==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=6-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER SIGNALING PROTEIN 03-APR-07 2YSQ . COMPND 2 MOLECULE: RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR 9; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR X.R.QIN,F.HAYASHI,S.YOKOYAMA,RIKEN STRUCTURAL . 81 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7067.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 39 48.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 20 24.7 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 2 2.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 11 13.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 3 3.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 128 0, 0.0 2,-0.2 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0-153.8 25.0 -0.9 -15.2 2 2 A S + 0 0 122 2,-0.0 2,-0.3 0, 0.0 0, 0.0 -0.789 360.0 133.2-164.9 115.8 21.4 -1.8 -14.5 3 3 A S + 0 0 138 -2,-0.2 2,-0.2 2,-0.0 0, 0.0 -0.983 10.1 124.0-158.7 162.9 19.1 -4.4 -16.1 4 4 A G - 0 0 66 -2,-0.3 2,-0.3 2,-0.0 -2,-0.0 -0.686 21.6-163.3 151.6 155.0 16.7 -7.2 -15.2 5 5 A S - 0 0 122 -2,-0.2 2,-0.3 3,-0.0 3,-0.0 -0.906 1.7-166.6-151.4 177.1 13.1 -8.5 -15.8 6 6 A S - 0 0 106 -2,-0.3 3,-0.1 1,-0.0 -2,-0.0 -0.982 45.5 -49.8-165.8 160.7 10.5 -10.9 -14.4 7 7 A G - 0 0 75 -2,-0.3 2,-1.1 1,-0.1 -1,-0.0 0.086 54.8-120.9 -34.7 143.9 7.2 -12.5 -15.3 8 8 A D + 0 0 166 2,-0.0 2,-0.4 -3,-0.0 -1,-0.1 -0.738 59.2 134.3 -97.5 88.5 4.6 -10.1 -16.6 9 9 A S - 0 0 105 -2,-1.1 2,-0.6 -3,-0.1 -2,-0.0 -0.960 37.2-158.8-141.0 119.9 1.7 -10.5 -14.1 10 10 A I - 0 0 119 -2,-0.4 2,-0.4 2,-0.0 28,-0.1 -0.871 10.3-160.3-102.3 118.8 -0.3 -7.6 -12.6 11 11 A V E -A 37 0A 48 -2,-0.6 26,-2.0 26,-0.5 2,-0.5 -0.825 2.1-163.2-100.7 133.9 -2.2 -8.4 -9.4 12 12 A S E -A 36 0A 26 -2,-0.4 53,-1.5 24,-0.2 54,-0.2 -0.961 9.6-176.9-120.7 119.5 -5.1 -6.3 -8.2 13 13 A A E -AB 35 64A 0 22,-1.0 22,-1.1 -2,-0.5 2,-0.4 -0.661 17.1-136.2-109.7 166.6 -6.3 -6.4 -4.6 14 14 A E E -AB 34 63A 86 49,-1.5 49,-2.7 -2,-0.2 2,-0.2 -0.985 26.7-111.0-128.9 125.4 -9.2 -4.7 -2.8 15 15 A A E - B 0 62A 1 18,-1.4 17,-0.7 -2,-0.4 47,-0.2 -0.321 