==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=6-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER PROTEIN BINDING 03-APR-07 2YSC . COMPND 2 MOLECULE: AMYLOID BETA A4 PRECURSOR PROTEIN-BINDING FAMILY . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR S.OHNISHI,M.YONEYAMA,S.KOSHIBA,T.HARADA,S.WATANABE,T.KIGAWA, . 39 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 3365.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 15 38.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 10 25.6 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 2.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 2.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 4 10.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 2 5.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 94 0, 0.0 5,-0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 75.0 1.6 1.1 -14.1 2 2 A S + 0 0 136 1,-0.2 3,-0.2 3,-0.1 0, 0.0 0.968 360.0 38.7 -57.0 -58.0 -1.1 1.2 -16.7 3 3 A S S S+ 0 0 133 1,-0.2 2,-0.5 2,-0.1 -1,-0.2 0.946 131.3 27.1 -59.0 -51.2 1.1 -0.4 -19.4 4 4 A G - 0 0 37 1,-0.2 -1,-0.2 2,-0.1 0, 0.0 -0.946 59.8-174.4-121.7 115.5 2.7 -2.8 -17.0 5 5 A S + 0 0 114 -2,-0.5 -1,-0.2 -3,-0.2 -2,-0.1 0.942 56.1 105.7 -68.6 -49.1 1.0 -4.0 -13.9 6 6 A S + 0 0 126 -5,-0.0 2,-0.2 2,-0.0 -2,-0.1 -0.013 50.3 108.1 -35.5 121.4 4.0 -5.9 -12.5 7 7 A G + 0 0 62 2,-0.0 2,-0.2 31,-0.0 31,-0.0 -0.492 33.6 171.8 160.6 127.6 5.4 -3.7 -9.7 8 8 A G - 0 0 35 -2,-0.2 31,-0.3 28,-0.0 -2,-0.0 -0.533 35.3 -82.0-131.1-162.2 5.6 -3.8 -5.9 9 9 A L - 0 0 59 -2,-0.2 29,-0.1 29,-0.1 3,-0.1 -0.889 39.0-117.3-114.6 142.8 7.1 -1.9 -2.9 10 10 A P > - 0 0 18 0, 0.0 3,-1.4 0, 0.0 2,-0.6 -0.163 46.4 -77.0 -69.8 166.3 10.6 -2.4 -1.5 11 11 A P T 3 S+ 0 0 113 0, 0.0 3,-0.1 0, 0.0 15,-0.0 -0.536 116.2 44.8 -69.8 110.1 11.4 -3.7 2.0 12 12 A G T 3 S+ 0 0 26 -2,-0.6 15,-2.5 1,-0.4 2,-0.0 0.156 79.6 116.2 143.4 -18.9 10.8 -0.8 4.4 13 13 A W E < -A 26 0A 31 -3,-1.4 -1,-0.4 13,-0.3 2,-0.3 -0.273 43.1-161.6 -74.7 164.2 7.5 0.7 3.3 14 14 A R E -A 25 0A 146 11,-0.9 11,-1.9 -3,-0.1 2,-0.7 -0.917 13.1-141.5-153.7 122.2 4.4 0.8 5.4 15 15 A K E -A 24 0A 100 -2,-0.3 2,-0.3 9,-0.2 9,-0.2 -0.751 25.2-168.9 -87.9 113.7 0.8 1.3 4.5 16 16 A I E -A 23 0A 50 7,-1.9 7,-0.7 -2,-0.7 2,-0.5 -0.705 11.8-150.8-102.3 154.1 -1.1 3.3 7.1 17 17 A H E +A 22 0A 130 -2,-0.3 2,-0.3 5,-0.2 5,-0.2 -0.927 23.5 165.2-129.2 108.0 -4.8 3.9 7.4 18 18 A D E > -A 21 0A 103 3,-2.5 3,-0.5 -2,-0.5 -2,-0.0 -0.828 51.3-107.9-120.0 159.1 -6.1 7.2 8.9 19 19 A A T 3 S+ 0 0 110 -2,-0.3 3,-0.1 1,-0.3 -1,-0.1 0.817 121.0 56.4 -51.8 -32.4 -9.5 8.9 8.9 20 20 A A T 3 S- 0 0 90 1,-0.2 2,-0.3 -3,-0.0 -1,-0.3 0.911 123.0 -87.7 -67.5 -43.9 -7.9 11.5 6.5 21 21 A G E < -A 18 0A 24 -3,-0.5 -3,-2.5 2,-0.0 2,-0.4 -0.929 52.2 -52.1 170.3-144.5 -7.0 8.8 4.0 22 22 A T E +A 17 0A 51 -2,-0.3 2,-0.3 -5,-0.2 -5,-0.2 -0.993 46.0 168.1-135.1 129.1 -4.2 6.4 3.1 23 23 A Y E -A 16 0A 86 -7,-0.7 -7,-1.9 -2,-0.4 2,-0.4 -0.966 28.3-124.8-138.4 154.0 -0.5 7.2 2.6 24 24 A Y E -AB 15 33A 23 9,-1.6 9,-1.6 11,-0.4 2,-0.4 -0.822 20.4-164.6-102.3 137.4 2.7 5.2 2.2 25 25 A W E -AB 14 32A 93 -11,-1.9 -11,-0.9 -2,-0.4 2,-0.5 -0.980 8.9-147.7-125.2 126.9 5.8 5.7 4.5 26 26 A H E -A 13 0A 18 5,-3.2 -13,-0.3 -2,-0.4 4,-0.2 -0.807 2.2-161.2 -95.7 126.0 9.3 4.4 3.8 27 27 A V S S+ 0 0 85 -15,-2.5 -1,-0.2 -2,-0.5 3,-0.1 0.965 93.6 31.0 -66.8 -54.6 11.4 3.5 6.8 28 28 A P S S+ 0 0 84 0, 0.0 -1,-0.1 0, 0.0 -16,-0.1 0.945 127.2 41.0 -69.8 -50.9 14.8 3.6 5.0 29 29 A S S S- 0 0 75 2,-0.1 -2,-0.2 1,-0.1 3,-0.1 0.449 93.5-148.9 -77.9 0.5 13.9 6.3 2.5 30 30 A G + 0 0 55 -4,-0.2 2,-0.3 1,-0.2 -3,-0.2 0.771 49.8 141.0 34.0 34.6 12.1 8.1 5.3 31 31 A S - 0 0 40 -5,-0.2 -5,-3.2 2,-0.0 2,-0.4 -0.786 40.5-159.5-107.0 149.7 9.8 9.4 2.6 32 32 A T E +B 25 0A 93 -2,-0.3 2,-0.2 -7,-0.2 -7,-0.2 -0.941 17.7 167.6-133.1 111.9 6.0 9.8 2.7 33 33 A Q E -B 24 0A 88 -9,-1.6 -9,-1.6 -2,-0.4 -2,-0.0 -0.667 39.6-128.3-116.2 172.3 3.9 10.0 -0.4 34 34 A W S S+ 0 0 189 -2,-0.2 2,-0.1 -11,-0.2 -12,-0.1 0.789 91.8 45.4 -89.2 -32.6 0.1 9.8 -1.2 35 35 A Q S S- 0 0 155 1,-0.1 -11,-0.4 -12,-0.1 -2,-0.2 -0.370 107.5 -67.5-101.7-177.0 0.4 7.1 -3.8 36 36 A R - 0 0 148 -2,-0.1 -1,-0.1 -13,-0.1 -2,-0.1 -0.614 53.7-139.2 -77.7 121.4 2.3 3.8 -4.0 37 37 A P - 0 0 5 0, 0.0 2,-0.3 0, 0.0 -1,-0.1 -0.033 13.2-133.5 -69.8 177.6 6.1 4.4 -4.2 38 38 A T 0 0 119 -29,-0.1 -29,-0.1 1,-0.1 -31,-0.0 -0.871 360.0 360.0-133.2 166.0 8.5 2.4 -6.3 39 39 A W 0 0 221 -31,-0.3 -1,-0.1 -2,-0.3 -30,-0.1 0.904 360.0 360.0 -61.8 360.0 11.9 0.7 -6.0