==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=21-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER ANTIBIOTIC 11-FEB-05 1YTR . COMPND 2 MOLECULE: BACTERIOCIN PLANTARICIN A; . SOURCE 2 SYNTHETIC: YES; . AUTHOR P.E.KRISTIANSEN,G.FIMLAND,D.MANTZILAS,J.NISSEN-MEYER . 26 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 2956.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 18 69.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 9 34.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 9 34.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A K 0 0 222 0, 0.0 4,-0.1 0, 0.0 3,-0.1 0.000 360.0 360.0 360.0 68.2 -4.7 9.9 3.3 2 2 A S - 0 0 121 2,-0.2 2,-0.3 1,-0.2 3,-0.1 0.436 360.0 -40.0-141.3 -58.5 -5.9 11.5 0.1 3 3 A S S S+ 0 0 100 1,-0.4 -1,-0.2 0, 0.0 0, 0.0 -0.943 96.4 40.6-175.1 157.5 -9.1 10.0 -1.1 4 4 A A - 0 0 85 -2,-0.3 -1,-0.4 1,-0.1 -2,-0.2 0.742 48.7-157.9 62.1 122.5 -11.0 6.8 -1.5 5 5 A Y + 0 0 163 -3,-0.1 2,-0.2 -4,-0.1 -1,-0.1 -0.446 24.2 166.0-129.5 58.5 -10.8 4.3 1.3 6 6 A S - 0 0 81 1,-0.1 0, 0.0 -2,-0.0 0, 0.0 -0.482 35.3-139.6 -76.1 145.2 -11.6 1.0 -0.2 7 7 A L + 0 0 168 -2,-0.2 6,-0.1 1,-0.1 -1,-0.1 0.985 41.0 163.9 -66.3 -60.9 -10.9 -2.2 1.8 8 8 A Q - 0 0 93 4,-0.1 -1,-0.1 1,-0.1 -3,-0.0 -0.239 29.9-153.7 72.2-164.3 -9.6 -4.2 -1.2 9 9 A M S S+ 0 0 168 -2,-0.0 -1,-0.1 0, 0.0 -2,-0.0 0.155 82.4 27.6-175.4 -40.3 -7.6 -7.4 -0.7 10 10 A G S S+ 0 0 46 3,-0.1 2,-0.1 4,-0.0 -2,-0.1 -0.395 123.4 27.7-138.3 57.4 -5.4 -7.9 -3.8 11 11 A A S >> S+ 0 0 44 0, 0.0 3,-2.6 0, 0.0 4,-0.6 -0.291 114.2 36.8-167.9 -99.1 -4.7 -4.5 -5.2 12 12 A T H >> S+ 0 0 75 1,-0.3 3,-1.5 2,-0.2 4,-1.1 0.855 110.2 67.1 -40.3 -45.9 -4.7 -1.3 -3.3 13 13 A A H >> S+ 0 0 22 1,-0.3 4,-1.4 2,-0.2 3,-0.9 0.870 88.3 67.2 -43.5 -44.3 -3.1 -3.2 -0.5 14 14 A I H X> S+ 0 0 116 -3,-2.6 3,-1.1 1,-0.3 4,-0.8 0.897 96.6 53.0 -42.9 -51.1 -0.1 -3.6 -2.8 15 15 A K H XX S+ 0 0 116 -3,-1.5 3,-1.3 -4,-0.6 4,-1.0 0.880 101.1 61.2 -53.2 -41.1 0.5 0.1 -2.4 16 16 A Q H XX S+ 0 0 88 -4,-1.1 4,-1.0 -3,-0.9 3,-0.6 0.852 92.0 66.3 -54.2 -37.3 0.4 -0.4 1.3 17 17 A V H XX S+ 0 0 56 -4,-1.4 3,-0.9 -3,-1.1 4,-0.8 0.872 97.6 53.9 -51.9 -40.2 3.4 -2.7 0.8 18 18 A K H XX S+ 0 0 116 -3,-1.3 4,-1.0 -4,-0.8 3,-0.6 0.862 101.2 58.5 -62.7 -36.8 5.3 0.4 -0.2 19 19 A K H << S+ 0 0 104 -4,-1.0 -1,-0.3 -3,-0.6 -2,-0.2 0.737 107.2 48.4 -64.1 -22.5 4.3 2.0 3.0 20 20 A L H XX S+ 0 0 53 -4,-1.0 3,-0.7 -3,-0.9 4,-0.6 0.631 103.3 61.3 -89.9 -17.9 6.0 -0.9 4.7 21 21 A F H << S+ 0 0 101 -4,-0.8 -2,-0.2 -3,-0.6 -1,-0.2 0.667 75.2 91.0 -80.5 -18.8 9.1 -0.3 2.5 22 22 A K T 3< S+ 0 0 159 -4,-1.0 -1,-0.2 1,-0.3 -2,-0.1 0.759 99.8 35.9 -46.9 -25.6 9.5 3.1 3.9 23 23 A K T <4 S+ 0 0 151 -3,-0.7 2,-0.4 -4,-0.1 -1,-0.3 0.749 97.9 93.5 -97.3 -33.2 11.7 1.3 6.4 24 24 A W < + 0 0 137 -4,-0.6 2,-0.2 -6,-0.1 -3,-0.0 -0.497 48.9 146.8 -65.7 119.0 13.1 -1.2 3.9 25 25 A G 0 0 65 -2,-0.4 -3,-0.0 1,-0.0 -1,-0.0 -0.711 360.0 360.0-161.6 103.1 16.3 0.2 2.7 26 26 A W 0 0 306 -2,-0.2 -2,-0.1 0, 0.0 -1,-0.0 0.572 360.0 360.0 -44.4 360.0 19.4 -1.8 1.7