==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=20-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSCRIPTION/DNA 26-JAN-05 1YO5 . COMPND 2 MOLECULE: ENHANCER SITE OF PROSTATE SPECIFIC ANTIGEN . SOURCE 2 SYNTHETIC: YES; . AUTHOR Y.WANG,L.FENG,M.SAID,S.BALDERMAN,Z.FAYAZI,Y.LIU,D.GHOSH, . 88 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6008.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 60 68.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 13 14.8 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 3 3.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 9 10.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 31 35.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 3 3.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 0 0 0 0 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 247 C Q 0 0 143 0, 0.0 3,-0.1 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 123.1 4.2 -2.5 30.4 2 248 C P - 0 0 90 0, 0.0 47,-0.1 0, 0.0 2,-0.0 -0.292 360.0 -95.0 -62.9 150.9 1.3 -2.0 27.9 3 249 C I - 0 0 55 45,-0.2 2,-0.2 1,-0.1 3,-0.0 -0.376 43.7-122.4 -58.1 141.6 0.8 -4.6 25.1 4 250 C H > - 0 0 104 1,-0.1 4,-2.5 -3,-0.1 3,-0.2 -0.601 17.4-115.0 -89.5 156.5 2.5 -3.5 21.9 5 251 C L H > S+ 0 0 6 1,-0.2 4,-2.7 -2,-0.2 5,-0.2 0.889 114.3 52.5 -60.6 -43.4 0.5 -3.0 18.7 6 252 C W H > S+ 0 0 68 2,-0.2 4,-1.8 1,-0.2 -1,-0.2 0.875 112.5 46.1 -60.6 -36.9 2.3 -5.8 16.8 7 253 C Q H > S+ 0 0 66 -3,-0.2 4,-2.3 2,-0.2 -2,-0.2 0.885 110.8 52.8 -71.3 -43.0 1.5 -8.2 19.6 8 254 C F H X S+ 0 0 2 -4,-2.5 4,-1.9 2,-0.2 -2,-0.2 0.909 109.3 49.6 -55.8 -47.3 -2.1 -7.0 19.8 9 255 C L H X S+ 0 0 0 -4,-2.7 4,-1.9 2,-0.2 -2,-0.2 0.897 110.1 50.0 -61.6 -42.3 -2.4 -7.7 16.1 10 256 C K H X S+ 0 0 58 -4,-1.8 4,-1.4 1,-0.2 -2,-0.2 0.890 107.6 56.2 -61.7 -39.4 -1.0 -11.2 16.5 11 257 C E H X S+ 0 0 58 -4,-2.3 4,-0.7 1,-0.2 -2,-0.2 0.895 108.7 45.1 -56.4 -47.6 -3.5 -11.8 19.3 12 258 C L H >< S+ 0 0 1 -4,-1.9 3,-0.7 1,-0.2 7,-0.3 0.880 111.7 53.0 -65.9 -38.1 -6.5 -11.0 17.1 13 259 C L H 3< S+ 0 0 4 -4,-1.9 -1,-0.2 1,-0.2 12,-0.2 0.727 99.1 65.1 -69.6 -24.1 -5.0 -13.1 14.3 14 260 C L H 3< S+ 0 0 130 -4,-1.4 -1,-0.2 1,-0.2 -2,-0.2 0.778 104.8 45.0 -68.5 -29.4 -4.7 -16.1 16.7 15 261 C K XX + 0 0 109 -3,-0.7 4,-2.8 -4,-0.7 3,-0.9 -0.628 57.0 164.3-122.0 71.9 -8.5 -16.3 17.1 16 262 C P H 3> S+ 0 0 71 0, 0.0 4,-2.4 0, 0.0 5,-0.2 0.793 76.1 67.9 -55.6 -29.2 -10.3 -16.0 13.8 17 263 C H H 34 S+ 0 0 165 1,-0.2 4,-0.1 2,-0.2 -2,-0.1 0.910 115.6 27.0 -54.0 -43.8 -13.5 -17.4 15.5 18 264 C S H <4 S+ 0 0 57 -3,-0.9 -1,-0.2 -6,-0.1 3,-0.2 0.857 141.7 18.2 -82.9 -41.7 -13.6 -14.2 17.5 19 265 C Y H >X S+ 0 0 57 -4,-2.8 3,-2.2 -7,-0.3 4,-2.1 0.368 84.8 111.0-119.4 6.1 -11.9 -11.7 15.2 20 266 C G T 3< S+ 0 0 12 -4,-2.4 -1,-0.1 -5,-0.3 -3,-0.1 0.687 78.6 53.9 -64.0 -24.5 -11.9 -13.2 11.7 21 267 C R T 34 S+ 0 0 161 -5,-0.2 -1,-0.3 -3,-0.2 3,-0.1 0.565 116.0 41.7 -83.4 -8.3 -14.3 -10.8 10.1 22 268 C F T <4 S+ 0 0 50 -3,-2.2 15,-2.4 1,-0.4 14,-1.8 0.762 130.5 1.9-104.6 -36.5 -12.1 -7.9 11.3 23 269 C I E < +A 35 0A 1 -4,-2.1 -1,-0.4 12,-0.3 2,-0.3 -0.958 68.2 171.9-158.3 135.3 -8.6 -9.3 10.6 24 270 C R E -A 34 0A 108 10,-2.2 10,-3.0 -2,-0.3 2,-0.3 -0.977 36.5 -99.6-147.7 155.7 -7.3 -12.5 8.9 25 271 C W E -A 33 0A 72 -2,-0.3 8,-0.3 8,-0.2 3,-0.2 -0.604 25.9-179.6 -71.5 131.0 -4.2 -14.3 7.6 26 272 C L E S+ 0 0 69 6,-3.5 2,-0.4 -2,-0.3 7,-0.2 0.792 89.5 7.1 -89.3 -45.2 -3.9 -14.1 3.8 27 273 C N E >>S-A 32 0A 65 5,-2.2 5,-2.5 1,-0.1 4,-0.6 -0.884 73.7-171.8-138.0 97.7 -0.7 -16.2 3.9 28 274 C K T >45S+ 0 0 154 -2,-0.4 3,-0.8 1,-0.2 -1,-0.1 0.900 83.1 50.4 -63.2 -44.6 -0.1 -17.5 7.4 29 275 C E T 345S+ 0 0 157 1,-0.3 -1,-0.2 2,-0.1 -2,-0.0 0.861 114.0 44.5 -63.0 -40.6 3.4 -18.9 6.7 30 276 C K T 345S- 0 0 113 2,-0.1 -1,-0.3 58,-0.0 -2,-0.2 0.481 113.9-118.8 -83.4 -2.7 4.7 -15.7 5.1 31 277 C G T <<5 + 0 0 4 -3,-0.8 54,-2.5 -4,-0.6 2,-0.6 0.749 59.5 153.6 73.0 26.9 3.0 -13.6 7.9 32 278 C I E < +AB 27 84A 26 -5,-2.5 -6,-3.5 52,-0.2 -5,-2.2 -0.799 16.1 174.9 -96.9 117.4 0.7 -11.7 5.5 33 279 C F E -AB 25 83A 0 50,-2.4 50,-2.4 -2,-0.6 2,-0.4 -0.842 21.0-142.6-120.6 155.0 -2.5 -10.5 7.0 34 280 C K E -AB 24 82A 62 -10,-3.0 -10,-2.2 -2,-0.3 2,-0.8 -0.970 12.1-138.6-117.3 133.1 -5.4 -8.3 5.9 35 281 C I E +A 23 0A 0 46,-3.1 3,-0.3 -2,-0.4 -12,-0.3 -0.812 26.2 175.2 -84.3 113.8 -7.3 -5.8 7.9 36 282 C E S S+ 0 0 76 -14,-1.8 2,-0.4 -2,-0.8 -13,-0.2 