==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=20-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA BINDING PROTEIN 26-JAN-05 1YNX . COMPND 2 MOLECULE: REPLICATION FACTOR-A PROTEIN 1; . SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; . AUTHOR C.J.PARK,J.H.LEE,B.S.CHOI . 114 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7720.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 67 58.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 7 6.1 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 37 32.5 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 2 1.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 8 7.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 5 4.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 10 8.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 2 1 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 181 A T 0 0 97 0, 0.0 16,-0.1 0, 0.0 17,-0.1 0.000 360.0 360.0 360.0 95.6 6.0 -10.3 -11.2 2 182 A R - 0 0 104 14,-0.5 3,-0.1 1,-0.1 77,-0.1 -0.296 360.0-107.7 -63.9 151.5 9.0 -10.0 -8.8 3 183 A P - 0 0 75 0, 0.0 15,-1.1 0, 0.0 2,-0.2 -0.050 53.5 -63.7 -70.9 177.7 9.1 -12.3 -5.8 4 184 A I B -a 18 0A 82 13,-0.1 2,-0.3 15,-0.1 15,-0.2 -0.456 59.6-174.6 -67.9 131.3 8.4 -11.2 -2.2 5 185 A F - 0 0 75 13,-3.2 15,-0.3 -2,-0.2 5,-0.1 -0.889 31.1 -94.1-124.6 157.2 11.0 -8.7 -1.0 6 186 A A > - 0 0 32 -2,-0.3 3,-1.3 1,-0.1 4,-0.3 -0.268 41.9-107.7 -64.4 155.5 11.5 -7.0 2.5 7 187 A I G > S+ 0 0 1 1,-0.3 3,-2.1 2,-0.2 -1,-0.1 0.913 122.2 57.7 -52.9 -41.3 9.8 -3.6 2.9 8 188 A E G 3 S+ 0 0 133 1,-0.3 -1,-0.3 42,-0.0 -2,-0.1 0.833 98.8 61.0 -59.9 -29.1 13.3 -2.0 2.7 9 189 A Q G < S+ 0 0 110 -3,-1.3 -1,-0.3 2,-0.0 -2,-0.2 0.481 77.6 123.7 -78.4 1.3 13.7 -3.6 -0.7 10 190 A L < - 0 0 13 -3,-2.1 -4,-0.0 -4,-0.3 -3,-0.0 -0.293 42.8-167.2 -61.5 146.8 10.7 -1.7 -2.1 11 191 A S > - 0 0 43 1,-0.1 4,-0.9 72,-0.0 5,-0.3 -0.994 25.6-155.2-141.0 134.3 11.5 0.4 -5.1 12 192 A P T 4 S+ 0 0 66 0, 0.0 70,-0.3 0, 0.0 -1,-0.1 0.863 99.2 51.3 -74.2 -36.7 9.5 3.2 -6.9 13 193 A Y T 4 S+ 0 0 204 1,-0.2 -2,-0.0 2,-0.1 68,-0.0 0.897 100.3 62.5 -68.5 -39.0 11.2 2.6 -10.2 14 194 A Q T 4 S- 0 0 94 1,-0.1 -1,-0.2 68,-0.0 67,-0.0 0.919 74.6-174.6 -54.9 -41.5 10.6 -1.1 -10.2 15 195 A N < + 0 0 77 -4,-0.9 -1,-0.1 67,-0.1 66,-0.1 0.804 65.1 66.9 51.3 27.5 6.8 -0.5 -10.3 16 196 A V + 0 0 31 -5,-0.3 -14,-0.5 63,-0.1 2,-0.2 -0.375 62.9 116.6-176.2 89.2 6.3 -4.3 -9.9 17 197 A W - 0 0 6 63,-0.2 