 140.3 43.7 19.9 38.6 19 19 A Y E -AB 31 63A 5 12,-2.9 12,-2.1 -2,-0.4 2,-0.4 -0.933 5.6-164.3-126.1 149.3 41.8 21.6 41.4 20 20 A I E -AB 30 62A 8 42,-2.8 42,-2.9 -2,-0.4 2,-0.4 -0.941 5.9-159.2-136.2 108.7 38.6 23.7 41.3 21 21 A F E -AB 29 61A 0 8,-2.5 7,-3.0 -2,-0.4 8,-1.5 -0.727 25.9-173.6 -79.7 136.2 37.4 25.9 44.1 22 22 A K E -AB 27 60A 35 38,-2.4 37,-2.8 -2,-0.4 38,-1.6 -0.929 23.2-161.1-134.1 153.8 33.7 26.5 43.7 23 23 A N E > S-A 26 0A 34 3,-2.5 3,-2.0 -2,-0.3 35,-0.1 -0.983 82.6 -12.4-135.2 124.5 30.9 28.6 45.3 24 24 A K T 3 S- 0 0 169 -2,-0.4 -1,-0.1 1,-0.3 34,-0.0 0.864 130.9 -51.8 54.0 42.1 27.3 27.7 44.8 25 25 A G T 3 S+ 0 0 47 1,-0.2 -1,-0.3 0, 0.0 -3,-0.0 0.399 115.9 113.0 82.8 -2.0 28.2 25.3 42.0 26 26 A V E < S-A 23 0A 88 -3,-2.0 -3,-2.5 2,-0.0 -1,-0.2 -0.892 70.7-119.3-111.3 126.5 30.3 27.8 40.1 27 27 A P E +A 22 0A 13 0, 0.0 59,-0.5 0, 0.0 -5,-0.3 -0.468 31.3 174.7 -61.0 128.3 34.1 27.5 39.7 28 28 A I E + 0 0 6 -7,-3.0 59,-2.6 1,-0.4 2,-0.3 0.559 68.9 12.8-109.8 -19.5 35.8 30.5 41.3 29 29 A F E -A 21 0A 26 -8,-1.5 -8,-2.5 57,-0.2 2,-0.4 -0.895 60.5-168.6-157.3 134.6 39.5 29.4 40.8 30 30 A I E +A 20 0A 0 -2,-0.3 2,-0.3 -10,-0.2 -10,-0.2 -0.979 18.8 158.0-121.6 132.5 41.1 26.6 38.8 31 31 A G E -A 19 0A 2 -12,-2.1 -12,-2.9 -2,-0.4 2,-0.3 -0.884 26.6-133.2-141.2 175.1 44.7 25.5 39.2 32 32 A K E -A 18 0A 75 -2,-0.3 2,-0.3 -14,-0.3 -14,-0.2 -0.865 14.9-162.7-128.7 164.6 47.0 22.5 38.6 33 33 A A E -A 17 0A 8 -16,-2.4 -16,-2.1 -2,-0.3 3,-0.3 -0.998 29.9-148.2-148.5 143.6 49.6 20.7 40.6 34 34 A K S S+ 0 0 139 1,-0.3 2,-0.4 -2,-0.3 -1,-0.1 0.839 111.0 17.8 -70.5 -37.3 52.5 18.4 40.2 35 35 A R S > S- 0 0 121 1,-0.1 4,-2.3 -19,-0.1 -1,-0.3 -0.943 72.7-157.6-134.6 108.9 51.5 17.1 43.6 36 36 A L H > S+ 0 0 0 -21,-2.7 4,-2.9 -2,-0.4 5,-0.3 0.884 93.9 58.7 -52.6 -42.0 48.0 18.0 44.7 37 37 A S H > S+ 0 0 6 -24,-2.1 4,-2.0 2,-0.2 -1,-0.2 0.942 110.0 41.0 -49.2 -55.1 49.0 17.5 48.3 38 38 A N H > S+ 0 0 95 1,-0.2 4,-1.0 2,-0.2 -2,-0.2 0.930 118.4 44.5 -66.6 -49.0 51.8 20.1 48.2 39 39 A R H >< S+ 0 0 98 -4,-2.3 3,-0.5 1,-0.2 4,-0.4 0.925 114.6 47.0 -63.7 -46.7 49.9 22.7 46.2 40 40 A L H >< S+ 0 0 0 -4,-2.9 3,-1.6 -5,-0.3 4,-0.3 0.872 104.0 61.3 -67.6 -33.9 46.6 22.5 48.0 41 41 A R H >< S+ 0 0 114 -4,-2.0 3,-1.9 -5,-0.3 4,-0.5 0.819 91.5 69.4 -63.0 -26.3 48.3 22.7 51.5 42 42 A S G X< S+ 0 0 38 -4,-1.0 