==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=6-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSCRIPTION 30-MAR-07 2YQI . COMPND 2 MOLECULE: HIGH MOBILITY GROUP PROTEIN B3; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR X.R.QIN,F.HAYAHSI,S.YOKOYAMA,RIKEN STRUCTURAL . 81 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6688.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 57 70.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 3 3.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 10 12.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 44 54.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 133 0, 0.0 2,-0.3 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 177.7 0.5 5.1 20.8 2 2 A S - 0 0 129 0, 0.0 2,-0.8 0, 0.0 0, 0.0 -0.947 360.0-135.1-126.8 146.7 0.9 3.0 17.6 3 3 A S + 0 0 119 -2,-0.3 2,-0.1 9,-0.0 9,-0.1 -0.832 47.4 137.4-103.7 99.3 -1.0 -0.0 16.4 4 4 A G - 0 0 57 -2,-0.8 8,-0.4 7,-0.1 2,-0.3 0.038 41.6-114.4-112.8-139.0 1.4 -2.7 15.1 5 5 A S - 0 0 70 6,-0.1 6,-0.1 -2,-0.1 -2,-0.0 -0.948 15.3-119.5-167.9 146.7 1.7 -6.5 15.4 6 6 A S - 0 0 95 -2,-0.3 0, 0.0 4,-0.2 0, 0.0 -0.121 36.1-101.6 -80.2-178.4 3.9 -9.1 16.8 7 7 A G S S+ 0 0 80 1,-0.1 4,-0.1 3,-0.0 -1,-0.1 0.995 115.0 34.3 -69.3 -65.8 5.8 -11.9 15.0 8 8 A N S S+ 0 0 157 2,-0.1 -1,-0.1 69,-0.0 69,-0.0 0.979 108.2 71.6 -53.0 -67.8 3.6 -14.9 15.6 9 9 A A S S- 0 0 23 1,-0.1 65,-0.1 68,-0.0 2,-0.0 -0.143 96.0-103.0 -52.0 144.0 0.2 -13.1 15.6 10 10 A P - 0 0 21 0, 0.0 -4,-0.2 0, 0.0 2,-0.1 -0.301 38.4 -98.5 -69.8 153.8 -0.9 -11.8 12.1 11 11 A K - 0 0 152 -6,-0.1 -6,-0.1 1,-0.1 -7,-0.1 -0.456 41.9-103.9 -74.3 144.8 -0.6 -8.1 11.1 12 12 A R - 0 0 155 -8,-0.4 -1,-0.1 -2,-0.1 55,-0.1 -0.386 39.9-105.0 -69.5 144.0 -3.7 -5.9 11.4 13 13 A P - 0 0 38 0, 0.0 -1,-0.1 0, 0.0 50,-0.1 -0.338 37.3-105.3 -69.7 148.8 -5.5 -5.0 8.2 14 14 A P - 0 0 32 0, 0.0 2,-0.3 0, 0.0 52,-0.1 -0.189 30.4-121.8 -69.8 164.7 -5.2 -1.5 6.7 15 15 A S >> - 0 0 62 1,-0.1 4,-1.7 51,-0.0 3,-1.6 -0.858 27.0-106.0-112.7 146.5 -7.9 1.1 6.8 16 16 A G H 3> S+ 0 0 7 -2,-0.3 4,-0.9 1,-0.3 44,-0.1 0.760 124.8 54.3 -36.2 -31.0 -9.6 2.9 3.9 17 17 A F H 3> S+ 0 0 74 2,-0.2 4,-1.5 3,-0.1 -1,-0.3 0.908 111.8 41.2 -73.2 -43.8 -7.5 5.8 5.0 18 18 A F H X> S+ 0 0 93 -3,-1.6 4,-2.9 2,-0.2 3,-0.6 0.981 106.5 59.8 -67.7 -59.2 -4.2 3.9 4.9 19 19 A L H 3X S+ 0 0 36 -4,-1.7 4,-1.0 1,-0.3 -1,-0.2 0.819 111.8 44.3 -37.8 -39.4 -4.9 2.0 1.6 20 20 A F H 3X S+ 0 0 2 -4,-0.9 4,-1.8 -5,-0.4 -1,-0.3 0.873 111.0 52.5 -75.9 -39.0 -5.2 5.4 0.0 21 21 A C H S+ 0 0 66 0, 0.0 4,-1.0 0, 0.0 -1,-0.2 0.901 106.2 45.6 -48.0 -49.8 4.3 7.0 -4.5 27 27 A K H >> S+ 0 0 114 -4,-0.3 4,-2.0 2,-0.2 3,-1.3 0.973 111.8 49.7 -60.4 -57.6 3.3 10.3 -6.1 28 28 A I H 3X S+ 0 0 8 -4,-1.8 4,-2.9 1,-0.3 3,-0.2 0.889 114.0 46.5 -48.8 -44.6 4.3 12.4 -3.1 29 29 A K H 3< S+ 0 0 135 -4,-2.9 5,-0.4 1,-0.2 -1,-0.3 0.701 116.3 46.0 -72.1 -19.3 7.7 10.6 -3.0 30 30 A S H << S+ 0 0 106 -3,-1.3 -2,-0.2 -4,-1.0 -1,-0.2 0.581 117.8 42.6 -97.0 -14.2 7.9 11.2 -6.8 31 31 A T H < S+ 0 0 103 -4,-2.0 -2,-0.2 -3,-0.2 -3,-0.2 0.820 109.6 57.1 -97.8 -42.3 6.8 14.8 -6.6 32 32 A N S >< S- 0 0 46 -4,-2.9 3,-0.8 -5,-0.3 2,-0.7 -0.784 89.8-115.6 -97.0 134.0 8.8 16.0 -3.6 33 33 A P T 3 S- 0 0 128 0, 0.0 -3,-0.1 0, 0.0 -4,-0.1 -0.535 88.4 -28.6 -69.8 108.9 12.6 15.7 -3.6 34 34 A G T 3 S- 0 0 77 -2,-0.7 2,-0.2 -5,-0.4 -5,-0.1 0.936 84.6-158.9 47.0 59.0 13.5 13.2 -0.8 35 35 A I < - 0 0 19 -3,-0.8 -1,-0.2 -7,-0.1 2,-0.1 -0.502 16.5-116.9 -71.6 132.2 10.5 14.1 1.3 36 36 A S >> - 0 0 77 -2,-0.2 3,-1.9 1,-0.1 4,-1.8 -0.447 21.0-117.5 -70.6 139.1 10.8 13.3 5.0 37 37 A I H 3> S+ 0 0 124 1,-0.3 4,-2.0 2,-0.2 5,-0.1 0.843 117.2 58.2 -42.3 -40.6 8.4 10.7 6.3 38 38 A G H 3> S+ 0 0 54 1,-0.2 4,-1.6 2,-0.2 -1,-0.3 0.867 105.6 48.7 -60.4 -37.5 7.1 13.4 8.6 39 39 A D H <> S+ 0 0 100 -3,-1.9 4,-1.9 2,-0.2 -2,-0.2 0.955 109.4 50.0 -67.5 -52.0 6.2 15.6 5.7 40 40 A V H X S+ 0 0 4 -4,-1.8 4,-2.9 1,-0.2 -2,-0.2 0.862 108.7 55.5 -54.9 -37.9 4.4 12.8 3.7 41 41 A A H X S+ 0 0 55 -4,-2.0 4,-2.3 -5,-0.3 5,-0.2 0.933 105.1 50.5 -61.5 -48.1 2.4 12.1 6.8 42 42 A K H X S+ 0 0 170 -4,-1.6 4,-1.1 1,-0.2 -1,-0.2 0.873 114.5 46.0 -58.4 -38.5 1.2 15.7 7.2 43 43 A K H >X S+ 0 0 91 -4,-1.9 4,-2.9 2,-0.2 3,-0.6 0.979 111.7 48.6 -68.8 -58.5 0.1 15.6 3.5 44 44 A L H 3X S+ 0 0 12 -4,-2.9 4,-2.8 1,-0.3 5,-0.2 0.944 106.7 55.9 -46.0 -62.5 -1.7 12.2 3.5 45 45 A G H 3X S+ 0 0 33 -4,-2.3 4,-1.5 1,-0.2 -1,-0.3 0.844 114.1 41.9 -39.4 -44.6 -3.7 13.0 6.7 46 46 A E H > - 0 0 82 1,-0.1 4,-2.3 0, 0.0 3,-1.5 -0.674 23.4-105.2-104.8 160.5 -15.5 12.9 -0.1 53 53 A D H 3> S+ 0 0 128 1,-0.3 4,-0.5 -2,-0.2 -1,-0.1 0.727 126.1 51.8 -53.8 -21.0 -17.7 10.2 1.4 54 54 A S H 34 S+ 0 0 80 2,-0.2 -1,-0.3 1,-0.1 -3,-0.0 0.724 107.3 50.7 -87.9 -25.0 -18.1 9.0 -2.2 55 55 A E H <4 S+ 0 0 107 -3,-1.5 -2,-0.2 1,-0.2 4,-0.2 0.842 