==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=6-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RNA BINDING PROTEIN 05-APR-07 2YU6 . COMPND 2 MOLECULE: YTH DOMAIN-CONTAINING PROTEIN 2; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR R.ENDO,Y.MUTO,M.INOUE,T.KIGAWA,M.SHIROUZU,T.TARADA, . 141 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 8340.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 97 68.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 8 5.7 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 25 17.7 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 0.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 1 0.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 14 9.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 19 13.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 21 14.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 1.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 1 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 3 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 128 0, 0.0 2,-0.3 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0-130.7 -31.4 -8.0 3.1 2 2 A S - 0 0 130 2,-0.0 2,-0.3 0, 0.0 0, 0.0 -0.968 360.0-169.3-142.0 156.6 -27.7 -8.5 2.9 3 3 A S - 0 0 117 -2,-0.3 2,-0.9 0, 0.0 0, 0.0 -0.995 28.1-117.2-149.3 141.2 -24.5 -6.7 4.0 4 4 A G + 0 0 73 -2,-0.3 -2,-0.0 1,-0.2 3,-0.0 -0.688 37.1 164.0 -83.2 106.6 -20.8 -7.0 3.2 5 5 A S + 0 0 127 -2,-0.9 2,-0.2 1,-0.0 -1,-0.2 0.922 62.1 52.2 -85.2 -52.4 -19.0 -8.0 6.4 6 6 A S + 0 0 84 41,-0.1 2,-0.3 42,-0.0 41,-0.1 -0.606 69.3 143.0 -87.9 147.1 -15.7 -9.2 5.0 7 7 A G - 0 0 35 39,-0.3 2,-0.2 -2,-0.2 39,-0.0 -0.981 48.4 -81.9-172.6 165.1 -13.6 -7.0 2.6 8 8 A V - 0 0 33 -2,-0.3 42,-0.2 39,-0.2 2,-0.2 -0.499 41.3-142.6 -79.1 147.0 -10.2 -5.9 1.5 9 9 A R E -a 50 0A 98 40,-1.1 42,-2.1 -2,-0.2 2,-0.4 -0.466 4.2-132.8-102.1 175.9 -8.3 -3.2 3.4 10 10 A Y E +aB 51 126A 18 116,-0.7 116,-3.2 40,-0.2 2,-0.4 -0.958 21.0 179.6-137.2 117.4 -6.1 -0.3 2.3 11 11 A F E -aB 52 125A 1 40,-2.3 42,-1.4 -2,-0.4 2,-0.6 -0.953 23.3-134.5-120.4 136.1 -2.7 0.5 3.9 12 12 A I E -aB 53 124A 1 112,-2.0 111,-1.9 -2,-0.4 112,-1.1 -0.785 21.3-170.5 -91.8 117.4 -0.4 3.3 2.9 13 13 A M E -a 54 0A 1 40,-2.1 42,-2.0 -2,-0.6 2,-0.2 -0.930 6.7-155.8-112.4 116.7 3.3 2.3 2.6 14 14 A K E -a 55 0A 