==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=7-AUG-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER LIPID BINDING PROTEIN 27-APR-11 2YH5 . COMPND 2 MOLECULE: DAPX PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; . AUTHOR K.ZETH,R.ALBRECHT . 121 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6483.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 88 72.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 36 29.8 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 0.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 2 1.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 0.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 9 7.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 11 9.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 31 25.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 3 2.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 0 1 1 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 202 A T 0 0 171 0, 0.0 2,-0.1 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 -24.4 17.3 19.5 30.6 2 203 A T - 0 0 90 1,-0.1 2,-2.1 19,-0.0 18,-0.1 -0.467 360.0 -97.0 -65.8 153.9 17.6 18.8 26.8 3 204 A M - 0 0 8 -2,-0.1 114,-0.1 114,-0.1 115,-0.1 -0.362 53.0-176.9 -85.2 68.2 16.4 21.7 24.6 4 205 A D - 0 0 61 -2,-2.1 16,-2.6 15,-0.1 2,-0.4 -0.264 12.0-148.6 -62.4 146.5 12.9 20.5 23.8 5 206 A V E -A 19 0A 4 14,-0.2 2,-0.3 105,-0.1 14,-0.2 -0.952 14.9-176.7-122.7 138.1 10.8 22.6 21.5 6 207 A Q E -A 18 0A 79 12,-2.4 12,-2.5 -2,-0.4 2,-0.4 -0.957 25.5-121.6-133.2 149.7 7.0 22.9 21.6 7 208 A S E +A 17 0A 41 -2,-0.3 2,-0.2 10,-0.2 10,-0.2 -0.749 46.8 147.0 -85.9 140.0 4.4 24.6 19.5 8 209 A A E -A 16 0A 24 8,-2.6 8,-2.0 -2,-0.4 2,-0.3 -0.791 40.7-111.2-153.9-178.0 2.3 27.2 21.3 9 210 A A E -A 15 0A 48 6,-0.3 5,-0.0 -2,-0.2 2,-0.0 -0.948 27.5-119.8-126.8 157.5 0.5 30.3 21.0 10 211 A D > - 0 0 36 4,-2.7 3,-1.9 -2,-0.3 6,-0.1 -0.106 49.1 -79.7 -80.5-176.4 1.2 33.8 22.6 11 212 A D T 3 S+ 0 0 178 1,-0.3 -1,-0.1 2,-0.1 -2,-0.0 0.655 133.2 49.0 -65.3 -11.9 -1.2 35.6 24.9 12 213 A T T 3 S- 0 0 108 2,-0.1 -1,-0.3 0, 0.0 0, 0.0 0.340 122.5-101.3-107.3 5.1 -3.2 36.8 21.9 13 214 A G S < S+ 0 0 47 -3,-1.9 -2,-0.1 1,-0.3 0, 0.0 0.545 77.6 135.2 88.5 8.6 -3.5 33.4 20.2 14 215 A L - 0 0 76 1,-0.1 -4,-2.7 88,-0.0 -1,-0.3 -0.588 61.9 -89.2 -94.7 152.0 -0.7 33.9 17.6 15 216 A P E +A 9 0A 11 0, 0.0 2,-0.3 0, 0.0 -6,-0.3 -0.227 54.4 151.7 -67.5 140.9 1.8 31.2 16.9 16 217 A M E -A 8 0A 24 -8,-2.0 -8,-2.6 