==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=20-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA BINDING PROTEIN 08-FEB-05 1YSE . COMPND 2 MOLECULE: DNA-BINDING PROTEIN SATB1; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR K.YAMASAKI,H.YAMAGUCHI . 88 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7217.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 58 65.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 6 6.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 8 9.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 43 48.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 2 1 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 368 A N 0 0 210 0, 0.0 4,-0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 -62.0 -16.0 5.2 -12.6 2 369 A T + 0 0 136 2,-0.0 2,-0.2 0, 0.0 0, 0.0 -0.010 360.0 99.2-146.0 31.0 -12.3 6.3 -12.6 3 370 A E S S- 0 0 149 1,-0.0 2,-1.0 0, 0.0 0, 0.0 -0.593 85.8 -76.5-114.0 176.9 -11.9 8.0 -9.3 4 371 A V + 0 0 35 -2,-0.2 45,-0.2 2,-0.1 2,-0.1 -0.642 60.3 174.0 -78.9 101.6 -10.5 7.1 -5.9 5 372 A S > - 0 0 47 -2,-1.0 3,-1.6 42,-0.1 4,-0.2 -0.396 50.8 -91.7-100.0 179.4 -13.2 5.0 -4.2 6 373 A S T >> S+ 0 0 71 1,-0.3 3,-1.6 2,-0.2 4,-1.5 0.706 111.0 86.9 -63.9 -19.4 -13.3 3.0 -1.0 7 374 A E H 3> S+ 0 0 100 1,-0.3 4,-2.7 2,-0.2 -1,-0.3 0.776 75.2 70.8 -51.7 -27.1 -12.1 0.0 -3.0 8 375 A I H <> S+ 0 0 1 -3,-1.6 4,-1.4 1,-0.2 -1,-0.3 0.905 101.6 41.7 -57.7 -43.6 -8.6 1.3 -2.3 9 376 A Y H <> S+ 0 0 12 -3,-1.6 4,-1.4 -4,-0.2 -1,-0.2 0.873 114.8 50.9 -72.1 -38.2 -8.9 0.4 1.4 10 377 A Q H X S+ 0 0 93 -4,-1.5 4,-1.8 1,-0.2 -2,-0.2 0.833 106.2 56.5 -68.1 -32.9 -10.6 -3.0 0.6 11 378 A W H X S+ 0 0 72 -4,-2.7 4,-3.4 -5,-0.2 5,-0.3 0.913 103.1 53.4 -65.1 -43.9 -7.8 -3.8 -1.9 12 379 A V H X S+ 0 0 3 -4,-1.4 4,-2.0 1,-0.2 -1,-0.2 0.889 110.3 47.6 -58.5 -41.1 -5.1 -3.4 0.7 13 380 A R H X S+ 0 0 148 -4,-1.4 4,-1.5 2,-0.2 -1,-0.2 0.868 115.9 44.3 -68.6 -37.2 -6.9 -5.9 3.0 14 381 A D H X S+ 0 0 83 -4,-1.8 4,-2.3 2,-0.2 -2,-0.2 0.877 114.0 49.2 -74.6 -39.4 -7.4 -8.3 0.1 15 382 A E H X S+ 0 0 39 -4,-3.4 4,-2.7 2,-0.2 5,-0.5 0.862 112.2 48.8 -67.7 -36.7 -3.8 -7.9 -1.2 16 383 A L H X>S+ 0 0 16 -4,-2.0 4,-1.4 -5,-0.3 5,-0.7 0.867 116.0 42.4 -71.1 -37.4 -2.4 -8.4 2.3 17 384 A K H <5S+ 0 0 174 -4,-1.5 -2,-0.2 -5,-0.2 -1,-0.2 0.809 119.9 44.1 -78.1 -31.4 -4.5 -11.5 2.9 18 385 A R H <5S+ 0 0 201 -4,-2.3 -2,-0.2 -5,-0.1 -3,-0.2 0.950 122.2 34.9 -77.2 -53.5 -3.8 -12.9 -0.6 19 386 A A H <5S- 0 0 54 -4,-2.7 -3,-0.2 -5,-0.2 -2,-0.2 0.930 97.7-141.2 -67.4 -47.1 -0.1 -12.2 -0.8 20 387 A G T <5 + 0 0 58 -4,-1.4 2,-0.3 -5,-0.5 -3,-0.2 0.962 46.1 136.3 82.5 61.0 0.5 -12.9 2.9 21 388 A I < - 0 0 51 -5,-0.7 -1,-0.2 -6,-0.1 2,-0.1 -0.878 55.1 -91.2-134.5 166.2 3.0 -10.3 4.0 22 389 A S >> - 0 0 80 -2,-0.3 4,-1.9 1,-0.1 3,-0.6 -0.356 32.8-118.4 -75.5 157.3 3.7 -7.9 6.9 23 390 A Q H 3> S+ 0 0 69 1,-0.2 4,-2.4 2,-0.2 5,-0.2 0.822 112.9 64.3 -64.1 -31.4 2.3 -4.3 6.9 24 391 A A H 3> S+ 0 0 21 2,-0.2 4,-1.0 1,-0.2 -1,-0.2 0.854 107.0 42.4 -60.6 -36.0 5.9 -3.1 7.1 25 392 A V H <> S+ 0 0 17 -3,-0.6 4,-2.4 2,-0.2 3,-0.5 0.966 116.7 43.5 -75.3 -56.6 6.6 -4.6 3.6 26 393 A F H X S+ 0 0 1 -4,-1.9 4,-1.7 1,-0.3 5,-0.2 0.810 116.0 51.5 -59.1 -30.5 3.3 -3.6 1.9 27 394 A A H X S+ 0 0 10 -4,-2.4 4,-1.5 -5,-0.2 -1,-0.3 0.797 111.4 46.1 -76.8 -29.9 3.7 -0.1 3.5 28 395 A R H < S+ 0 0 151 -4,-1.0 4,-0.5 -3,-0.5 -2,-0.2 0.799 119.8 39.4 -81.5 -31.1 7.3 0.2 2.2 29 396 A V H < S+ 0 0 35 -4,-2.4 -2,-0.2 2,-0.2 -3,-0.2 0.745 120.2 45.6 -88.5 -27.1 6.5 -0.9 -1.3 30 397 A A H < S- 0 0 9 -4,-1.7 -3,-0.2 -5,-0.3 2,-0.2 0.940 138.4 -11.6 -80.4 -52.4 3.1 0.9 -1.4 31 398 A F < - 0 0 12 -4,-1.5 3,-0.4 -5,-0.2 2,-0.2 -0.636 68.1-146.9-154.9 89.3 4.2 4.3 -0.0 32 399 A N + 0 0 118 -4,-0.5 -4,-0.1 1,-0.2 -3,-0.0 -0.399 60.4 99.3 -60.6 120.3 7.6 4.6 1.6 33 400 A R S S- 0 0 129 -2,-0.2 2,-0.3 -6,-0.1 -1,-0.2 0.084 83.5 -23.6-161.9 -72.1 7.3 7.1 4.4 34 401 A T > - 0 0 99 -3,-0.4 3,-1.3 -7,-0.1 4,-0.4 -0.889 57.6-114.8-164.3 130.0 7.0 5.9 8.0 35 402 A Q T 3 S+ 0 0 120 -2,-0.3 -11,-0.1 1,-0.2 -3,-0.0 -0.251 97.5 38.1 -63.5 151.4 5.7 2.7 9.6 36 403 A G T 3> S+ 0 0 38 -13,-0.0 4,-1.1 1,-0.0 3,-0.3 0.020 91.2 91.2 96.5 -28.0 2.5 2.9 11.7 37 404 A L H <> S+ 0 0 54 -3,-1.3 4,-2.3 1,-0.2 3,-0.3 0.885 79.1 59.6 -66.5 -39.8 0.9 5.4 9.4 38 405 A L H > S+ 0 0 4 -4,-0.4 4,-1.8 1,-0.2 -1,-0.2 0.803 101.4 57.0 -58.7 -29.5 -0.8 2.7 7.4 39 406 A S H > S+ 0 0 53 -3,-0.3 4,-2.1 2,-0.2 -1,-0.2 0.907 108.5 44.1 -68.9 -43.0 -2.5 1.6 10.6 40 407 A E H X S+ 0 0 135 -4,-1.1 4,-2.0 -3,-0.3 5,-0.3 0.869 114.2 50.3 -69.7 -37.5 -4.1 5.0 11.2 41 408 A I H X S+ 0 0 13 -4,-2.3 4,-1.5 1,-0.2 5,-0.3 0.840 