112.1 45.6 -80.3 -36.1 -14.4 8.9 -2.8 56 56 A K H >X S+ 0 0 31 -4,-2.3 4,-2.6 1,-0.2 3,-1.5 0.705 92.9 84.2 -78.9 -20.9 -13.6 6.8 0.4 57 57 A Q H 3X S+ 0 0 118 -4,-0.5 4,-2.0 -5,-0.3 3,-0.5 0.931 95.8 40.0 -44.6 -58.3 -16.5 4.5 -0.4 58 58 A P H 34 S+ 0 0 83 0, 0.0 4,-0.4 0, 0.0 -1,-0.3 0.580 116.5 54.2 -69.7 -9.2 -14.4 2.4 -2.8 59 59 A Y H <> S+ 0 0 43 -3,-1.5 4,-0.6 -4,-0.2 -2,-0.2 0.720 108.8 45.4 -95.4 -27.1 -11.5 2.8 -0.3 60 60 A I H X S+ 0 0 92 -4,-2.6 4,-1.2 -3,-0.5 3,-0.4 0.856 107.1 57.1 -83.4 -38.9 -13.4 1.5 2.8 61 61 A T H X S+ 0 0 81 -4,-2.0 4,-1.0 -5,-0.3 3,-0.2 0.859 101.6 58.1 -60.4 -36.4 -14.9 -1.5 1.0 62 62 A K H > S+ 0 0 117 -4,-0.4 4,-0.8 1,-0.2 3,-0.4 0.865 104.2 51.2 -62.2 -36.9 -11.5 -2.7 0.1 63 63 A A H X S+ 0 0 16 -4,-0.6 4,-1.1 -3,-0.4 -1,-0.2 0.792 98.9 66.3 -70.8 -28.5 -10.5 -2.8 3.8 64 64 A A H X S+ 0 0 57 -4,-1.2 4,-1.2 1,-0.2 3,-0.3 0.863 100.2 49.8 -60.7 -37.1 -13.7 -4.8 4.6 65 65 A K H X S+ 0 0 124 -4,-1.0 4,-0.9 -3,-0.4 -1,-0.2 0.804 106.2 56.0 -71.9 -29.9 -12.2 -7.8 2.6 66 66 A L H X S+ 0 0 55 -4,-0.8 4,-0.9 1,-0.2 -1,-0.2 0.721 104.6 54.2 -74.1 -21.4 -8.9 -7.5 4.5 67 67 A K H X S+ 0 0 126 -4,-1.1 4,-2.4 -3,-0.3 5,-0.2 0.832 102.9 54.6 -80.4 -34.7 -10.8 -7.9 7.8 68 68 A E H X S+ 0 0 107 -4,-1.2 4,-0.7 1,-0.2 -2,-0.2 0.765 111.9 45.6 -69.6 -25.4 -12.5 -11.1 6.7 69 69 A K H X S+ 0 0 143 -4,-0.9 4,-1.0 2,-0.1 -1,-0.2 0.725 114.1 48.8 -88.3 -25.1 -9.1 -12.6 5.9 70 70 A Y H >X S+ 0 0 43 -4,-0.9 4,-3.0 2,-0.2 3,-0.5 0.955 103.8 56.0 -78.4 -55.4 -7.6 -11.3 9.2 71 71 A E H 3X S+ 0 0 121 -4,-2.4 4,-2.7 1,-0.3 5,-0.2 0.882 106.3 54.0 -43.4 -47.3 -10.2 -12.5 11.6 72 72 A K H 3X S+ 0 0 138 -4,-0.7 4,-1.7 1,-0.2 -1,-0.3 0.922 112.5 42.3 -55.5 -47.6 -9.8 -16.0 10.3 73 73 A D H < S+ 0 0 32 -4,-2.7 3,-0.6 -5,-0.2 5,-0.3 0.989 109.3 47.8 -61.6 -63.2 -8.9 -17.0 15.5 76 76 A D H 3< S+ 0 0 126 -4,-1.7 -1,-0.2 1,-0.2 -2,-0.2 0.889 104.8 63.4 -44.7 -47.7 -6.6 -19.9 14.6 77 77 A Y H 3< S+ 0 0 139 -4,-1.8 -1,-0.2 -5,-0.2 -2,-0.2 0.917 100.3 58.0 -43.6 -56.5 -3.7 -18.1 16.4 78 78 A K S << S- 0 0 124 -4,-1.4 2,-1.1 -3,-0.6 3,-0.2 -0.511 87.3-127.9 -79.7 146.7 -5.5 -18.3 19.7 79 79 A S + 0 0 107 1,-0.2 -3,-0.1 -2,-0.2 -2,-0.1 -0.705 47.5 148.9 -97.5 84.4 -6.5 -21.6 21.2 80 80 A K 0 0 146 -2,-1.1 -1,-0.2 -5,-0.3 -4,-0.1 0.957 360.0 360.0 -79.0 -56.6 -10.2 -21.2 22.0 81 81 A G 0 0 121 -3,-0.2 -1,-0.2 0, 0.0 -3,-0.0 -0.879 360.0 360.0-160.3 360.0 -11.4 -24.7 21.4