3,-0.9 -3,-0.5 5,-0.3 0.777 87.8 66.0 -61.1 -26.5 49.7 26.1 50.4 43 43 A Y G < S+ 0 0 8 -3,-1.6 -1,-0.3 -4,-0.4 -2,-0.2 0.704 91.0 63.0 -67.8 -20.3 46.1 27.3 50.7 44 44 A L G < S+ 0 0 30 -3,-1.9 -1,-0.2 -4,-0.3 -2,-0.2 0.703 110.6 37.3 -77.5 -21.6 46.2 26.7 54.5 45 45 A N S < S- 0 0 119 -3,-0.9 -1,-0.3 -4,-0.5 2,-0.2 -0.745 94.1-146.2-127.7 80.6 48.9 29.3 54.9 46 46 A P - 0 0 58 0, 0.0 -3,-0.1 0, 0.0 -4,-0.0 -0.314 19.7-173.8 -65.2 122.2 48.0 32.0 52.5 47 47 A Q S S+ 0 0 169 -5,-0.3 2,-0.3 -2,-0.2 -4,-0.1 0.628 73.6 30.3 -84.1 -12.8 50.9 33.8 50.9 48 48 A T S > S- 0 0 75 1,-0.1 4,-1.9 0, 0.0 5,-0.1 -0.948 80.4-115.1-140.9 161.0 48.7 36.3 49.2 49 49 A E H > S+ 0 0 131 -2,-0.3 4,-2.7 1,-0.2 5,-0.2 0.851 115.9 57.4 -61.2 -38.5 45.4 38.0 49.7 50 50 A K H > S+ 0 0 69 2,-0.2 4,-2.7 1,-0.2 -1,-0.2 0.931 105.2 49.2 -61.1 -43.2 44.0 36.3 46.6 51 51 A V H > S+ 0 0 18 1,-0.2 4,-2.0 2,-0.2 -2,-0.2 0.921 110.6 51.9 -62.5 -39.8 44.8 32.9 48.1 52 52 A F H X S+ 0 0 98 -4,-1.9 4,-1.5 1,-0.2 -2,-0.2 0.964 111.0 47.4 -57.5 -51.1 43.1 34.0 51.3 53 53 A R H X S+ 0 0 122 -4,-2.7 4,-2.9 1,-0.2 5,-0.3 0.898 109.0 53.2 -59.4 -47.0 40.0 35.0 49.4 54 54 A I H X S+ 0 0 1 -4,-2.7 4,-1.8 1,-0.2 -1,-0.2 0.950 112.1 44.4 -56.6 -49.1 39.7 31.9 47.3 55 55 A G H < S+ 0 0 2 -4,-2.0 -53,-0.4 -5,-0.2 -1,-0.2 0.754 117.3 45.8 -70.2 -23.7 39.8 29.6 50.4 56 56 A E H < S+ 0 0 99 -4,-1.5 -1,-0.2 -5,-0.2 -2,-0.2 0.824 114.8 44.7 -85.3 -34.7 37.4 31.8 52.3 57 57 A E H < S+ 0 0 56 -4,-2.9 -2,-0.2 -5,-0.2 -3,-0.2 0.799 92.4 98.4 -80.0 -28.1 34.8 32.3 49.5 58 58 A A < - 0 0 3 -4,-1.8 -56,-0.4 -5,-0.3 -35,-0.3 -0.294 43.2-178.6 -63.2 139.5 34.8 28.6 48.4 59 59 A D S S+ 0 0 36 -37,-2.8 2,-0.3 1,-0.2 -36,-0.2 0.361 74.8 26.2-107.5 1.3 32.0 26.3 49.6 60 60 A E E -B 22 0A 64 -38,-1.6 -38,-2.4 2,-0.0 2,-0.4 -0.988 60.1-155.9-156.7 149.2 33.4 23.3 47.7 61 61 A L E -B 21 0A 10 -2,-0.3 2,-0.4 -40,-0.2 -40,-0.2 -0.983 12.1-169.1-130.6 124.2 36.7 22.0 46.4 62 62 A E E -B 20 0A 62 -42,-2.9 -42,-2.8 -2,-0.4 2,-0.4 -0.898 3.2-165.6-107.8 140.7 36.9 19.5 43.6 63 63 A T E -B 19 0A 36 -2,-0.4 2,-0.5 -44,-0.2 -44,-0.2 -0.963 6.9-162.0-123.7 143.4 40.0 17.7 42.6 64 64 A I E -B 18 0A 60 -46,-3.0 -46,-2.4 -2,-0.4 2,-0.4 -0.977 12.7-148.2-124.8 115.2 40.7 15.7 39.5 65 65 A V E -B 17 0A 84 -2,-0.5 -48,-0.3 -48,-0.2 2,-0.2 -0.668 22.7-165.0 -79.2 134.8 43.7 13.3 39.6 66 66 A