==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=20-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER UNKNOWN FUNCTION 07-JAN-05 1YHD . COMPND 2 MOLECULE: UPF0269 PROTEIN YGGX; . SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; . AUTHOR M.J.OSBORNE,N.SIDDIQUI,D.LANDGRAF,P.J.POMPOSIELLO,K.GEHRING . 92 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7194.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 56 60.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 3 3.3 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 6 6.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 6 6.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 34 37.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 3 3.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 196 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 176.9 -5.7 -17.9 50.2 2 2 A G + 0 0 90 1,-0.1 2,-0.4 2,-0.0 0, 0.0 -0.102 360.0 93.2-111.5 35.1 -3.7 -19.5 47.4 3 3 A S + 0 0 77 2,-0.0 2,-0.5 13,-0.0 -1,-0.1 -0.904 38.6 164.2-132.8 105.4 -6.5 -20.2 45.0 4 4 A R + 0 0 139 -2,-0.4 2,-0.4 13,-0.0 -2,-0.0 -0.777 19.0 138.4-123.3 87.1 -7.3 -17.6 42.3 5 5 A T - 0 0 79 -2,-0.5 11,-0.3 2,-0.0 12,-0.1 -0.834 25.4-177.3-133.9 96.1 -9.4 -19.1 39.6 6 6 A I E -A 15 0A 46 9,-0.8 9,-1.2 -2,-0.4 2,-0.6 -0.108 30.8-109.7 -79.6-176.8 -12.3 -17.0 38.2 7 7 A F E -A 14 0A 92 7,-0.3 7,-0.3 26,-0.3 5,-0.1 -0.892 30.1-143.1-122.3 99.1 -14.9 -17.8 35.6 8 8 A C - 0 0 0 5,-1.1 5,-0.4 -2,-0.6 27,-0.2 -0.218 5.9-156.6 -59.0 148.8 -14.4 -16.0 32.4 9 9 A T S S+ 0 0 44 25,-2.1 26,-0.1 3,-0.2 -1,-0.1 0.703 91.5 53.2 -98.4 -26.5 -17.5 -14.9 30.5 10 10 A F S S+ 0 0 56 24,-0.5 25,-0.1 1,-0.2 -1,-0.1 0.904 124.0 27.2 -74.6 -42.5 -15.9 -14.7 27.1 11 11 A L S S- 0 0 30 2,-0.1 -1,-0.2 0, 0.0 -2,-0.2 0.640 99.0-138.4 -91.4 -19.0 -14.6 -18.2 27.2 12 12 A Q + 0 0 127 1,-0.2 2,-0.2 -5,-0.1 -3,-0.2 0.895 67.9 99.1 60.5 41.8 -17.4 -19.3 29.6 13 13 A R S S- 0 0 169 -5,-0.4 -5,-1.1 0, 0.0 2,-0.7 -0.751 83.2 -81.6-140.6-173.1 -14.8 -21.3 31.6 14 14 A E E +A 7 0A 135 -7,-0.3 -7,-0.3 -2,-0.2 2,-0.2 -0.878 52.5 166.9-104.5 111.9 -12.7 -21.1 34.8 15 15 A A E -A 6 0A 15 -9,-1.2 -9,-0.8 -2,-0.7 0, 0.0 -0.552 49.8-105.3-113.6 179.6 -9.5 -19.1 34.4 16 16 A E - 0 0 109 -11,-0.3 -9,-0.1 -2,-0.2 -2,-0.0 0.592 56.1-151.9 -81.6 -11.2 -6.9 -17.6 36.7 17 