62,-1.4 -16,-0.1 2,-0.4 -0.808 49.6-115.1-144.0-174.5 7.3 -6.2 -6.8 18 198 A T E +aB 4 78A 9 -15,-1.1 -13,-3.2 -2,-0.2 2,-0.4 -0.991 24.8 177.3-134.3 138.0 5.7 -8.3 -4.0 19 199 A I E - B 0 77A 3 58,-2.8 58,-2.4 -2,-0.4 2,-0.4 -0.998 11.9-155.7-139.4 137.6 5.5 -7.7 -0.3 20 200 A K E + B 0 76A 107 -2,-0.4 2,-0.3 -15,-0.3 56,-0.2 -0.892 32.2 123.7-114.2 143.3 3.8 -9.8 2.5 21 201 A A E - B 0 75A 7 54,-2.1 54,-2.4 -2,-0.4 2,-0.2 -0.988 48.8 -98.6-176.8 176.1 2.5 -8.4 5.8 22 202 A R E -CB 47 74A 130 25,-2.0 25,-2.1 -2,-0.3 2,-0.3 -0.652 40.9 -97.8-109.3 168.4 -0.5 -8.0 8.2 23 203 A V E +C 46 0A 22 50,-1.4 23,-0.2 23,-0.3 49,-0.1 -0.634 35.9 171.2 -87.6 144.0 -2.8 -5.1 8.8 24 204 A S E + 0 0 69 21,-2.3 2,-0.4 1,-0.3 22,-0.2 0.739 66.4 2.9-114.6 -58.2 -2.3 -2.7 11.7 25 205 A Y E -C 45 0A 160 20,-1.2 20,-2.9 46,-0.0 2,-0.4 -0.994 62.0-143.9-136.4 136.8 -4.6 0.3 11.3 26 206 A K E -C 44 0A 95 -2,-0.4 18,-0.2 18,-0.2 45,-0.0 -0.827 11.2-168.3-100.3 133.4 -7.3 1.1 8.7 27 207 A G E - 0 0 33 16,-1.3 2,-0.3 -2,-0.4 17,-0.2 0.765 29.1-114.9 -83.9-103.1 -7.8 4.7 7.5 28 208 A E E -C 43 0A 111 15,-0.6 15,-1.5 2,-0.0 2,-0.5 -0.947 22.2 -81.2-174.6-165.7 -11.0 5.2 5.4 29 209 A I E +C 42 0A 84 -2,-0.3 13,-0.3 13,-0.2 2,-0.3 -0.921 47.2 161.3-126.3 110.7 -12.3 6.1 2.0 30 210 A K E -C 41 0A 115 11,-3.1 11,-2.6 -2,-0.5 2,-0.1 -0.836 37.7-104.6-123.3 162.2 -12.6 9.8 1.0 31 211 A T E -C 40 0A 107 -2,-0.3 2,-0.5 9,-0.3 9,-0.3 -0.461 22.0-144.7 -84.5 160.3 -12.9 11.6 -2.4 32 212 A W E -C 39 0A 65 7,-2.1 2,-1.6 -2,-0.1 7,-0.8 -0.928 2.4-156.2-126.9 108.9 -10.0 13.4 -4.2 33 213 A H E -C 38 0A 154 -2,-0.5 5,-0.2 5,-0.2 7,-0.0 -0.594 19.9-167.9 -85.2 86.6 -10.9 16.5 -6.2 34 214 A N - 0 0 91 -2,-1.6 3,-0.1 3,-1.3 -2,-0.0 -0.245 37.5-102.0 -68.3 162.4 -8.0 16.6 -8.7 35 215 A Q S S+ 0 0 148 1,-0.2 -1,-0.1 3,-0.0 3,-0.0 0.896 120.1 11.7 -55.0 -39.0 -7.5 19.8 -10.7 36 216 A R S S+ 0 0 202 1,-0.0 2,-0.3 0, 0.0 -1,-0.2 0.315 131.8 41.5-122.0 8.5 -9.1 18.1 -13.8 37 217 A G - 0 0 28 -3,-0.1 -3,-1.3 2,-0.0 2,-0.3 -0.963 55.7-165.8-148.8 166.8 -10.5 14.9 -12.2 38 218 A D E +C 33 0A 99 -2,-0.3 2,-0.3 -5,-0.2 -5,-0.2 -0.994 24.3 123.3-154.6 147.5 -12.4 13.6 -9.2 39 219 A G E -C 32 0A 22 -7,-0.8 -7,-2.1 -2,-0.3 2,-0.3 -0.941 55.5 -58.5-176.4-162.5 -13.3 10.2 -7.6 40 220 A K E +C 31 0A 71 -9,-0.3 2,-0.3 -2,-0.3 -9,-0.3 -0.717 43.7 178.2-103.5 154.8 -13.0 8.2 -4.4 41 221 A L E -C 30 0A 46 -11,-2.6 -11,-3.1 -2,-0.3 2,-0.3 -0.995 5.3-170.7-152.8 146.1 -9.7 7.3 -2.6 42 222 A F E -CD 29 57A 5 15,-2.7 15,-2.4 -2,-0.3 2,-0.4 -0.960 8.4-150.1-139.3 158.2 -8.8 5.4 0.6 43 223 A N E -CD 28 56A 59 -15,-1.5 -16,-1.3 -2,-0.3 -15,-0.6 -0.987 12.4-179.9-132.8 138.2 -5.7 4.7 2.8 44 224 A V E -CD 26 55A 2 11,-4.0 11,-2.2 -2,-0.4 2,-0.5 -0.968 20.1-135.8-134.2 150.3 -4.7 1.7 5.0 45 225 A N E -CD 25 54A 30 -20,-2.9 -21,-2.3 -2,-0.3 -20,-1.2 -0.905 17.2-166.6-109.9 126.9 -1.7 1.0 7.1 46 226 A F E -CD 23 53A 5 7,-1.4 7,-2.0 -2,-0.5 2,-0.4 -0.891 6.1-152.8-111.5 138.9 0.0 -2.4 7.1 47 227 A L E +CD 22 52A 65 -25,-2.1 -25,-2.0 -2,-0.4 2,-0.3 -0.875 16.1 175.0-110.9 141.9 2.6 -3.6 9.6 48 228 A D E > - D 0 51A 37 3,-1.8 3,-0.6 -2,-0.4 -27,-0.1 -0.990 41.5-119.0-142.6 151.4 5.3 -6.2 9.0 49 229 A T T 3 S+ 0 0 145 -2,-0.3 -1,-0.1 1,-0.2 3,-0.1 0.905 114.3 59.4 -57.1 -39.3 8.3 -7.6 11.0 50 230 A S T 3 S- 0 0 58 1,-0.2 2,-0.3 -3,-0.1 -1,-0.2 0.898 128.2 -61.2 -58.3 -37.7 10.7 -6.3 8.3 51 231 A G E < -D 48 0A 22 -3,-0.6 -3,-1.8 -44,-0.0 2,-0.4 -0.973 64.0 -62.9 177.7-166.1 9.4 -2.7 9.0 52 232 A E E +D 47 0A 68 41,-0.4 2,-0.3 42,-0.3 -5,-0.2 -0.883 49.6 169.5-108.8 136.0 6.3 -0.5 8.9 53 233 A I E -D 46 0A 11 -7,-2.0 -7,-1.4 -2,-0.4 2,-0.4 -0.935 21.1-145.7-139.4 163.6 4.5 0.3 5.6 54 234 A R E -De 45 97A 25 42,-1.4 44,-0.6 -2,-0.3 2,-0.4 -0.992 8.4-153.8-134.9 133.1 1.2 1.9 4.5 55 235 A A E +De 44 98A 8 -11,-2.2 -11,-4.0 -2,-0.4 2,-0.4 -0.865 13.6 179.9-107.8 139.1 -1.0 1.0 1.6 56 236 A T E -De 43 99A 21 42,-1.7 44,-2.1 -2,-0.4 2,-0.3 -0.990 3.4-170.9-135.6 143.0 -3.3 3.4 -0.2 57 237 A A E -De 42 100A 0 -15,-2.4 -15,-2.7 -2,-0.4 44,-0.2 -0.888 17.1-123.6-132.5 163.9 -5.7 2.9 -3.1 58 238 A F > - 0 0 42 42,-1.5 4,-0.8 -2,-0.3 5,-0.2 0.133 55.2 -48.2 -86.6-156.1 -7.8 5.1 -5.5 59 239 A N H >> S- 0 0 43 2,-0.2 3,-3.3 3,-0.1 4,-1.0 0.650 116.8 -10.4 -52.2-140.5 -11.6 4.9 -6.2 60 240 A D H 3> S+ 0 0 109 1,-0.3 4,-2.4 2,-0.2 5,-0.3 0.772 128.5 70.8 -34.6 -32.8 -13.3 1.5 -7.1 61 241 A F H 3> S+ 0 0 88 1,-0.2 4,-1.3 2,-0.2 -1,-0.3 0.920 101.2 44.4 -56.5 -38.7 -9.8 -0.0 -7.4 62 242 A A H - 0 0 132 -2,-0.3 4,-0.9 1,-0.1 -1,-0.1 -0.418 23.2-138.0 -70.8 148.2 10.1 10.6 4.9 87 267 A P T >4 S+ 0 0 63 0, 0.0 3,-0.7 0, 0.0 -1,-0.1 0.958 102.4 43.9 -72.6 -53.4 10.9 9.4 8.4 88 268 A Q T 34 S+ 0 0 177 1,-0.2 -2,-0.1 3,-0.0 5,-0.0 0.873 105.6 65.8 -61.5 -33.3 10.7 12.7 10.3 89 269 A F T 34 S+ 0 0 142 1,-0.1 2,-0.4 6,-0.1 -1,-0.2 0.898 109.1 38.1 -56.8 -39.0 7.5 13.5 8.3 90 270 A T S << S- 0 0 28 -4,-0.9 