62 -2,-0.6 2,-0.5 40,-0.2 42,-0.2 -0.624 2.9-152.9 -90.0 148.4 5.9 5.0 2.1 15 15 A S E -a 56 0A 4 40,-2.7 42,-2.1 -2,-0.2 43,-0.4 -0.979 12.4-148.2-126.7 123.0 9.3 4.3 0.6 16 16 A S S S+ 0 0 82 -2,-0.5 42,-0.6 40,-0.2 2,-0.2 0.934 85.3 7.4 -49.5 -54.4 12.4 6.3 1.3 17 17 A N S S- 0 0 101 40,-0.1 4,-0.3 1,-0.1 40,-0.1 -0.693 71.2-119.6-123.6 177.0 13.8 5.8 -2.2 18 18 A L S >> S+ 0 0 56 -2,-0.2 3,-2.0 2,-0.2 4,-1.4 0.918 105.3 61.1 -83.2 -49.5 12.6 4.3 -5.5 19 19 A R H >> S+ 0 0 179 1,-0.3 3,-1.3 2,-0.2 4,-1.2 0.911 97.0 60.0 -42.0 -57.2 15.2 1.5 -5.8 20 20 A N H 34 S+ 0 0 22 1,-0.3 4,-0.5 2,-0.2 -1,-0.3 0.817 105.4 51.1 -42.5 -35.8 14.1 -0.1 -2.6 21 21 A L H X> S+ 0 0 0 -3,-2.0 3,-1.6 -4,-0.3 4,-0.9 0.856 95.7 68.8 -72.4 -36.1 10.7 -0.5 -4.3 22 22 A E H XX S+ 0 0 63 -4,-1.4 4,-1.9 -3,-1.3 3,-1.3 0.873 90.6 63.0 -49.7 -41.2 12.2 -2.1 -7.4 23 23 A I H 3X>S+ 0 0 14 -4,-1.2 4,-2.1 1,-0.3 5,-0.9 0.849 101.9 50.4 -53.6 -36.3 13.0 -5.1 -5.3 24 24 A S H <45S+ 0 0 0 -3,-1.6 -1,-0.3 -4,-0.5 -2,-0.2 0.702 109.2 52.2 -75.5 -20.1 9.3 -5.6 -4.8 25 25 A Q H <<5S+ 0 0 45 -3,-1.3 -2,-0.2 -4,-0.9 -1,-0.2 0.767 124.2 25.3 -85.4 -28.7 8.8 -5.3 -8.5 26 26 A Q H <5S+ 0 0 147 -4,-1.9 -2,-0.2 3,-0.1 -3,-0.2 0.869 131.7 35.2 -98.5 -58.1 11.4 -8.0 -9.3 27 27 A K T <5S- 0 0 101 -4,-2.1 -3,-0.2 -5,-0.3 -4,-0.1 0.827 99.0-134.0 -67.3 -32.0 11.5 -10.2 -6.2 28 28 A G < + 0 0 22 -5,-0.9 63,-1.5 1,-0.3 2,-0.3 0.806 67.0 99.7 81.5 30.8 7.8 -9.7 -5.7 29 29 A I E -E 90 0B 6 -6,-0.5 -1,-0.3 61,-0.3 2,-0.3 -0.867 50.8-157.0-139.9 172.9 8.1 -9.0 -2.0 30 30 A W E -E 89 0B 17 59,-2.7 59,-1.9 -2,-0.3 2,-0.5 -0.974 6.2-152.5-156.7 140.0 8.2 -6.1 0.5 31 31 A S E +E 88 0B 8 -2,-0.3 2,-0.2 57,-0.2 57,-0.2 -0.953 21.0 176.4-120.3 115.9 9.5 -5.5 4.0 32 32 A T - 0 0 14 55,-0.6 54,-0.5 -2,-0.5 5,-0.1 -0.623 42.6 -66.8-111.2 171.5 7.8 -3.0 6.3 33 33 A T > - 0 0 49 -2,-0.2 3,-1.8 1,-0.2 4,-0.3 -0.240 40.0-126.0 -57.8 141.7 8.3 -1.9 9.9 34 34 A P T 3 S+ 0 0 86 0, 0.0 4,-0.3 0, 0.0 -1,-0.2 0.420 106.9 69.7 -69.8 3.6 7.5 -4.5 12.5 35 35 A S T 3 S+ 0 0 104 1,-0.1 -2,-0.1 2,-0.1 0, 0.0 0.549 108.3 31.4 -96.8 -11.4 5.2 -1.9 14.1 36 36 A N S <> S+ 0 0 21 -3,-1.8 4,-0.9 2,-0.1 -1,-0.1 0.171 97.2 88.3-129.0 13.5 2.7 -2.0 11.2 37 37 A E H > S+ 0 0 22 -4,-0.3 4,-2.4 2,-0.2 5,-0.1 0.927 74.1 67.8 -78.3 -48.7 3.1 -5.7 10.2 38 38 A R H >> S+ 0 0 179 -4,-0.3 