17 A G - 0 0 7 -11,-0.1 19,-0.1 -12,-0.1 16,-0.1 0.131 24.4 -64.5 62.1 174.4 -8.3 -14.1 36.1 18 18 A Q - 0 0 12 14,-0.7 3,-0.1 13,-0.2 -12,-0.1 -0.263 27.4-145.4 -88.6 178.7 -6.2 -10.9 36.3 19 19 A D S S+ 0 0 124 1,-0.3 2,-0.4 -2,-0.1 -1,-0.1 0.598 81.1 32.8-117.5 -24.5 -4.5 -9.4 39.3 20 20 A F S S- 0 0 133 12,-0.0 -1,-0.3 0, 0.0 2,-0.1 -1.000 86.4-104.9-140.0 138.7 -4.9 -5.7 38.5 21 21 A Q - 0 0 77 -2,-0.4 8,-0.1 1,-0.2 7,-0.1 -0.365 30.3-178.3 -61.6 132.0 -7.6 -3.6 36.7 22 22 A L + 0 0 77 6,-0.4 -1,-0.2 -2,-0.1 6,-0.1 0.816 64.8 55.3 -99.5 -42.5 -6.5 -2.6 33.2 23 23 A Y S S- 0 0 25 5,-0.3 9,-0.1 1,-0.1 2,-0.1 -0.443 87.5-110.1 -88.3 164.7 -9.6 -0.6 32.2 24 24 A P S > S- 0 0 89 0, 0.0 4,-2.9 0, 0.0 5,-0.4 -0.220 71.0 -0.1 -87.2-178.9 -11.0 2.4 34.1 25 25 A G T 4 S- 0 0 58 1,-0.2 4,-0.5 2,-0.2 59,-0.1 0.022 120.7 -34.8 41.2-141.3 -14.3 2.8 36.1 26 26 A E T >> S+ 0 0 56 57,-0.4 4,-2.2 2,-0.2 3,-0.6 0.850 132.9 67.0 -79.5 -38.4 -16.6 -0.1 36.3 27 27 A L H 3> S+ 0 0 13 56,-0.3 4,-2.3 1,-0.3 5,-0.2 0.935 101.7 48.0 -47.9 -54.2 -15.8 -1.4 32.7 28 28 A G H 3X S+ 0 0 0 -4,-2.9 4,-2.9 1,-0.2 -6,-0.4 0.811 108.6 58.5 -58.5 -28.4 -12.3 -2.2 33.7 29 29 A K H <> S+ 0 0 95 -3,-0.6 4,-1.5 -4,-0.5 -2,-0.2 0.980 106.3 43.6 -64.9 -58.3 -13.8 -4.0 36.8 30 30 A R H X>S+ 0 0 29 -4,-2.2 4,-4.7 2,-0.2 5,-1.1 0.884 117.6 48.0 -55.8 -40.1 -16.0 -6.4 34.9 31 31 A I H X5S+ 0 0 2 -4,-2.3 4,-1.7 -5,-0.3 -2,-0.2 0.985 114.1 44.0 -63.4 -56.8 -13.1 -7.1 32.5 32 32 A Y H <5S+ 0 0 75 -4,-2.9 -14,-0.7 -5,-0.2 -1,-0.2 0.678 126.4 37.7 -60.1 -18.2 -10.6 -7.6 35.2 33 33 A N H <5S+ 0 0 74 -4,-1.5 -26,-0.3 -5,-0.2 -2,-0.2 0.876 134.3 14.9 -99.2 -57.9 -13.3 -9.7 36.9 34 34 A E H <5S+ 0 0 81 -4,-4.7 -25,-2.1 -5,-0.2 2,-0.9 0.653 115.8 72.1 -94.8 -19.2 -15.2 -11.7 34.2 35 35 A I S < - 0 0 0 -2,-0.9 4,-2.4 -19,-0.1 5,-0.2 -0.014 34.4 -96.4 -61.8 172.0 -9.6 -13.3 32.2 37 37 A K H > S+ 0 0 110 1,-0.2 4,-2.0 2,-0.2 5,-0.1 0.869 125.6 55.5 -59.5 -37.8 -6.2 -12.6 30.8 38 38 A E H > S+ 0 0 117 1,-0.2 4,-0.6 2,-0.2 -1,-0.2 0.929 110.3 43.7 -61.4 -47.0 -6.8 -15.1 28.0 39 39 A A H >> S+ 0 0 0 1,-0.2 4,-1.1 2,-0.2 3,-0.9 0.878 111.1 55.1 -66.3 -38.6 -10.0 -13.4 26.9 40 40 A W H 3X S+ 0 0 18 -4,-2.4 4,-3.2 1,-0.3 3,-0.4 0.867 101.6 57.7 -62.7 -37.0 -8.4 -10.0 27.2 41 41 A A H 3X S+ 0 0 66 -4,-2.0 4,-0.8 1,-0.2 -1,-0.3 0.727 