==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=6-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER SIGNALING PROTEIN 06-APR-07 2YUC . COMPND 2 MOLECULE: TNF RECEPTOR-ASSOCIATED FACTOR 4; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR F.HAYASHI,T.SUETAKE,S.YOKOYAMA,RIKEN STRUCTURAL . 76 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6618.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 19 25.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 2 2.6 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 3 3.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 5 6.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 7 9.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 138 0, 0.0 2,-0.5 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 161.9 -8.2 -15.3 -9.6 2 2 A S + 0 0 126 2,-0.0 2,-0.3 3,-0.0 0, 0.0 -0.848 360.0 132.2-128.5 96.0 -5.3 -13.5 -8.0 3 3 A S + 0 0 130 -2,-0.5 3,-0.1 3,-0.0 0, 0.0 -0.999 46.1 46.8-146.0 140.1 -2.6 -12.2 -10.4 4 4 A G S S- 0 0 52 -2,-0.3 3,-0.1 1,-0.1 -2,-0.0 -0.210 75.9-130.9 127.0 -43.7 -0.8 -8.8 -10.8 5 5 A S + 0 0 130 1,-0.2 2,-0.3 0, 0.0 -1,-0.1 0.962 69.9 101.2 59.1 55.0 0.2 -8.0 -7.2 6 6 A S S S- 0 0 99 -3,-0.1 -1,-0.2 1,-0.1 -3,-0.0 -0.915 78.9 -44.8-153.9 177.8 -1.1 -4.5 -7.4 7 7 A G - 0 0 80 -2,-0.3 2,-0.3 -3,-0.1 -1,-0.1 -0.126 56.3-158.0 -50.9 144.8 -4.0 -2.2 -6.3 8 8 A H - 0 0 170 1,-0.3 -1,-0.1 -3,-0.0 0, 0.0 -0.828 24.3 -82.0-125.5 164.3 -7.5 -3.7 -6.9 9 9 A L - 0 0 147 -2,-0.3 2,-0.3 1,-0.1 -1,-0.3 0.206 43.8-130.1 -50.5-177.9 -11.0 -2.3 -7.2 10 10 A N - 0 0 138 15,-0.0 2,-0.1 3,-0.0 -1,-0.1 -0.993 10.8-148.4-146.4 135.7 -13.1 -1.4 -4.2 11 11 A T - 0 0 131 -2,-0.3 2,-0.9 1,-0.0 0, 0.0 -0.328 32.0 -99.9 -93.7 178.8 -16.6 -2.2 -3.1 12 12 A C - 0 0 120 -2,-0.1 -1,-0.0 2,-0.0 -2,-0.0 -0.688 44.0-163.3-103.2 79.3 -19.2 -0.2 -1.1 13 13 A S - 0 0 60 -2,-0.9 2,-0.3 13,-0.1 3,-0.2 -0.061 4.4-150.6 -56.3 161.9 -18.9 -1.7 2.4 14 14 A F + 0 0 176 1,-0.2 3,-0.1 3,-0.0 -1,-0.1 -0.962 64.9 22.8-138.4 154.9 -21.6 -1.0 4.9 15 15 A N S S+ 0 0 158 -2,-0.3 2,-0.2 1,-0.2 -1,-0.2 0.913 98.0 112.6 57.3 45.3 -21.9 -0.7 8.7 16 16 A V - 0 0 42 -3,-0.2 -1,-0.2 12,-0.1 12,-0.2 -0.743 61.2-117.6-134.7-177.7 -18.2 0.1 9.0 17 17 A I - 0 0 58 -2,-0.2 10,-1.4 -3,-0.1 11,-0.3 -0.959 26.4-110.7-130.1 147.3 -15.9 3.0 9.9 18 18 A P B -A 26 0A 84 0, 0.0 8,-0.2 0, 0.0 10,-0.1 -0.219 41.5 -93.9 -69.8 161.9 -13.3 5.0 8.0 19 19 A C > - 0 0 11 4,-0.7 3,-1.3 6,-0.6 4,-0.1 -0.607 19.6-144.8 -81.8 135.4 -9.5 4.8 8.6 20 20 A P T 3 S+ 0 0 85 0, 0.0 -1,-0.1 0, 0.0 12,-0.0 0.707 95.3 74.4 -69.8 -20.5 -8.0 7.3 11.0 21 21 A