76,-0.1 2,-0.3 -0.968 35.7-122.7-153.1 165.0 5.1 30.9 18.8 17 218 A L E -AB 7 91A 0 74,-3.0 74,-2.8 -2,-0.3 2,-0.4 -0.863 14.5-150.2-104.2 151.0 7.6 28.2 19.8 18 219 A V E -AB 6 90A 4 -12,-2.5 -12,-2.4 -2,-0.3 2,-0.4 -0.995 13.8-164.1-124.2 125.4 8.7 27.5 23.4 19 220 A V E -AB 5 89A 0 70,-3.1 70,-2.5 -2,-0.4 2,-0.3 -0.931 24.0-119.3-109.2 134.9 12.2 26.2 23.9 20 221 A R E S+ B 0 88A 120 -16,-2.6 68,-0.3 -2,-0.4 67,-0.0 -0.516 78.0 74.6 -74.0 120.4 13.5 24.5 27.0 21 222 A G S S- 0 0 7 66,-2.2 64,-0.2 -2,-0.3 -2,-0.2 -0.184 85.3 -85.2 146.1 143.8 16.4 26.8 28.2 22 223 A P >> - 0 0 53 0, 0.0 4,-2.7 0, 0.0 3,-0.5 -0.262 49.9 -98.9 -62.6 162.1 16.8 30.1 29.9 23 224 A F H 3> S+ 0 0 27 63,-0.4 4,-2.8 65,-0.3 5,-0.1 0.833 120.2 41.3 -57.1 -50.7 16.8 33.2 27.8 24 225 A N H 3> S+ 0 0 78 2,-0.2 4,-2.2 1,-0.2 -1,-0.3 0.817 113.7 54.0 -72.1 -28.1 20.6 33.8 27.6 25 226 A V H <> S+ 0 0 48 -3,-0.5 4,-1.2 2,-0.2 -2,-0.2 0.955 114.0 41.3 -61.9 -54.4 21.3 30.1 27.1 26 227 A V H >X S+ 0 0 0 -4,-2.7 4,-1.6 1,-0.2 3,-0.6 0.929 112.7 55.3 -63.8 -44.3 18.9 30.0 24.1 27 228 A W H 3< S+ 0 0 17 -4,-2.8 3,-0.3 -5,-0.3 -1,-0.2 0.913 109.6 47.0 -51.6 -45.1 20.2 33.4 22.9 28 229 A Q H 3< S+ 0 0 119 -4,-2.2 4,-0.3 1,-0.2 -1,-0.3 0.697 115.3 45.6 -73.2 -23.0 23.7 32.1 22.8 29 230 A R H S+ 0 0 55 0, 0.0 4,-2.1 0, 0.0 -1,-0.2 0.918 114.5 44.9 -57.8 -45.9 22.9 31.6 15.8 32 233 A A H > S+ 0 0 38 -4,-0.3 4,-1.0 2,-0.2 -2,-0.2 0.886 116.0 46.8 -62.9 -40.9 24.4 28.2 15.5 33 234 A A H >X S+ 0 0 0 -4,-2.0 3,-0.6 2,-0.2 4,-0.6 0.926 111.3 51.9 -67.3 -45.0 21.0 26.5 15.5 34 235 A L H ><>S+ 0 0 0 -4,-3.3 5,-2.4 1,-0.3 3,-1.4 0.897 102.2 59.8 -56.9 -42.1 19.7 28.9 12.9 35 236 A E H ><5S+ 0 0 140 -4,-2.1 3,-1.2 -5,-0.3 -1,-0.3 0.871 99.2 58.1 -55.2 -36.5 22.6 28.2 10.7 36 237 A K H <<5S+ 0 0 67 -4,-1.0 -1,-0.3 -3,-0.6 -2,-0.2 0.683 108.7 45.4 -68.1 -18.5 21.6 24.6 10.6 37 238 A V T <<5S- 0 0 2 -3,-1.4 21,-0.3 -4,-0.6 -1,-0.2 0.250 124.2 -95.3-110.5 9.1 18.2 25.4 9.2 38 239 A G T < 5S+ 0 0 20 -3,-1.2 18,-2.1 -4,-0.3 2,-0.6 0.661 81.7 132.4 86.4 15.2 19.2 27.9 6.5 39 240 A M E < -C 55 0A 3 -5,-2.4 2,-0.5 16,-0.2 -1,-0.2 -0.924 39.6-160.0-105.7 118.0 18.7 31.0 8.6 40 241 A K E -C 54 0A 142 14,-2.8 14,-2.3 -2,-0.6 2,-0.8 -0.859 15.1-136.2 -97.8 127.2 21.5 33.6 8.6 41 242 A V E +C 53 0A 41 -2,-0.5 12,-0.2 12,-0.2 3,-0.1 -0.731 25.1 175.9 -84.5 115.6 21.5 36.0 11.4 42 243 A T E - 0 0 83 10,-2.1 2,-0.3 -2,-0.8 -1,-0.2 0.708 66.7 -12.0 -93.3 -24.0 22.2 39.4 9.9 43 244 A D E -C 52 0A 94 9,-1.1 