104.0 54.0 -66.1 -20.7 -5.6 -11.1 24.8 42 42 A Q H S+ 0 0 18 -4,-2.1 5,-2.8 2,-0.2 4,-0.3 0.847 115.0 43.4 -74.9 -36.0 -8.6 1.6 16.3 52 52 A N H <5S+ 0 0 120 -4,-1.1 -2,-0.2 -5,-0.2 -1,-0.2 0.837 120.9 40.8 -78.0 -35.2 -6.5 1.6 13.1 53 53 A E H <5S+ 0 0 130 -4,-3.0 -3,-0.2 1,-0.2 -2,-0.2 0.954 122.8 36.9 -77.9 -54.2 -9.3 0.4 10.9 54 54 A K T <5S- 0 0 89 -4,-2.1 -3,-0.2 -5,-0.3 -1,-0.2 0.549 111.3-122.3 -75.0 -6.6 -12.2 2.4 12.3 55 55 A K T 5 + 0 0 163 -4,-0.3 -3,-0.2 -5,-0.1 -4,-0.1 0.981 49.1 172.1 62.8 59.2 -9.7 5.3 12.8 56 56 A L < - 0 0 13 -5,-2.8 2,-0.2 -6,-0.1 3,-0.1 -0.155 25.2-144.4 -87.4-174.2 -10.2 5.7 16.5 57 57 A N > - 0 0 79 3,-0.2 3,-1.5 1,-0.1 7,-0.6 -0.729 10.9-163.8-160.2 103.1 -8.3 7.8 19.0 58 58 A M T 3 S+ 0 0 92 1,-0.3 -1,-0.1 -2,-0.2 6,-0.0 0.699 96.0 60.9 -60.4 -18.9 -7.5 6.8 22.6 59 59 A M T 3 S+ 0 0 178 -3,-0.1 2,-0.4 5,-0.0 -1,-0.3 0.755 95.6 72.1 -80.0 -25.0 -6.7 10.5 23.2 60 60 A N S <> S- 0 0 88 -3,-1.5 4,-2.5 1,-0.1 -3,-0.2 -0.755 72.0-147.9 -94.8 137.2 -10.2 11.5 22.3 61 61 A A H > S+ 0 0 75 -2,-0.4 4,-1.9 1,-0.2 5,-0.2 0.804 97.7 62.7 -70.7 -29.8 -13.1 10.7 24.7 62 62 A E H 4 S+ 0 0 118 1,-0.2 4,-0.3 2,-0.2 -1,-0.2 0.870 114.2 32.7 -63.3 -37.8 -15.5 10.3 21.7 63 63 A H H >> S+ 0 0 57 -6,-0.4 4,-2.1 -3,-0.2 3,-0.8 0.875 111.0 63.5 -85.4 -42.9 -13.4 7.4 20.4 64 64 A R H 3X S+ 0 0 134 -4,-2.5 4,-1.7 -7,-0.6 3,-0.3 0.920 105.3 46.4 -46.3 -53.3 -12.3 6.0 23.8 65 65 A K H 3X S+ 0 0 109 -4,-1.9 4,-0.8 1,-0.2 -1,-0.3 0.788 107.4 61.0 -61.7 -27.1 -15.9 5.3 24.7 66 66 A L H X> S+ 0 0 60 -3,-0.8 4,-1.9 -4,-0.3 3,-0.6 0.926 101.6 50.4 -66.4 -45.1 -16.3 3.8 21.3 67 67 A L H 3X S+ 0 0 6 -4,-2.1 4,-2.6 -3,-0.3 3,-0.3 0.955 107.0 53.2 -56.8 -52.3 -13.7 1.1 22.0 68 68 A E H 3X S+ 0 0 33 -4,-1.7 4,-0.9 1,-0.2 -1,-0.3 0.752 107.7 55.7 -54.9 -23.8 -15.3 0.2 25.2 69 69 A Q H X>S+ 0 0 0 -4,-2.6 4,-4.0 1,-0.2 3,-0.9 0.868 101.7 56.4 -44.7 -44.2 -15.1 -4.8 23.3 72 72 A V H 3<>S+ 0 0 8 -4,-0.9 5,-0.5 1,-0.3 -1,-0.2 0.967 102.2 52.1 -53.7 -59.3 -18.5 -5.6 24.9 73 73 A N H 3<5S+ 0 0 98 -4,-1.2 -1,-0.3 1,-0.2 -2,-0.2 0.710 119.5 40.1 -51.2 -20.7 -19.9 -7.0 21.7 74 74 A F H <<5S+ 0 0 65 -4,-1.1 -2,-0.2 -3,-0.9 -1,-0.2 0.864 139.6 4.8 -95.2 -49.3 -16.8 -9.2 21.7 75 75 A L T <5S+ 0 0 6 -4,-4.0 -3,-0.2 -5,-0.2 -2,-0.1 0.824 137.9 38.6-103.3 -49.9 -16.4 -10.1 25.3 76 76 A F T >>