27.2-169.8 -54.5 114.2 -9.0 -3.2 0.7 16 16 A V S S+ 0 0 58 45,-1.5 2,-0.3 -2,-0.2 -1,-0.2 0.818 71.2 11.7 -76.7 -32.1 -11.2 -5.5 2.9 17 17 A W S S- 0 0 173 44,-0.8 2,-0.5 13,-0.0 -1,-0.2 -0.980 93.2 -85.1-145.4 155.9 -11.0 -3.0 5.8 18 18 A D - 0 0 95 -2,-0.3 2,-1.1 13,-0.1 12,-0.2 -0.469 38.7-159.3 -64.5 112.5 -9.9 0.5 6.5 19 19 A H - 0 0 40 10,-0.8 10,-0.5 -2,-0.5 -1,-0.1 -0.710 12.8-167.1 -98.0 84.7 -6.2 0.4 7.3 20 20 A V - 0 0 117 -2,-1.1 2,-0.4 8,-0.1 7,-0.1 -0.356 2.2-165.7 -70.6 150.4 -5.5 3.6 9.2 21 21 A T - 0 0 34 5,-0.1 7,-0.1 1,-0.1 -2,-0.0 -0.994 26.4-150.9-143.2 133.2 -1.9 4.7 9.7 22 22 A M S S+ 0 0 188 -2,-0.4 2,-0.3 2,-0.0 -1,-0.1 0.586 86.8 66.6 -75.4 -9.9 -0.4 7.3 12.0 23 23 A A S S- 0 0 38 1,-0.1 5,-0.1 -3,-0.0 -2,-0.0 -0.861 74.5-141.8-114.7 149.0 2.3 7.8 9.5 24 24 A N S S+ 0 0 148 -2,-0.3 4,-0.3 1,-0.2 -1,-0.1 0.885 95.0 70.3 -73.0 -40.2 2.1 9.3 5.9 25 25 A R S S+ 0 0 212 2,-0.1 31,-0.3 30,-0.1 -1,-0.2 0.918 83.1 79.5 -40.2 -65.0 4.6 6.8 4.5 26 26 A E S S- 0 0 50 1,-0.1 2,-1.1 29,-0.1 31,-0.1 -0.131 95.7-110.8 -48.5 139.7 2.2 3.8 4.8 27 27 A L - 0 0 3 29,-1.5 2,-0.2 26,-0.1 -1,-0.1 -0.655 38.4-160.7 -80.3 100.4 -0.3 3.7 2.0 28 28 A A + 0 0 38 -2,-1.1 2,-0.3 -4,-0.3 -8,-0.1 -0.512 20.1 154.9 -81.9 149.5 -3.6 4.6 3.7 29 29 A F - 0 0 13 -10,-0.5 -10,-0.8 -2,-0.2 2,-0.4 -0.974 36.4-111.0-163.1 170.3 -7.0 3.7 2.0 30 30 A K > - 0 0 161 -2,-0.3 3,-3.0 -12,-0.2 -15,-0.2 -0.915 52.9 -78.5-116.4 141.0 -10.6 2.9 2.7 31 31 A A T 3 S+ 0 0 63 -2,-0.4 -15,-0.2 1,-0.3 -13,-0.1 -0.040 123.2 30.1 -35.7 107.8 -12.4 -0.4 2.2 32 32 A G T 3 S+ 0 0 33 -17,-0.7 -1,-0.3 1,-0.4 -16,-0.1 -0.162 79.0 130.5 130.4 -41.0 -12.9 -0.5 -1.5 33 33 A D < - 0 0 76 -3,-3.0 -18,-1.4 -19,-0.1 2,-0.6 -0.209 53.3-136.7 -49.0 125.5 -9.9 1.5 -2.8 34 34 A V E -A 14 0A 78 -20,-0.2 2,-0.3 -3,-0.1 -20,-0.2 -0.800 21.1-166.7 -93.6 120.0 -8.3 -0.6 -5.6 35 35 A I E -A 13 0A 1 -22,-1.1 -22,-1.0 -2,-0.6 2,-0.6 -0.809 16.9-130.8-107.3 147.4 -4.5 -0.7 -5.5 36 36 A K E -AC 12 49A 102 13,-1.6 13,-1.1 -2,-0.3 2,-0.5 -0.859 18.6-139.1-100.4 117.1 -2.1 -1.9 -8.2 37 37 A V E +AC 11 48A 10 -26,-2.0 -26,-0.5 -2,-0.6 11,-0.2 -0.616 25.2 173.0 -77.2 