4,-2.7 1,-0.2 3,-0.8 0.885 101.3 47.5 -34.3 -68.3 0.5 -7.1 12.5 39 39 A K H 3>>S+ 0 0 45 1,-0.3 4,-2.8 2,-0.2 5,-0.6 0.920 110.0 51.6 -40.7 -63.8 -2.4 -5.4 10.7 40 40 A L H 3X5S+ 0 0 0 -4,-0.9 4,-1.3 1,-0.2 -1,-0.3 0.849 116.9 43.2 -43.9 -40.4 -1.2 -6.6 7.3 41 41 A N H X5S+ 0 0 143 -4,-2.7 4,-2.6 1,-0.2 3,-1.9 0.954 117.6 51.3 -50.6 -59.2 -4.3 -10.2 10.7 43 43 A A H 3X5S+ 0 0 10 -4,-2.8 4,-1.5 1,-0.3 -1,-0.2 0.890 106.5 55.1 -45.8 -47.4 -6.2 -8.2 8.1 44 44 A F H 3<> -F 61 0C 36 0, 0.0 3,-2.6 0, 0.0 4,-0.7 -0.471 14.5-129.1 -69.8 131.6 -0.4 12.5 -10.2 101 101 A F H >> S+ 0 0 44 -41,-0.8 3,-1.1 1,-0.3 4,-0.8 0.876 104.1 76.1 -45.5 -44.6 -1.7 13.6 -6.8 102 102 A Q H >4 S+ 0 0 160 1,-0.3 3,-0.7 2,-0.2 4,-0.3 0.803 93.0 54.8 -37.5 -36.7 -4.0 16.1 -8.6 103 103 A F H X4 S+ 0 0 67 -3,-2.6 3,-0.6 1,-0.2 -1,-0.3 0.937 116.8 32.9 -66.0 -48.2 -6.1 13.0 -9.4 104 104 A A H << S+ 0 0 2 -3,-1.1 13,-0.4 -4,-0.7 14,-0.3 0.151 90.5 104.2 -94.3 18.2 -6.5 12.0 -5.8 105 105 A H T << S+ 0 0 114 -4,-0.8 -1,-0.2 -3,-0.7 -2,-0.1 0.778 82.2 48.0 -68.9 -26.7 -6.5 15.6 -4.7 106 106 A H S < S+ 0 0 117 -3,-0.6 -1,-0.2 -4,-0.3 -2,-0.1 0.791 96.2 87.6 -83.0 -30.8 -10.2 15.4 -4.2 107 107 A L + 0 0 4 -4,-0.2 10,-1.1 26,-0.1 2,-0.3 -0.431 58.0 174.9 -71.4 143.1 -10.0 12.1 -2.2 108 108 A L E -G 116 0D 78 8,-0.3 8,-0.3 -2,-0.1 7,-0.1 -0.837 32.4-116.6-140.0 176.7 -9.5 12.4 1.5 109 109 A N E > -G 115 0D 0 6,-1.5 3,-1.6 -2,-0.3 6,-1.3 -0.873 16.0-174.4-125.6 98.8 -9.3 10.2 4.7 110 110 A P T 3 S+ 0 0 56 0, 0.0 3,-0.3 0, 0.0 -1,-0.1 0.415 80.3 75.9 -69.7 3.9 -12.0 10.9 7.3 111 111 A W T 3 S+ 0 0 121 1,-0.2 2,-0.3 4,-0.2 14,-0.1 0.702 101.8 35.0 -87.2 -22.6 -10.2 8.4 9.5 112 112 A N S X S- 0 0 48 -3,-1.6 3,-1.2 3,-0.2 -1,-0.2 -0.687 140.6 -53.7-135.0 81.2 -7.4 10.9 10.4 113 113 A D T 3 S- 0 0 143 -3,-0.3 3,-0.1 -2,-0.3 -2,-0.1 0.894 92.1 -78.0 53.6 43.2 -8.7 14.5 10.6 114 114 A N T 3 S+ 0 0 108 1,-0.2 2,-0.3 -5,-0.1 -1,-0.3 0.835 83.1 170.3 33.0 49.4 -10.3 14.1 7.1 115 115 A K E < -G 109 0D 105 -6,-1.3 -6,-1.5 -3,-1.2 -3,-0.2 -0.705 43.7 -84.0 -91.9 140.0 -6.8 14.7 5.8 116 116 A K E > -G 108 0D 42 -2,-0.3 3,-0.7 -8,-0.3 -8,-0.3 0.034 42.5-114.2 -37.4 142.6 -6.0 14.1 2.1 117 117 A V T 3 S+ 0 0 0 -10,-1.1 -9,-0.1 -13,-0.4 -1,-0.1 0.952 116.1 55.0 -46.2 -66.7 -5.3 10.5 1.2 118 118 A Q T 3 S+ 0 0 63 -14,-0.3 2,-2.9 1,-0.2 -1,-0.3 