4,-0.1 -3,-0.7 -1,-0.1 -0.917 80.1-130.5-117.2 141.3 5.7 10.7 10.1 91 271 A N S S+ 0 0 163 -2,-0.4 -1,-0.1 2,-0.1 2,-0.1 0.836 90.0 86.2 -55.7 -30.0 6.1 9.6 13.7 92 272 A L S S- 0 0 74 1,-0.1 2,-0.3 -3,-0.0 -2,-0.3 -0.438 89.0-114.2 -72.7 146.1 6.6 6.0 12.5 93 273 A T S S+ 0 0 110 1,-0.2 -41,-0.4 -2,-0.1 -1,-0.1 -0.609 92.7 2.9 -82.2 138.5 10.1 5.1 11.5 94 274 A H S S- 0 0 103 -2,-0.3 -42,-0.3 1,-0.1 -1,-0.2 0.964 86.9-161.9 52.4 57.2 10.8 4.3 7.8 95 275 A P - 0 0 1 0, 0.0 -10,-2.0 0, 0.0 2,-0.4 -0.451 3.8-160.1 -70.5 138.2 7.2 5.1 6.8 96 276 A Y E - G 0 84A 13 -12,-0.2 -42,-1.4 -2,-0.2 2,-0.4 -0.968 4.5-157.6-124.6 136.8 6.2 3.8 3.4 97 277 A E E -eG 54 83A 61 -14,-3.0 -14,-2.5 -2,-0.4 2,-0.4 -0.886 5.9-164.3-112.6 141.8 3.3 5.0 1.2 98 278 A L E -eG 55 82A 8 -44,-0.6 -42,-1.7 -2,-0.4 2,-0.6 -0.977 5.3-157.7-128.0 129.3 1.7 2.8 -1.5 99 279 A N E -eG 56 81A 33 -18,-1.7 -18,-1.6 -2,-0.4 2,-0.4 -0.888 8.9-165.1-108.2 117.9 -0.6 4.1 -4.4 100 280 A L E +e 57 0A 7 -44,-2.1 -42,-1.5 -2,-0.6 -38,-0.1 -0.820 40.9 112.6-100.6 135.9 -3.0 1.5 -5.9 101 281 A D + 0 0 52 -2,-0.4 -1,-0.1 -44,-0.2 3,-0.1 0.243 61.8 57.9-164.1 -50.2 -4.7 2.3 -9.3 102 282 A R S S- 0 0 175 1,-0.2 2,-1.0 -23,-0.0 -1,-0.0 0.251 112.2 -46.7 -75.8-151.8 -3.5 0.2 -12.2 103 283 A D S S+ 0 0 135 -3,-0.1 2,-0.3 2,-0.0 -1,-0.2 -0.702 70.2 171.2 -86.4 105.9 -3.8 -3.6 -12.1 104 284 A T - 0 0 5 -2,-1.0 2,-0.5 -3,-0.1 -25,-0.2 -0.828 25.4-137.9-113.3 153.3 -2.5 -4.9 -8.8 105 285 A V E +F 78 0A 57 -27,-2.1 -27,-2.1 -2,-0.3 2,-0.3 -0.930 28.4 164.4-114.5 124.7 -2.6 -8.4 -7.3 106 286 A I E +F 77 0A 13 -2,-0.5 2,-0.3 -29,-0.2 -29,-0.2 -0.983 8.1 176.9-135.7 147.9 -3.5 -9.0 -3.6 107 287 A E E -F 76 0A 79 -31,-1.9 -31,-1.7 -2,-0.3 3,-0.1 -0.902 25.3-128.9-155.5 124.4 -4.6 -12.1 -1.7 108 288 A E E -F 75 0A 29 -2,-0.3 2,-0.8 -40,-0.3 -33,-0.2 -0.158 57.8 -69.8 -63.5 164.4 -5.4 -12.7 2.0 109 289 A C S S+ 0 0 81 -35,-1.5 2,-0.3 2,-0.0 -1,-0.2 -0.386 73.0 165.8 -60.2 102.5 -3.7 -15.6 3.7 110 290 A F - 0 0 110 -2,-0.8 2,-0.6 -3,-0.1 -3,-0.0 -0.821 44.1 -99.1-118.0 159.5 -5.4 -18.6 2.0 111 291 A D - 0 0 161 -2,-0.3 2,-0.4 2,-0.0 -2,-0.0 -0.648 41.6-166.4 -79.7 118.0 -4.5 -22.3 1.9 112 292 A E - 0 0 142 -2,-0.6 2,-0.4 0, 0.0 -1,-0.0 -0.843 3.3-158.6-106.5 141.6 -2.8 -23.1 -1.4 113 293 A S 0 0 110 -2,-0.4 -2,-0.0 1,-0.1 0, 0.0 -0.928 360.0 360.0-119.5 142.7 -2.2 -26.6 -2.7 114 294 A N 0 0 223 -2,-0.4 -1,-0.1 0, 0.0 0, 0.0 0.312 360.0 360.0-167.5 360.0 0.4 -27.8 -5.2