0.773 75.0 30.5 -91.4 -33.5 -10.9 -6.5 6.9 37 283 C D > + 0 0 60 -15,-2.4 4,-2.4 1,-0.1 -1,-0.3 -0.807 67.3 177.2-130.3 88.6 -12.6 -4.1 9.2 38 284 C S H > S+ 0 0 38 -2,-0.4 4,-2.1 -3,-0.3 5,-0.2 0.854 81.2 51.7 -62.1 -41.6 -10.2 -1.2 9.9 39 285 C A H > S+ 0 0 67 2,-0.2 4,-2.2 1,-0.2 -1,-0.2 0.877 112.4 47.8 -62.6 -39.2 -12.7 0.8 12.1 40 286 C Q H > S+ 0 0 37 2,-0.2 4,-2.6 1,-0.2 -2,-0.2 0.896 110.1 49.5 -70.7 -44.6 -13.2 -2.3 14.2 41 287 C V H X S+ 0 0 0 -4,-2.4 4,-2.1 -19,-0.2 -2,-0.2 0.919 114.4 47.1 -58.9 -42.4 -9.5 -3.2 14.6 42 288 C A H X S+ 0 0 2 -4,-2.1 4,-2.5 2,-0.2 -2,-0.2 0.886 110.6 51.9 -66.4 -41.7 -8.9 0.5 15.6 43 289 C R H X S+ 0 0 125 -4,-2.2 4,-2.0 2,-0.2 -2,-0.2 0.933 111.3 46.9 -58.7 -47.9 -11.9 0.4 18.0 44 290 C L H X S+ 0 0 30 -4,-2.6 4,-2.1 2,-0.2 -2,-0.2 0.856 112.1 50.7 -63.1 -37.7 -10.5 -2.8 19.7 45 291 C W H X S+ 0 0 11 -4,-2.1 4,-2.1 2,-0.2 -1,-0.2 0.904 108.9 51.6 -66.7 -42.2 -7.0 -1.3 19.9 46 292 C G H X>S+ 0 0 4 -4,-2.5 5,-2.7 2,-0.2 4,-1.1 0.878 110.2 48.8 -60.2 -43.0 -8.4 1.9 21.5 47 293 C I H <5S+ 0 0 111 -4,-2.0 3,-0.4 3,-0.2 -2,-0.2 0.925 110.6 51.7 -60.0 -47.1 -10.3 -0.2 24.2 48 294 C R H <5S+ 0 0 98 -4,-2.1 -2,-0.2 1,-0.2 -1,-0.2 0.873 121.8 30.9 -58.4 -40.6 -7.1 -2.1 24.9 49 295 C K H <5S- 0 0 72 -4,-2.1 -1,-0.2 2,-0.1 -2,-0.2 0.500 108.7-117.3 -96.3 -4.0 -5.0 1.0 25.4 50 296 C N T <5S+ 0 0 133 -4,-1.1 -3,-0.2 -3,-0.4 -4,-0.1 0.947 70.7 134.8 55.5 51.7 -7.8 3.3 26.8 51 297 C R > < + 0 0 145 -5,-2.7 3,-2.1 -8,-0.1 -1,-0.2 -0.808 29.1 179.6-119.3 87.7 -7.6 5.7 23.9 52 298 C P T 3 S+ 0 0 122 0, 0.0 -5,-0.1 0, 0.0 -6,-0.1 0.685 80.0 60.3 -64.4 -16.1 -11.2 6.3 22.9 53 299 C A T 3 S+ 0 0 71 -7,-0.1 -10,-0.1 -3,-0.1 -7,-0.0 0.474 78.3 127.3 -86.8 -3.3 -10.2 8.7 20.1 54 300 C M < + 0 0 43 -3,-2.1 2,-0.3 -11,-0.1 -8,-0.1 -0.185 31.2 166.6 -55.7 140.5 -8.2 5.9 18.4 55 301 C N > - 0 0 65 1,-0.1 4,-2.4 -13,-0.0 5,-0.2 -0.890 50.6 -94.9-145.1 178.6 -8.9 5.4 14.7 56 302 C Y H > S+ 0 0 38 -2,-0.3 4,-3.1 1,-0.2 5,-0.3 0.883 118.5 61.3 -71.8 -36.4 -7.4 3.5 11.8 57 303 C D H > S+ 0 0 124 1,-0.2 4,-1.3 2,-0.2 -1,-0.2 0.932 114.4 36.6 -46.1 -51.3 -5.5 6.6 10.5 58 304 C K H > S+ 0 0 95 2,-0.2 4,-1.3 1,-0.2 -2,-0.2 0.832 115.1 52.8 -78.3 -35.9 -3.6 6.7 13.8 59 305 C L H X S+ 0 0 0 -4,-2.4 4,-1.5 2,-0.2 3,-0.4 0.948 111.6 47.8 -60.6 -47.1 -3.3 2.9 14.3 60 306 C S H X S+ 0 0 5 -4,-3.1 4,-2.4 1,-0.2 -2,-0.2 0.806 103.1 61.8 -67.5 -31.4 -1.8 2.6 10.8 61 307 C R H X S+ 0 0 113 -4,-1.3 4,-1.3 -5,-0.3 -1,-0.2 0.895 105.0 48.9 -57.8 -40.2 0.6 5.4 11.5 62 308 C S H X S+ 0 0 58 -4,-1.3 4,-0.6 -3,-0.4 -2,-0.2 0.863 107.3 54.2 -68.3 -35.7 2.0 3.2 14.3 63 309 C I H >< S+ 0 0 0 -4,-1.5 3,-1.7 1,-0.2 4,-0.3 0.943 105.4 54.7 -60.7 -44.5 2.3 0.3 11.9 64 310 C R H >< S+ 0 0 108 -4,-2.4 3,-1.6 1,-0.3 4,-0.5 0.836 98.1 61.9 -57.5 -36.5 4.4 2.5 9.6 65 311 C Q H 3< S+ 0 0 97 -4,-1.3 4,-0.4 1,-0.3 3,-0.3 0.715 96.5 63.0 -61.0 -22.1 6.8 3.3 12.4 66 312 C Y T S+ 0 0 32 -3,-1.7 5,-1.9 -4,-0.6 4,-0.9 0.644 82.4 79.4 -76.2 -18.7 7.5 -0.5 12.4 67 313 C Y T X45S+ 0 0 86 -3,-1.6 3,-0.5 -4,-0.3 -1,-0.2 0.899 97.3 40.6 -58.1 -46.9 8.9 -0.5 8.8 68 314 C K T 345S+ 0 0 178 -4,-0.5 -1,-0.2 -3,-0.3 -2,-0.2 0.698 111.9 57.8 -76.7 -18.0 12.3 0.9 9.8 69 315 C K T 345S- 0 0 136 -4,-0.4 -1,-0.2 -3,-0.2 -2,-0.2 0.615 108.1-125.7 -83.3 -14.9 12.4 -1.4 12.9 70 316 C G T <<5S+ 0 0 27 -4,-0.9 -3,-0.2 -3,-0.5 3,-0.1 0.853 80.1 111.4 71.8 36.0 12.0 -4.5 10.7 71 317 C I S - 0 0 101 3,-0.4 3,-1.6 -2,-0.1 2,-0.1 -0.992 35.8 -96.9-134.6 145.4 -1.9 -3.8 -1.3 80 326 C R T 3 S+ 0 0 218 -2,-0.3 3,-0.1 1,-0.3 -45,-0.0 -0.345 106.7 3.7 -62.6 131.6 -4.3 -1.6 0.8 81 327 C L T 3 S+ 0 0 46 1,-0.2 -46,-3.1 -47,-0.1 2,-0.5 0.457 105.3 116.9 71.6 4.0 -5.0 -3.0 4.3 82 328 C V E < +B 34 0A 1 -3,-1.6 -3,-0.4 -48,-0.2 2,-0.3 -0.893 37.2 165.6-105.5 128.8 -2.5 -5.8 3.7 83 329 C Y E -B 33 0A 12 -50,-2.4 -50,-2.4 -2,-0.5 2,-0.4 -0.890 22.5-139.5-137.3 167.9 0.6 -6.0 5.8 84 330 C Q E -BC 32 73A 20 -11,-2.6 -11,-2.8 -2,-0.3 2,-0.3 -0.988 12.0-133.5-139.7 127.1 3.4 -8.5 6.6 85 331 C F E - C 0 72A 7 -54,-2.5 -13,-0.2 -2,-0.4 -14,-0.1 -0.594 16.2-151.7 -69.6 135.3 5.2 -9.6 9.8 86 332 C V S S+ 0 0 61 -15,-2.4 -1,-0.1 -2,-0.3 -14,-0.1 0.899 75.1 32.0 -78.0 -43.1 8.9 -9.7 9.0 87 333 C H 0 0 132 -16,-0.5 -2,-0.1 1,-0.1 -16,-0.0 0.012 360.0 360.0 -99.8-156.9 9.8 -12.4 11.6 88 334 C P 0 0 148 0, 0.0 -57,-0.1 0, 0.0 -1,-0.1 0.429 360.0 360.0 -18.8 360.0 7.9 -15.5 13.2