115.7 42.5 -69.4 -34.1 -5.1 5.3 7.5 42 409 A L H < S+ 0 0 23 -4,-1.8 -2,-0.2 -5,-0.2 -1,-0.2 0.806 111.7 55.2 -81.6 -31.8 -6.7 1.8 7.6 43 410 A R H < S+ 0 0 213 -4,-2.1 -2,-0.2 -5,-0.2 -3,-0.2 0.940 114.2 38.6 -66.3 -48.7 -8.3 2.4 11.0 44 411 A K H < S- 0 0 164 -4,-2.0 -2,-0.2 -5,-0.1 -1,-0.2 0.934 81.3-167.8 -67.9 -47.6 -10.1 5.5 9.9 45 412 A E < + 0 0 119 -4,-1.5 -3,-0.1 -5,-0.3 2,-0.1 0.807 19.1 178.7 61.2 30.0 -11.0 4.3 6.4 46 413 A E - 0 0 81 -5,-0.3 -1,-0.2 1,-0.1 5,-0.1 -0.410 29.0-116.0 -66.6 136.4 -12.0 7.8 5.5 47 414 A D > - 0 0 69 1,-0.1 3,-1.8 -3,-0.1 -1,-0.1 -0.462 18.5-119.3 -74.2 144.3 -13.1 8.3 1.9 48 415 A P G > S+ 0 0 15 0, 0.0 3,-1.2 0, 0.0 -1,-0.1 0.774 111.1 70.9 -52.7 -27.3 -11.0 10.5 -0.4 49 416 A K G 3 S+ 0 0 145 1,-0.3 -44,-0.0 -45,-0.2 -3,-0.0 0.869 115.8 21.4 -58.6 -38.1 -14.1 12.7 -0.7 50 417 A T G < S+ 0 0 109 -3,-1.8 -1,-0.3 2,-0.0 2,-0.2 -0.059 105.8 112.9-120.7 30.6 -13.7 13.8 2.9 51 418 A A < - 0 0 23 -3,-1.2 2,-0.1 1,-0.1 -4,-0.0 -0.546 65.7-106.5-100.1 167.4 -10.0 13.1 3.3 52 419 A S > - 0 0 85 -2,-0.2 4,-2.2 1,-0.1 5,-0.1 -0.275 33.1-102.4 -85.4 175.0 -7.1 15.4 3.8 53 420 A Q H > S+ 0 0 165 1,-0.2 4,-1.8 2,-0.2 5,-0.2 0.951 123.0 48.4 -62.7 -51.3 -4.4 16.3 1.2 54 421 A S H > S+ 0 0 85 1,-0.2 4,-1.1 2,-0.2 -1,-0.2 0.815 111.7 52.8 -59.3 -30.8 -1.8 14.0 2.8 55 422 A L H > S+ 0 0 29 2,-0.2 4,-2.0 1,-0.2 5,-0.2 0.913 104.5 53.2 -71.4 -44.2 -4.4 11.3 2.8 56 423 A L H X S+ 0 0 73 -4,-2.2 4,-1.7 1,-0.2 -2,-0.2 0.859 108.2 51.7 -59.2 -37.0 -5.2 11.7 -0.9 57 424 A V H X S+ 0 0 71 -4,-1.8 4,-1.6 2,-0.2 -1,-0.2 0.832 106.6 54.3 -69.5 -33.1 -1.6 11.3 -1.7 58 425 A N H X S+ 0 0 3 -4,-1.1 4,-1.8 -3,-0.2 -2,-0.2 0.937 111.8 41.9 -66.5 -48.2 -1.3 8.1 0.3 59 426 A L H X S+ 0 0 1 -4,-2.0 4,-1.9 1,-0.2 -2,-0.2 0.831 109.2 61.1 -68.2 -32.7 -4.2 6.4 -1.5 60 427 A R H X S+ 0 0 170 -4,-1.7 4,-1.6 -5,-0.2 -1,-0.2 0.908 108.4 42.2 -60.6 -43.6 -2.9 7.6 -4.8 61 428 A A H X S+ 0 0 36 -4,-1.6 4,-1.8 1,-0.2 -1,-0.2 0.887 111.9 54.1 -70.9 -40.2 0.3 5.8 -4.4 62 429 A M H X S+ 0 0 7 -4,-1.8 4,-1.5 1,-0.2 -1,-0.2 0.821 107.5 52.8 -63.4 -31.4 -1.4 2.6 -3.1 63 430 A Q H X S+ 0 0 28 -4,-1.9 4,-2.3 2,-0.2 -1,-0.2 0.928 106.5 50.2 -70.2 -46.7 -3.6 2.6 -6.2 64 431 A N H X S+ 0 0 92 -4,-1.6 4,-1.4 1,-0.2 -2,-0.2 0.856 110.7 51.3 -60.2 -35.9 -0.7 2.8 -8.6 65 432 A F H < S+ 0 0 9 -4,-1.8 -1,-0.2 2,-0.2 -2,-0.2 0.874 111.8 45.9 -69.4 -38.1 1.0 -0.1 -6.8 66 433 A L H < S+ 0 0 20 -4,-1.5 -2,-0.2 1,-0.2 -1,-0.2 0.818 110.9 53.3 -73.9 -31.7 -2.2 -2.2 -7.0 67 434 A Q H < S+ 0 0 142 -4,-2.3 -1,-0.2 -5,-0.1 -2,-0.2 0.798 91.7 95.7 -72.7 -29.6 -2.7 -1.4 -10.7 68 435 A L S < S- 0 0 75 -4,-1.4 -3,-0.0 -5,-0.2 2,-0.0 -0.109 90.5 -85.8 -58.3 159.9 0.9 -2.5 -11.5 69 436 A P >> - 0 0 77 0, 0.0 4,-1.7 0, 0.0 3,-0.6 -0.314 27.8-123.4 -68.9 151.8 1.5 -6.1 -12.8 70 437 A E H 3> S+ 0 0 126 1,-0.2 4,-2.4 2,-0.2 5,-0.2 0.817 109.8 65.8 -64.1 -31.0 1.9 -9.0 -10.3 71 438 A A H 3> S+ 0 0 62 1,-0.2 4,-1.2 2,-0.2 -1,-0.2 0.875 104.1 44.8 -58.8 -38.8 5.2 -9.7 -12.0 72 439 A E H <> S+ 0 0 98 -3,-0.6 4,-1.8 2,-0.2 3,-0.3 0.934 112.1 49.9 -71.5 -48.1 6.6 -6.4 -10.7 73 440 A R H X S+ 0 0 34 -4,-1.7 4,-3.0 1,-0.2 5,-0.2 0.841 107.3 57.2 -59.5 -34.1 5.2 -6.8 -7.2 74 441 A D H X S+ 0 0 57 -4,-2.4 4,-1.9 1,-0.2 -1,-0.2 0.895 106.3 48.0 -64.6 -41.1 6.7 -10.2 -7.0 75 442 A R H X S+ 0 0 146 -4,-1.2 4,-1.9 -3,-0.3 -1,-0.2 0.838 116.0 44.7 -68.6 -33.6 10.2 -8.9 -7.7 76 443 A I H < S+ 0 0 61 -4,-1.8 -2,-0.2 2,-0.2 -1,-0.2 0.881 112.6 49.9 -77.5 -40.6 9.7 -6.2 -5.0 77 444 A Y H < S+ 0 0 37 -4,-3.0 -2,-0.2 -5,-0.2 -3,-0.2 0.853 116.9 42.7 -66.2 -35.3 8.2 -8.5 -2.4 78 445 A Q H < S+ 0 0 134 -4,-1.9 2,-0.6 -5,-0.2 3,-0.4 0.980 98.4 73.9 -74.4 -61.4 11.0 -11.0 -2.9 79 446 A D < + 0 0 115 -4,-1.9 -1,-0.1 -5,-0.2 3,-0.1 -0.398 57.0 122.6 -59.2 104.5 14.0 -8.6 -3.0 80 447 A E + 0 0 124 -2,-0.6 2,-1.4 1,-0.0 3,-0.3 0.579 60.0 58.2-131.1 -46.5 14.3 -7.6 0.6 81 448 A R > + 0 0 168 -3,-0.4 3,-0.8 1,-0.2 -2,-0.0 -0.480 57.9 153.1 -91.0 64.6 17.9 -8.4 1.8 82 449 A E T 3 S+ 0 0 172 -2,-1.4 2,-1.0 1,-0.3 -1,-0.2 0.888 71.6 55.2 -59.3 -40.7 19.7 -6.4 -0.9 83 450 A R T 3 S+ 0 0 225 -3,-0.3 2,-0.6 2,-0.0 -1,-0.3 -0.331 79.7 179.5 -90.6 52.7 22.7 -6.0 1.5 84 451 A S < - 0 0 72 -2,-1.0 -2,-0.0 -3,-0.8 -3,-0.0 -0.401 17.4-148.1 -59.5 106.0 23.1 -9.8 2.0 85 452 A L - 0 0 120 -2,-0.6 2,-0.3 1,-0.1 -1,-0.1 -0.137 7.0-125.4 -70.5 171.0 26.0 -10.0 4.3 86 453 A N - 0 0 158 0, 0.0 2,-0.6 0, 0.0 -1,-0.1 -0.928 13.1-120.7-123.5 147.4 28.5 -12.9 4.3 87 454 A A 0 0 103 -2,-0.3 0, 0.0 1,-0.2 0, 0.0 -0.767 360.0 360.0 -89.9 117.6 29.7 -15.2 7.0 88 455 A A 0 0 155 -2,-0.6 -1,-0.2 0, 0.0 0, 0.0 0.989 360.0 360.0 -66.1 360.0 33.4 -15.1 7.6