9,-2.8 2,-0.0 -1,-0.3 -0.970 59.3-171.1-166.2 159.2 21.8 41.4 13.2 44 245 A S E -C 51 0A 45 -2,-0.3 2,-0.3 7,-0.2 7,-0.2 -0.971 10.4-163.9-156.1 156.2 20.6 40.9 16.7 45 246 A T E > > -C 50 0A 45 5,-2.6 5,-1.9 -2,-0.3 3,-1.4 -0.900 5.9-163.8-146.0 100.8 19.9 43.1 19.7 46 247 A R G > 5S+ 0 0 109 -2,-0.3 3,-1.4 1,-0.3 -1,-0.1 0.856 86.3 62.3 -60.7 -37.1 19.6 41.3 23.0 47 248 A S G 3 5S+ 0 0 115 1,-0.3 -1,-0.3 2,-0.1 0, 0.0 0.733 113.5 37.2 -63.9 -20.3 18.0 44.1 24.9 48 249 A Q G < 5S- 0 0 128 -3,-1.4 -1,-0.3 2,-0.2 -2,-0.2 0.351 106.4-127.2-102.1 -7.6 15.1 44.0 22.5 49 250 A G T < 5 + 0 0 5 -3,-1.4 33,-3.0 -4,-0.5 2,-0.4 0.743 64.1 142.0 60.6 29.6 15.1 40.2 22.2 50 251 A N E < +CD 45 81A 26 -5,-1.9 -5,-2.6 31,-0.2 2,-0.4 -0.868 32.4 179.5-112.7 137.7 15.3 40.7 18.4 51 252 A M E -CD 44 80A 0 29,-2.4 29,-2.8 -2,-0.4 2,-0.5 -0.981 18.5-144.7-125.8 142.2 17.1 38.9 15.7 52 253 A A E -CD 43 79A 27 -9,-2.8 -10,-2.1 -2,-0.4 -9,-1.1 -0.916 26.7-177.2-100.7 128.0 17.0 39.7 12.0 53 254 A V E -CD 41 78A 2 25,-2.9 25,-2.7 -2,-0.5 2,-0.5 -0.960 24.0-153.5-127.2 149.1 17.3 36.6 9.9 54 255 A T E -CD 40 77A 51 -14,-2.3 -14,-2.8 -2,-0.4 2,-0.5 -0.985 23.8-159.0-116.6 124.7 17.5 35.8 6.2 55 256 A Y E +CD 39 76A 5 21,-3.2 21,-2.2 -2,-0.5 -16,-0.2 -0.898 20.5 173.2-111.1 131.9 16.1 32.4 5.3 56 257 A K - 0 0 139 -18,-2.1 18,-0.1 -2,-0.5 19,-0.0 -0.987 39.2-115.7-128.3 117.7 16.7 30.2 2.3 57 258 A P - 0 0 45 0, 0.0 -19,-0.1 0, 0.0 2,-0.1 -0.153 29.4-114.1 -47.4 146.6 15.2 26.8 2.5 58 259 A L - 0 0 33 -21,-0.3 2,-0.0 1,-0.1 12,-0.0 -0.385 33.0-102.0 -68.6 158.8 17.5 23.8 2.5 59 260 A S > - 0 0 61 1,-0.1 4,-2.7 -2,-0.1 5,-0.2 -0.338 38.7-103.0 -65.8 160.2 17.6 21.4 -0.3 60 261 A D H > S+ 0 0 134 1,-0.2 4,-2.4 2,-0.2 5,-0.1 0.903 124.6 51.8 -53.5 -43.1 15.8 18.1 0.3 61 262 A S H > S+ 0 0 63 2,-0.2 4,-2.4 1,-0.2 -1,-0.2 0.906 109.9 48.7 -60.1 -43.6 19.0 16.3 0.8 62 263 A D H > S+ 0 0 76 2,-0.2 4,-2.3 1,-0.2 -2,-0.2 0.896 109.0 52.5 -69.6 -36.6 20.1 18.9 3.4 63 264 A W H X>S+ 0 0 7 -4,-2.7 4,-2.4 1,-0.2 5,-1.9 0.931 109.4 51.8 -61.1 -41.7 16.7 18.7 5.2 64 265 A Q H <5S+ 0 0 160 -4,-2.4 -2,-0.2 -5,-0.2 -1,-0.2 0.942 108.7 48.5 -58.5 -44.7 17.4 14.9 5.3 65 266 A E H <5S+ 0 0 125 -4,-2.4 -1,-0.2 1,-0.2 -2,-0.2 0.873 113.0 49.4 -66.3 -33.1 20.8 15.4 6.9 66 267 A L H <5S- 0 0 16 -4,-2.3 -1,-0.2 2,-0.2 -2,-0.2 0.892 112.6-122.6 -68.0 -41.7 19.3 17.8 9.4 67 268 A G T <5S+ 0 0 57 -4,-2.4 2,-0.3 1,-0.3 -3,-0.2 0.707 73.7 87.0 101.2 22.6 16.6 15.4 10.3 68 269 A A S - E 0 88A 