==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=20-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA-BINDING PROTEIN 14-APR-94 1YHB . COMPND 2 MOLECULE: GENE V PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROBACTERIA PHAGE F1; . AUTHOR Y.GUAN,H.ZHANG,R.N.H.KONINGS,C.W.HILBERS,T.C.TERWILLIGER, . 87 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6518.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 50 57.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 30 34.5 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 2 2.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 13 14.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 6 6.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 4 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 210 0, 0.0 2,-0.4 0, 0.0 61,-0.0 0.000 360.0 360.0 360.0 68.5 -0.6 18.7 2.5 2 2 A I - 0 0 59 61,-0.1 2,-0.6 35,-0.0 61,-0.4 -0.737 360.0-135.7 -81.4 138.9 -0.5 16.2 5.3 3 3 A K E -A 36 0A 112 33,-0.5 33,-2.4 -2,-0.4 2,-0.4 -0.855 26.1-176.9 -92.3 124.1 0.4 17.5 8.7 4 4 A V E -AB 35 61A 0 57,-2.9 57,-2.9 -2,-0.6 2,-0.4 -0.955 5.0-164.3-120.3 141.1 2.9 15.2 10.5 5 5 A E E -AB 34 60A 54 29,-2.4 29,-2.4 -2,-0.4 2,-0.7 -0.974 15.3-160.1-133.4 128.0 4.3 15.7 14.0 6 6 A I E - B 0 59A 0 53,-2.5 53,-2.3 -2,-0.4 27,-0.1 -0.896 26.4-148.5 -96.3 112.3 7.2 14.2 15.8 7 7 A K > - 0 0 81 -2,-0.7 3,-2.5 51,-0.2 4,-0.3 -0.543 28.3-102.1 -72.9 162.6 6.5 14.8 19.5 8 8 A P G > S+ 0 0 103 0, 0.0 3,-0.7 0, 0.0 -1,-0.1 0.780 124.7 56.0 -63.3 -21.3 9.3 15.3 22.1 9 9 A S G 3 S+ 0 0 111 1,-0.2 3,-0.2 2,-0.1 -3,-0.0 0.428 102.2 57.5 -84.1 -1.8 8.8 11.6 23.1 10 10 A Q G < + 0 0 12 -3,-2.5 22,-0.3 1,-0.1 -1,-0.2 0.342 66.8 115.9-108.4 2.3 9.4 10.5 19.5 11 11 A A S < S+ 0 0 45 -3,-0.7 2,-0.3 -4,-0.3 -1,-0.1 0.474 71.1 54.3 -53.6 -12.1 12.9 12.0 19.0 12 12 A Q - 0 0 127 -3,-0.2 20,-0.4 42,-0.1 2,-0.3 -0.789 68.2-138.3-123.5 167.0 14.6 8.6 18.6 13 13 A F - 0 0 51 -2,-0.3 2,-0.3 18,-0.1 18,-0.2 -0.740 8.5-138.1-114.4 171.7 14.4 5.4 16.6 14 14 A T E -C 30 0A 86 16,-1.9 16,-2.8 -2,-0.3 2,-0.5 -0.828 20.6-133.4-123.0 156.4 14.7 1.8 17.3 15 15 A T E -C 29 0A 74 -2,-0.3 2,-0.4 14,-0.2 14,-0.2 -0.971 15.7-170.2-120.1 135.3 16.5 -0.6 15.0 16 16 A R E -C 28 0A 134 12,-2.8 12,-3.5 -2,-0.5 2,-0.2 -0.931 19.3-179.0-119.7 137.9 15.2 -3.9 13.9 