V - 0 0 11 -50,-2.1 3,-0.1 -2,-0.4 6,-0.0 -0.691 30.8-108.8-121.4 173.1 45.3 13.0 36.2 67 67 A M S S- 0 0 157 -2,-0.2 2,-0.3 1,-0.2 -1,-0.1 0.876 87.4 -30.4 -67.8 -38.6 47.8 10.7 34.5 68 68 A N S > S- 0 0 70 -53,-0.1 4,-1.9 1,-0.0 3,-0.2 -0.943 72.8 -76.0-169.2 179.0 50.7 13.1 34.4 69 69 A E H > S+ 0 0 104 -2,-0.3 4,-2.1 1,-0.2 5,-0.1 0.768 122.2 59.4 -69.0 -27.9 51.9 16.7 34.2 70 70 A R H > S+ 0 0 207 2,-0.2 4,-1.8 1,-0.2 -1,-0.2 0.925 107.9 45.8 -65.5 -45.2 51.2 16.9 30.5 71 71 A E H > S+ 0 0 67 -3,-0.2 4,-2.7 2,-0.2 5,-0.3 0.887 109.8 54.2 -61.3 -42.6 47.5 16.1 31.1 72 72 A A H X S+ 0 0 2 -4,-1.9 4,-2.2 1,-0.2 5,-0.3 0.911 106.7 54.4 -57.3 -40.7 47.4 18.5 34.0 73 73 A F H X S+ 0 0 135 -4,-2.1 4,-2.0 1,-0.2 -2,-0.2 0.951 115.0 35.0 -58.5 -55.7 48.6 21.2 31.7 74 74 A I H X S+ 0 0 97 -4,-1.8 4,-2.7 2,-0.2 5,-0.2 0.891 116.6 53.1 -72.8 -36.9 46.0 20.8 29.0 75 75 A L H X S+ 0 0 38 -4,-2.7 4,-2.7 -5,-0.2 5,-0.2 0.940 110.8 48.1 -63.3 -45.6 43.1 20.0 31.4 76 76 A E H X S+ 0 0 38 -4,-2.2 4,-2.4 -5,-0.3 5,-0.2 0.951 112.7 47.7 -58.1 -51.5 43.7 23.1 33.4 77 77 A A H X S+ 0 0 30 -4,-2.0 4,-2.3 -5,-0.3 -2,-0.2 0.919 113.6 49.0 -55.9 -45.2 43.9 25.3 30.3 78 78 A N H X S+ 0 0 84 -4,-2.7 4,-2.0 1,-0.2 -1,-0.2 0.912 112.0 46.6 -63.2 -44.5 40.7 23.8 29.0 79 79 A L H X S+ 0 0 25 -4,-2.7 4,-2.7 2,-0.2 5,-0.3 0.882 111.5 51.3 -68.4 -39.7 38.7 24.2 32.2 80 80 A I H X S+ 0 0 25 -4,-2.4 4,-3.1 -5,-0.2 -2,-0.2 0.939 111.2 48.7 -60.5 -46.0 39.9 27.8 32.6 81 81 A K H < S+ 0 0 125 -4,-2.3 -2,-0.2 -5,-0.2 -1,-0.2 0.900 115.1 45.3 -60.5 -39.2 38.8 28.6 29.1 82 82 A K H < S+ 0 0 144 -4,-2.0 -2,-0.2 -5,-0.2 -1,-0.2 0.917 127.6 24.1 -72.2 -42.8 35.5 27.0 29.7 83 83 A Y H < S- 0 0 108 -4,-2.7 -2,-0.2 -5,-0.1 -3,-0.2 0.658 77.5-155.6-100.9 -23.1 34.6 28.5 33.1 84 84 A R < - 0 0 166 -4,-3.1 -4,-0.1 -5,-0.3 -3,-0.1 0.923 27.9-145.6 41.4 61.9 36.7 31.7 33.2 85 85 A P > - 0 0 5 0, 0.0 3,-1.8 0, 0.0 -57,-0.2 -0.232 14.9-112.4 -64.2 149.2 36.7 31.6 37.0 86 86 A K T 3 S+ 0 0 132 -59,-0.5 -57,-0.2 1,-0.3 -58,-0.1 0.779 113.8 41.8 -39.8 -51.2 36.5 34.9 39.0 87 87 A Y T 3 S+ 0 0 36 -59,-2.6 2,-0.4 2,-0.0 -1,-0.3 0.407 91.5 96.4 -91.7 0.7 40.0 34.5 40.4 88 88 A N < 0 0 30 -3,-1.8 -57,-0.0 -60,-0.2 -59,-0.0 -0.767 360.0 360.0 -88.9 138.6 41.9 33.3 37.3 89 89 A V 0 0 161 -2,-0.4 -1,-0.1 0, 0.0 -2,-0.0 -0.000 360.0 360.0 -98.9 360.0 43.6 36.1 35.4