0.815 89.4 85.2 -37.2 -39.4 -1.6 11.0 0.3 119 119 A I < + 0 0 67 -3,-0.7 2,-0.4 2,-0.0 -1,-0.2 -0.373 67.5 119.1 -68.4 71.8 -1.3 12.6 3.7 120 120 A S - 0 0 13 -2,-2.9 3,-0.1 6,-0.0 4,-0.1 -0.989 57.9-130.8-143.8 131.3 -0.7 9.3 5.5 121 121 A R > - 0 0 197 -2,-0.4 3,-1.0 1,-0.2 -109,-0.2 -0.195 48.9 -70.3 -72.8 168.7 2.3 8.0 7.5 122 122 A D T 3 S+ 0 0 78 1,-0.3 -109,-0.2 -109,-0.1 -1,-0.2 -0.391 121.3 13.2 -63.0 130.7 3.9 4.6 6.9 123 123 A G T 3 S+ 0 0 2 -111,-1.9 2,-0.5 1,-0.2 -1,-0.3 0.883 90.5 155.1 70.8 39.1 1.7 1.8 7.9 124 124 A Q E < -B 12 0A 81 -112,-1.1 -112,-2.0 -3,-1.0 -1,-0.2 -0.863 46.1-117.4-104.2 131.9 -1.4 3.9 8.2 125 125 A E E -B 11 0A 64 -2,-0.5 2,-0.5 -114,-0.2 -114,-0.2 -0.450 27.9-155.2 -67.4 131.1 -4.9 2.4 7.9 126 126 A L E -B 10 0A 2 -116,-3.2 -116,-0.7 -2,-0.2 5,-0.1 -0.942 24.0-107.4-114.4 124.6 -6.8 3.8 5.0 127 127 A E > - 0 0 32 -2,-0.5 4,-2.5 1,-0.2 3,-0.4 -0.111 21.1-132.2 -46.9 136.9 -10.6 3.8 4.9 128 128 A P T 4 S+ 0 0 52 0, 0.0 4,-0.3 0, 0.0 -1,-0.2 0.577 104.9 60.8 -69.7 -9.0 -12.0 1.2 2.5 129 129 A Q T > S+ 0 0 118 2,-0.1 4,-0.8 3,-0.1 -2,-0.1 0.849 116.0 27.4 -85.8 -39.2 -14.3 3.9 1.1 130 130 A V H > S+ 0 0 8 -3,-0.4 4,-0.6 2,-0.2 -1,-0.1 0.693 116.9 61.0 -94.3 -23.7 -11.6 6.3 -0.0 131 131 A G H X S+ 0 0 0 -4,-2.5 4,-0.5 2,-0.2 -2,-0.1 0.707 105.4 48.9 -75.8 -20.0 -9.0 3.6 -0.6 132 132 A E H >> S+ 0 0 103 -4,-0.3 4,-1.5 -5,-0.2 3,-0.5 0.893 111.2 45.6 -84.6 -45.5 -11.2 2.0 -3.2 133 133 A Q H 3< S+ 0 0 61 -4,-0.8 4,-0.3 1,-0.2 -2,-0.2 0.587 107.8 62.8 -73.6 -9.5 -12.1 5.1 -5.3 134 134 A L H 3< S+ 0 0 0 -4,-0.6 4,-0.3 2,-0.1 -1,-0.2 0.787 103.0 46.8 -84.3 -30.5 -8.4 6.0 -5.1 135 135 A L H X< S+ 0 0 15 -3,-0.5 3,-2.9 -4,-0.5 4,-0.4 0.951 99.3 64.1 -75.7 -52.7 -7.2 2.9 -7.0 136 136 A Q G >< S+ 0 0 75 -4,-1.5 3,-2.1 1,-0.3 4,-0.5 0.744 87.6 78.4 -43.1 -24.7 -9.8 3.1 -9.9 137 137 A L G >> S+ 0 0 4 1,-0.3 3,-2.4 -4,-0.3 4,-0.7 0.891 81.6 62.1 -53.6 -42.7 -8.0 6.3 -10.6 138 138 A W G <4 S+ 0 0 4 -3,-2.9 -1,-0.3 -4,-0.3 3,-0.3 0.703 97.1 61.0 -57.7 -18.5 -5.2 4.3 -12.3 139 139 A E G <4 S+ 0 0 167 -3,-2.1 -1,-0.3 -4,-0.4 -2,-0.2 0.665 96.3 58.5 -82.3 -17.9 -7.8 3.2 -14.7 140 140 A R T <4 0 0 167 -3,-2.4 -1,-0.2 -4,-0.5 -2,-0.2 0.618 360.0 360.0 -84.9 -14.4 -8.4 6.8 -15.8 141 141 A L < 0 0 90 -4,-0.7 -1,-0.0 -3,-0.3 -44,-0.0 -0.543 360.0 360.0 -71.3 360.0 -4.8 7.1 -16.9