17 17 A S E +C 27 0A 82 -2,-0.4 2,-0.3 10,-0.3 10,-0.2 -0.696 15.6 127.9-136.1-178.3 17.5 -6.2 12.1 18 18 A G E -C 26 0A 24 8,-1.7 8,-2.5 -2,-0.2 2,-0.4 -0.927 45.7 -75.4 163.2-167.3 18.1 -9.5 10.3 19 19 A V E -C 25 0A 96 -2,-0.3 4,-0.1 6,-0.3 5,-0.1 -0.975 36.1-126.6-131.9 116.6 19.4 -11.4 7.3 20 20 A S - 0 0 34 4,-3.9 4,-0.1 -2,-0.4 6,-0.0 -0.143 33.0-100.8 -49.8 153.5 17.8 -11.8 3.8 21 21 A R S S+ 0 0 244 1,-0.2 2,-1.6 2,-0.2 -1,-0.1 0.822 120.4 54.6 -49.6 -47.0 17.1 -15.1 2.1 22 22 A Q S S- 0 0 148 2,-0.1 2,-0.7 1,-0.1 -1,-0.2 -0.722 132.1 -90.9 -92.8 76.2 20.1 -15.1 -0.2 23 23 A G S S+ 0 0 44 -2,-1.6 -2,-0.2 -4,-0.1 -1,-0.1 0.286 83.8 135.7 33.1 17.5 22.2 -14.6 2.9 24 24 A K - 0 0 119 -2,-0.7 -4,-3.9 -5,-0.1 -2,-0.1 -0.690 45.4-129.6-102.8 130.6 22.3 -10.8 3.2 25 25 A P E -C 19 0A 102 0, 0.0 2,-0.3 0, 0.0 -6,-0.3 0.025 21.3-176.2 -64.0 167.4 21.8 -8.6 6.3 26 26 A Y E -C 18 0A 98 -8,-2.5 -8,-1.7 2,-0.0 2,-0.4 -0.975 12.9-161.5-158.6 156.8 19.6 -5.6 6.9 27 27 A S E -C 17 0A 78 -2,-0.3 2,-0.5 -10,-0.2 -10,-0.3 -0.983 11.7-160.6-146.3 116.8 18.9 -3.2 9.6 28 28 A L E -C 16 0A 54 -12,-3.5 -12,-2.8 -2,-0.4 2,-0.5 -0.947 5.7-151.1-104.5 129.2 15.7 -1.1 9.7 29 29 A N E -C 15 0A 34 -2,-0.5 20,-3.0 20,-0.4 2,-0.5 -0.817 15.7-166.6 -96.2 125.8 15.3 2.1 11.7 30 30 A E E +CD 14 48A 34 -16,-2.8 -16,-1.9 -2,-0.5 2,-0.3 -0.901 9.2 178.9-118.1 131.9 11.8 2.9 12.9 31 31 A Q E - D 0 47A 2 16,-3.0 16,-3.1 -2,-0.5 2,-0.3 -0.921 19.4-133.7-122.6 153.5 10.5 6.0 14.3 32 32 A L E + D 0 46A 62 -20,-0.4 2,-0.3 -2,-0.3 14,-0.2 -0.794 28.7 161.4-101.9 151.4 6.9 7.0 15.5 33 33 A C E - D 0 45A 0 12,-1.9 12,-2.0 -2,-0.3 2,-0.5 -0.890 36.6-105.7-150.1-179.3 4.9 10.1 14.7 34 34 A Y E -AD 5 44A 78 -29,-2.4 -29,-2.4 -2,-0.3 2,-0.6 -0.962 26.0-164.9-119.1 117.9 1.5 11.6 14.6 35 35 A V E -AD 4 43A 11 8,-2.9 8,-3.1 -2,-0.5 2,-0.9 -0.854 18.5-134.7-105.9 126.2 -0.3 12.1 11.4 36 36 A D E +A 3 0A 64 -33,-2.4 -33,-0.5 -2,-0.6 4,-0.0 -0.664 28.2 172.4 -79.4 111.4 -3.3 14.4 11.3 37 37 A L - 0 0 108 -2,-0.9 -1,-0.1 4,-0.3 3,-0.1 0.065 60.3 -94.6-106.7 25.5 -5.9 12.5 9.3 38 38 A G S S+ 0 0 70 1,-0.2 -2,-0.1 2,-0.0 2,-0.0 0.410 89.2 121.2 80.4 -8.9 -8.8 14.9 10.0 39 39 A N S S- 0 0 100 2,-0.3 -1,-0.2 1,-0.1 -2,-0.1 -0.290 85.3 -88.0 -69.3 178.0 -10.2 12.9 12.9 40 40 A E S S+ 0 0 190 -3,-0.1 -1,-0.1 -4,-0.0 -2,-0.0 0.787 114.1 25.1 -56.1 -33.0 -10.6 14.4 16.5 41 41 A F S S- 0 0 173 -4,-0.0 -4,-0.3 0, 0.0 -2,-0.3 -0.922 93.8 -98.1-132.7 150.4 -7.1 13.4 17.3 42 42 A P - 0 0 62 0, 0.0 2,-0.3 0, 0.0 -6,-0.3 -0.410 43.4-119.9 -59.6 145.9 -3.9 12.8 15.2 43 43 A V E -D 35 0A 52 -8,-3.1 -8,-2.9 -2,-0.1 2,-0.6 -0.683 17.1-114.9 -94.3 140.7 -3.2 9.1 14.5 44 44 A L E +D 34 0A 94 -2,-0.3 2,-0.4 -10,-0.2 -10,-0.2 -0.618 38.7 178.6 -73.8 122.0 -0.0 7.1 15.5 45 45 A V E -D 33 0A 45 -12,-2.0 -12,-1.9 -2,-0.6 2,-0.4 -0.937 24.1-138.0-121.9 140.3 2.0 6.0 12.5 46 46 A K E -D 32 0A 105 -2,-0.4 2,-0.4 -14,-0.2 -14,-0.2 -0.815 20.8-164.3 -93.7 132.9 5.3 4.0 12.3 47 47 A I E -D 31 0A 3 -16,-3.1 -16,-3.0 -2,-0.4 2,-0.6 -0.979 14.0-140.3-119.5 127.6 7.7 5.3 9.7 48 48 A T E -D 30 0A 35 -2,-0.4 -18,-0.2 -18,-0.2 33,-0.1 -0.858 26.4-134.8 -80.6 120.8 10.7 3.3 8.5 49 49 A L - 0 0 5 -20,-3.0 -20,-0.4 -2,-0.6 2,-0.1 -0.323 21.4-101.8 -70.0 158.8 13.7 5.7 8.1 50 50 A D > - 0 0 30 4,-0.2 3,-2.4 1,-0.1 2,-0.1 -0.454 44.8 -81.6 -84.3 158.6 16.0 5.7 5.1 51 51 A E T 3 S+ 0 0 197 1,-0.3 -1,-0.1 -2,-0.1 -23,-0.0 -0.410 120.8 9.8 -54.3 117.9 19.5 4.1 4.9 52 52 A G T 3 S+ 0 0 76 1,-0.3 -1,-0.3 -2,-0.1 -2,-0.0 0.456 99.9 129.0 86.3 2.0 21.8 6.7 6.4 53 53 A Q < - 0 0 59 -3,-2.4 -1,-0.3 -24,-0.0 2,-0.1 -0.784 48.7-143.0 -94.6 130.4 19.0 8.9 7.8 54 54 A P - 0 0 97 0, 0.0 -4,-0.2 0, 0.0 3,-0.1 -0.432 39.7 -79.0 -76.5 160.4 18.9 10.0 11.5 55 55 A A - 0 0 23 -2,-0.1 2,-0.2 1,-0.1 -44,-0.1 -0.218 52.8-101.0 -62.4 146.9 15.6 10.3 13.4 56 56 A Y - 0 0 21 -46,-0.2 -1,-0.1 -44,-0.1 3,-0.1 -0.542 36.2-121.5 -68.4 133.4 13.5 13.3 12.7 57 57 A A - 0 0 60 -2,-0.2 -51,-0.2 1,-0.1 -1,-0.1 -0.493 43.6 -76.5 -70.9 147.1 13.8 16.0 15.4 58 58 A P S S+ 0 0 65 0, 0.0 2,-0.3 0, 0.0 -51,-0.2 -0.059 89.0 73.8 -38.2 135.8 10.5 17.2 17.3 59 59 A G E S-B 6 0A 26 -53,-2.3 -53,-2.5 -3,-0.1 2,-0.5 -0.872 81.0 -47.6 146.2-174.1 8.4 19.4 15.2 60 60 A L E +B 5 0A 63 -2,-0.3 26,-2.0 -55,-0.2 2,-0.3 -0.813 49.5 169.5-103.9 126.2 6.0 19.8 12.3 61 61 A Y E -BE 4 85A 29 -57,-2.9 -57,-2.9 -2,-0.5 2,-0.3 -0.859 21.0-147.9-125.0 161.5 6.6 18.2 9.0 62 62 A T E - E 0 84A 26 22,-2.6 22,-2.0 -2,-0.3 2,-0.4 -0.764 38.3 -86.6-118.4 179.7 4.7 17.6 5.8 63 63 A V E - E 0 83A 24 -61,-0.4 2,-0.2 -2,-0.3 20,-0.2 -0.688 35.5-133.7 -89.5 128.6 5.1 14.6 3.4 64 64 A H > - 