121.9 0.6 -4.3 -7.0 38 38 A L E + 0 0 92 9,-2.2 2,-0.3 -2,-0.5 -1,-0.2 0.896 66.2 7.9 -92.5 -54.0 3.9 -3.6 -8.6 39 39 A D E - C 0 47A 103 8,-0.6 8,-1.6 -29,-0.0 -1,-0.3 -0.973 48.9-170.4-133.4 147.1 6.3 -5.9 -6.8 40 40 A A + 0 0 54 -2,-0.3 6,-0.1 6,-0.2 5,-0.0 -0.392 33.2 140.9-132.5 56.2 5.7 -8.8 -4.3 41 41 A S + 0 0 109 4,-0.1 5,-0.1 3,-0.0 -1,-0.1 0.994 60.6 58.2 -60.4 -67.3 9.2 -9.7 -3.1 42 42 A N S S- 0 0 100 3,-0.7 0, 0.0 1,-0.1 0, 0.0 0.146 90.1-116.5 -53.8 179.2 8.3 -10.3 0.6 43 43 A K S S+ 0 0 180 1,-0.1 -1,-0.1 3,-0.0 3,-0.1 0.841 108.4 10.2 -90.0 -40.0 5.8 -12.9 1.6 44 44 A D S S+ 0 0 60 1,-0.1 15,-0.8 16,-0.0 2,-0.3 -0.067 117.3 79.6-130.0 31.6 3.3 -10.6 3.2 45 45 A W E + D 0 58A 116 13,-0.1 -3,-0.7 14,-0.1 2,-0.3 -0.868 50.3 160.2-145.5 107.5 4.7 -7.2 2.1 46 46 A W E - D 0 57A 49 11,-0.9 11,-1.0 -2,-0.3 2,-0.5 -0.895 38.4-113.1-126.8 156.6 4.1 -5.8 -1.3 47 47 A W E -CD 39 56A 115 -8,-1.6 -9,-2.2 -2,-0.3 -8,-0.6 -0.770 32.2-159.4 -92.2 127.3 4.3 -2.3 -2.8 48 48 A G E -CD 37 55A 0 7,-2.2 7,-1.8 -2,-0.5 2,-0.4 -0.694 6.4-154.0-105.4 159.0 1.1 -0.7 -4.0 49 49 A Q E -CD 36 54A 77 -13,-1.1 -13,-1.6 -2,-0.3 2,-0.3 -0.956 10.0-170.2-136.8 116.4 0.4 2.1 -6.4 50 50 A I - 0 0 20 3,-2.0 -15,-0.1 -2,-0.4 -17,-0.0 -0.728 40.6-101.8-104.5 154.4 -2.7 4.3 -6.4 51 51 A D S S- 0 0 174 -2,-0.3 -1,-0.1 1,-0.2 -16,-0.0 0.871 117.3 -6.2 -34.3 -59.7 -3.8 6.9 -8.9 52 52 A D S S+ 0 0 130 -3,-0.0 -1,-0.2 2,-0.0 2,-0.1 0.747 129.1 71.1-108.3 -40.2 -2.5 9.7 -6.8 53 53 A E - 0 0 81 -4,-0.1 -3,-2.0 -25,-0.0 2,-0.3 -0.380 60.1-176.7 -78.3 158.5 -1.5 7.9 -3.6 54 54 A E E +D 49 0A 117 -5,-0.2 2,-0.3 -29,-0.1 -5,-0.2 -0.981 25.0 83.0-157.4 143.6 1.6 5.6 -3.4 55 55 A G E S-D 48 0A 1 -7,-1.8 -7,-2.2 -2,-0.3 2,-0.5 -0.993 71.3 -44.2 159.5-158.8 3.2 3.4 -0.9 56 56 A W E -D 47 0A 84 -2,-0.3 -29,-1.5 -31,-0.3 -9,-0.2 -0.923 46.1-168.5-112.3 130.4 3.2 -0.1 0.7 57 57 A F E -D 46 0A 0 -11,-1.0 -11,-0.9 -2,-0.5 2,-0.2 -0.873 28.8-101.5-118.0 150.1 -0.0 -1.8 1.8 58 58 A P E > -D 45 0A 10 0, 0.0 3,-0.5 0, 0.0 -13,-0.1 -0.449 17.0-154.8 -69.7 135.4 -0.6 -5.0 3.9 59 59 A A G > S+ 0 0 15 -15,-0.8 3,-0.7 1,-0.2 5,-0.1 0.617 93.4 63.6 -84.0 -14.2 -1.5 -8.1 2.0 60 60 A S G 3 S+ 0 0 87 -16,-0.3 -1,-0.2 1,-0.2 -15,-0.0 0.495 103.2 49.2 -86.7 -4.8 -3.2 -9.5 5.0 61 61 A F G < S+ 0 0 95 -3,-0.5 -45,-1.5 -45,-0.0 -44,-0.8 0.025 102.6 74.6-120.8 24.2 -5.8 -6.7 4.9 62 62 A V E < -B 15 0A 10 -3,-0.7 2,-0.6 -47,-0.2 -47,-0.2 -0.981 69.6-133.5-138.7 149.9 -6.6 -7.0 1.2 63 63 A R E -B 14 0A 98 -49,-2.7 -49,-1.5 -2,-0.3 -3,-0.1 -0.907 24.3-134.5-108.2 115.3 -8.7 -9.4 -1.0 64 64 A L E -B 13 0A 61 -2,-0.6 3,-0.5 -51,-0.2 -51,-0.2 -0.295 3.0-145.6 -64.6 148.6 -7.0 -10.6 -4.2 65 65 A W S S+ 0 0 140 -53,-1.5 2,-0.8 1,-0.2 -1,-0.1 0.916 97.4 49.5 -81.2 -47.9 -9.2 -10.6 -7.4 66 66 A V S S+ 0 0 121 -54,-0.2 -1,-0.2 2,-0.1 2,-0.2 -0.186 84.6 147.2 -86.0 43.4 -7.7 -13.6 -9.0 67 67 A N - 0 0 56 -2,-0.8 -4,-0.0 -3,-0.5 0, 0.0 -0.543 41.4-157.6 -81.8 145.9 -8.1 -15.6 -5.8 68 68 A Q + 0 0 173 -2,-0.2 2,-0.3 2,-0.0 -1,-0.1 -0.152 62.5 92.6-113.8 36.4 -8.9 -19.4 -5.9 69 69 A E - 0 0 99 2,-0.0 2,-0.4 0, 0.0 -2,-0.1 -0.915 56.0-152.9-129.6 156.2 -10.4 -19.7 -2.5 70 70 A D - 0 0 132 -2,-0.3 2,-0.3 2,-0.0 -2,-0.0 -0.969 10.3-166.1-134.3 118.7 -14.0 -19.4 -1.1 71 71 A E - 0 0 139 -2,-0.4 2,-0.6 2,-0.1 -2,-0.0 -0.753 13.0-143.1-103.7 150.2 -14.8 -18.4 2.5 72 72 A V + 0 0 115 -2,-0.3 2,-0.2 2,-0.0 -2,-0.0 -0.868 52.0 111.0-116.3 98.3 -18.1 -18.8 4.2 73 73 A E + 0 0 143 -2,-0.6 -2,-0.1 2,-0.1 0, 0.0 -0.759 10.1 140.9-169.5 117.7 -19.0 -15.9 6.5 74 74 A E - 0 0 147 -2,-0.2 -1,-0.0 2,-0.0 -2,-0.0 0.620 40.8-150.1-126.1 -42.2 -21.7 -13.2 6.3 75 75 A G - 0 0 45 1,-0.0 2,-0.3 0, 0.0 -2,-0.1 0.491 16.6-176.1 73.6 138.6 -23.0 -12.6 9.8 76 76 A S + 0 0 124 1,-0.1 -1,-0.0 2,-0.0 -2,-0.0 -0.910 34.7 105.3-154.5 179.0 -26.5 -11.5 10.6 77 77 A G + 0 0 65 -2,-0.3 3,-0.1 2,-0.1 -1,-0.1 0.843 25.3 174.5 101.9 69.9 -28.8 -10.5 13.5 78 78 A P - 0 0 130 0, 0.0 2,-0.3 0, 0.0 -2,-0.0 0.933 63.3 -44.4 -69.8 -48.5 -29.4 -6.7 13.6 79 79 A S - 0 0 111 0, 0.0 2,-0.3 0, 0.0 -2,-0.1 -0.977 46.4-147.0-173.2 171.4 -32.0 -6.7 16.4 80 80 A S 0 0 120 -2,-0.3 0, 0.0 -3,-0.1 0, 0.0 -0.931 360.0 360.0-158.2 129.8 -35.1 -8.4 17.8 81 81 A G 0 0 130 -2,-0.3 -1,-0.1 0, 0.0 0, 0.0 0.697 360.0 360.0 -85.1 360.0 -38.1 -7.2 19.8