68 3,-2.2 3,-1.2 -2,-0.7 2,-1.0 -0.252 54.0-114.9-117.3 41.3 10.1 32.5 30.4 86 287 A D T 3 S+ 0 0 125 1,-0.3 -63,-0.4 0, 0.0 -1,-0.2 -0.513 105.1 14.9 68.0 -94.8 12.7 31.6 33.2 87 288 A N T 3 S+ 0 0 123 -2,-1.0 -66,-2.2 -65,-0.2 -1,-0.3 0.447 135.7 46.5 -88.3 -4.0 13.6 28.0 32.4 88 289 A R E < -BE 20 85A 108 -3,-1.2 -3,-2.2 -68,-0.3 2,-0.3 -0.880 69.8-148.3-126.8 166.4 12.2 28.3 29.0 89 290 A S E -BE 19 84A 0 -70,-2.5 -70,-3.1 -2,-0.3 2,-0.3 -0.981 12.6-133.5-131.9 148.9 12.3 30.9 26.2 90 291 A S E -BE 18 83A 20 -7,-1.9 -7,-2.2 -2,-0.3 2,-0.4 -0.771 13.6-164.0 -99.5 149.2 9.8 31.8 23.6 91 292 A L E +BE 17 82A 0 -74,-2.8 -74,-3.0 -2,-0.3 2,-0.4 -0.998 9.1 177.1-129.4 129.1 10.5 32.3 19.8 92 293 A Q E - E 0 81A 34 -11,-2.2 -11,-2.7 -2,-0.4 2,-0.3 -0.978 17.4-147.7-136.1 120.4 8.1 34.1 17.5 93 294 A F E - E 0 80A 3 -2,-0.4 8,-0.8 -13,-0.2 2,-0.4 -0.707 17.8-177.2 -84.5 139.7 8.8 34.7 13.8 94 295 A I E -FE 100 79A 22 -15,-2.7 -15,-3.3 -2,-0.3 6,-0.2 -0.993 17.9-135.5-134.5 133.9 7.4 37.9 12.3 95 296 A D > - 0 0 47 4,-2.9 3,-2.2 -2,-0.4 -17,-0.2 -0.351 37.5 -94.7 -84.2 176.5 7.6 38.9 8.7 96 297 A P T 3 S+ 0 0 112 0, 0.0 -1,-0.1 0, 0.0 -18,-0.1 0.702 124.7 59.6 -67.8 -16.1 8.5 42.4 7.6 97 298 A K T 3 S- 0 0 176 2,-0.1 3,-0.1 3,-0.0 -2,-0.0 0.452 122.4-106.1 -82.6 -0.1 4.8 43.4 7.3 98 299 A G S < S+ 0 0 50 -3,-2.2 2,-0.4 1,-0.3 0, 0.0 0.588 75.6 139.9 80.4 17.5 4.5 42.5 11.1 99 300 A H - 0 0 106 1,-0.1 -4,-2.9 -5,-0.0 -1,-0.3 -0.699 46.7-132.6 -96.3 135.8 2.6 39.3 10.4 100 301 A T B -F 94 0A 35 -2,-0.4 -6,-0.2 -6,-0.2 3,-0.1 -0.290 31.3 -96.8 -63.6 163.4 3.1 36.1 12.3 101 302 A L - 0 0 9 -8,-0.8 -1,-0.1 -86,-0.2 2,-0.1 -0.284 47.9 -91.6 -64.4 162.7 3.5 32.7 10.6 102 303 A T > - 0 0 80 1,-0.1 4,-2.4 -88,-0.1 5,-0.2 -0.451 37.4-112.0 -70.8 160.2 0.5 30.5 10.2 103 304 A Q H > S+ 0 0 68 1,-0.2 4,-2.8 2,-0.2 5,-0.2 0.920 119.1 53.4 -62.7 -35.3 0.0 28.0 13.1 104 305 A S H > S+ 0 0 90 2,-0.2 4,-2.2 1,-0.2 -1,-0.2 0.891 107.3 50.1 -68.9 -36.2 0.8 25.1 10.8 105 306 A Q H > S+ 0 0 44 2,-0.2 4,-1.3 1,-0.2 -1,-0.2 0.917 113.2 48.0 -60.3 -48.1 4.1 26.8 9.6 106 307 A N H X S+ 0 0 1 -4,-2.4 4,-0.6 2,-0.2 3,-0.4 0.916 108.9 52.8 -58.5 -46.5 5.0 27.3 13.3 107 308 A D H >X S+ 0 0 71 -4,-2.8 3,-1.3 1,-0.3 4,-0.6 0.904 107.0 52.6 -55.9 -42.7 4.1 23.7 14.1 108 309 A A H 3X S+ 0 0 37 -4,-2.2 4,-1.1 1,-0.3 3,-0.3 0.766 98.6 64.6 -67.4 -26.4 6.3 22.5 11.4 109 310 A L H 3X S+ 0 0 1 -4,-1.3 4,-2.9 -3,-0.4 5,-0.3 0.671 86.1 75.7 -68.0 -20.2 9.2 24.6 12.8 110 311 A V H