0 0 86 18,-2.8 3,-2.2 -2,-0.4 18,-0.4 -0.562 19.6-121.0 -79.8 142.7 7.7 14.7 0.5 65 65 A L G > S+ 0 0 140 1,-0.3 3,-1.8 -2,-0.2 -1,-0.1 0.816 106.9 71.4 -51.6 -35.6 6.6 13.6 -3.0 66 66 A S G 3 S+ 0 0 54 1,-0.3 -1,-0.3 13,-0.0 14,-0.2 0.519 76.9 81.9 -63.5 0.4 9.2 10.8 -3.1 67 67 A S G < S+ 0 0 0 -3,-2.2 12,-3.3 15,-0.2 13,-0.5 0.595 87.7 71.2 -72.4 -14.3 7.1 8.9 -0.5 68 68 A F E < +F 78 0B 72 -3,-1.8 2,-0.3 10,-0.3 10,-0.2 -0.753 52.5 162.8-109.8 149.6 5.0 7.8 -3.4 69 69 A K E -F 77 0B 71 8,-2.3 8,-2.8 -2,-0.3 2,-0.6 -0.984 45.4 -95.8-151.1 161.9 5.3 5.4 -6.3 70 70 A V E -F 76 0B 101 -2,-0.3 6,-0.2 6,-0.2 5,-0.1 -0.752 47.9-140.5 -77.5 120.6 3.1 3.5 -8.8 71 71 A G > - 0 0 9 4,-3.2 3,-2.3 -2,-0.6 4,-0.1 -0.255 29.3 -88.5 -76.9 173.9 2.5 0.1 -7.4 72 72 A Q T 3 S+ 0 0 180 1,-0.3 -1,-0.1 2,-0.1 -2,-0.0 0.579 126.1 53.5 -62.1 -11.1 2.4 -3.2 -9.4 73 73 A F T 3 S- 0 0 179 2,-0.2 -1,-0.3 0, 0.0 3,-0.1 0.192 121.2-103.4-100.3 13.8 -1.4 -3.0 -10.1 74 74 A G S < S+ 0 0 59 -3,-2.3 2,-0.1 1,-0.3 -2,-0.1 0.427 84.3 116.9 81.8 -6.2 -1.0 0.6 -11.6 75 75 A S S S- 0 0 71 -5,-0.1 -4,-3.2 1,-0.1 2,-0.4 -0.509 73.5 -93.7 -89.6 164.4 -2.3 2.5 -8.6 76 76 A L E +F 70 0B 126 -6,-0.2 2,-0.3 -2,-0.1 -6,-0.2 -0.636 47.6 178.4 -73.4 132.4 -0.5 5.0 -6.4 77 77 A M E -F 69 0B 87 -8,-2.8 -8,-2.3 -2,-0.4 2,-0.5 -0.951 32.7-111.3-128.1 150.9 1.1 3.6 -3.3 78 78 A I E -F 68 0B 92 -2,-0.3 -10,-0.3 -10,-0.2 3,-0.1 -0.705 29.1-178.3 -81.8 124.8 3.2 5.0 -0.4 79 79 A D - 0 0 79 -12,-3.3 2,-0.3 -2,-0.5 -1,-0.2 0.900 68.7 -19.4 -79.3 -67.7 6.6 3.6 -0.6 80 80 A R - 0 0 83 -13,-0.5 2,-1.0 -14,-0.2 -1,-0.3 -0.981 69.3-115.9-145.2 133.5 8.3 5.1 2.5 81 81 A L - 0 0 26 -2,-0.3 2,-0.5 -3,-0.1 -14,-0.0 -0.635 39.8-175.9 -77.7 100.6 7.0 8.2 4.3 82 82 A R - 0 0 49 -2,-1.0 -18,-2.8 -18,-0.4 2,-0.3 -0.886 10.9-148.2-100.6 129.8 9.8 10.6 3.7 83 83 A L E -E 63 0A 14 -2,-0.5 -20,-0.2 -20,-0.2 -2,-0.0 -0.762 17.0-168.7-112.6 144.6 9.4 14.0 5.5 84 84 A V E -E 62 0A 52 -22,-2.0 -22,-2.6 -2,-0.3 -2,-0.0 -0.957 39.1 -95.7-119.7 146.8 10.3 17.6 4.9 85 85 A P E -E 61 0A 105 0, 0.0 -24,-0.2 0, 0.0 2,-0.1 -0.288 48.5-110.0 -56.9 142.4 10.1 20.5 7.5 86 86 A A 0 0 29 -26,-2.0 -26,-0.1 1,-0.1 -83,-0.0 -0.322 360.0 360.0 -76.9 161.0 6.9 22.6 7.3 87 87 A K 0 0 249 -2,-0.1 -1,-0.1 -26,-0.0 -26,-0.0 0.060 360.0 360.0 53.0 360.0 5.9 26.3 6.3