N T 3 S- 0 0 32 2,-0.1 -2,-0.0 1,-0.1 19,-0.0 0.610 114.0-114.4 -68.5 -10.8 -4.9 7.4 8.9 22 22 A R < + 0 0 185 -3,-1.3 -1,-0.1 1,-0.3 0, 0.0 0.691 69.5 143.3 83.3 20.7 -6.8 9.4 6.4 23 23 A C - 0 0 9 2,-0.2 2,-3.0 -4,-0.1 -4,-0.7 -0.722 64.4-110.9 -96.6 144.0 -6.6 6.6 3.8 24 24 A P S S+ 0 0 113 0, 0.0 2,-0.3 0, 0.0 -1,-0.1 -0.324 86.2 97.5 -69.8 64.3 -9.5 5.7 1.4 25 25 A M - 0 0 88 -2,-3.0 -6,-0.6 -6,-0.1 2,-0.4 -0.910 51.6-165.1-157.6 125.5 -10.2 2.4 3.2 26 26 A K B +A 18 0A 103 -2,-0.3 -13,-0.1 -8,-0.2 6,-0.0 -0.891 16.8 160.0-114.6 143.6 -12.7 1.3 5.8 27 27 A L - 0 0 31 -10,-1.4 2,-0.3 -2,-0.4 -1,-0.1 0.646 45.4-100.2-121.0 -70.1 -12.8 -1.8 7.9 28 28 A S - 0 0 21 -11,-0.3 -1,-0.2 -12,-0.2 4,-0.2 -0.977 42.3 -63.6 165.6-169.6 -14.9 -1.6 11.0 29 29 A R S S+ 0 0 216 -2,-0.3 -13,-0.0 1,-0.1 0, 0.0 0.006 129.3 36.0 -94.9 27.9 -14.9 -1.0 14.8 30 30 A R S S+ 0 0 173 0, 0.0 -1,-0.1 0, 0.0 4,-0.1 0.468 113.1 49.1-142.8 -42.0 -12.8 -4.1 15.4 31 31 A D S S+ 0 0 58 1,-0.2 3,-0.4 2,-0.1 -2,-0.1 0.304 86.6 94.5 -88.7 8.7 -10.4 -4.5 12.5 32 32 A L S >> S+ 0 0 24 1,-0.2 3,-1.6 -4,-0.2 4,-1.6 0.947 84.6 46.2 -64.1 -50.1 -9.3 -0.9 12.9 33 33 A P T 34 S+ 0 0 101 0, 0.0 -1,-0.2 0, 0.0 -2,-0.1 0.568 113.2 52.9 -69.7 -8.3 -6.4 -1.8 15.2 34 34 A A T 34 S+ 0 0 48 -3,-0.4 4,-0.3 2,-0.1 -2,-0.2 0.287 107.5 50.8-108.5 6.5 -5.4 -4.5 12.7 35 35 A H T <> S+ 0 0 4 -3,-1.6 4,-1.7 2,-0.1 5,-0.3 0.735 105.1 50.3-109.8 -39.9 -5.4 -2.2 9.7 36 36 A L T < S+ 0 0 55 -4,-1.6 -2,-0.1 3,-0.2 -4,-0.1 0.512 107.5 61.5 -78.1 -4.3 -3.2 0.7 10.9 37 37 A Q T 4 S- 0 0 124 -5,-0.2 -1,-0.2 18,-0.0 -2,-0.1 0.951 137.3 -29.9 -84.5 -62.2 -0.6 -1.9 11.9 38 38 A H T 4 S+ 0 0 67 -4,-0.3 19,-0.4 18,-0.1 -2,-0.2 0.029 130.7 68.1-148.7 28.3 0.2 -3.7 8.6 39 39 A D S < S+ 0 0 103 -4,-1.7 -3,-0.2 16,-0.1 -4,-0.1 0.209 75.4 98.3-132.6 9.8 -3.0 -3.4 6.6 40 40 A C > - 0 0 3 -5,-0.3 3,-0.7 1,-0.1 4,-0.1 -0.878 55.4-157.1-107.5 133.1 -3.0 0.3 5.9 41 41 A P T 3 S+ 0 0 67 0, 0.0 3,-0.4 0, 0.0 4,-0.3 0.947 98.2 40.1 -69.8 -51.1 -1.8 1.9 2.7 42 42 A K T 3 S+ 0 0 120 1,-0.2 -6,-0.0 2,-0.1 -2,-0.0 0.074 73.7 135.4 -87.3 24.9 -1.1 5.4 4.1 43 43 A R S < S- 0 0 29 -3,-0.7 -1,-0.2 1,-0.1 12,-0.0 0.726 73.2-120.6 -45.0 -21.9 0.3 3.8 7.2 44 44 A R + 0 0 185 -3,-0.4 2,-0.3 1,-0.2 -1,-0.1 0.968 66.3 134.1 76.7 58.5 3.1 6.4 6.7 45 45 A L + 0 0 60 -4,-0.3 9,-1.7 9,-0.2 2,-0.4 -0.851 25.0 174.3-144.0 104.0 6.1 4.1 6.4 46 46 A K - 0 0 118 -2,-0.3 7,-0.2 7,-0.2 5,-0.0 -0.885 35.4-106.0-112.7 142.1 8.7 4.6 3.7 47 47 A C - 0 0 3 -2,-0.4 6,-0.1 5,-0.3 -1,-0.1 -0.209 16.4-137.7 -60.9 152.5 12.0 2.6 3.3 48 48 A E S S+ 0 0 139 3,-0.1 -1,-0.1 2,-0.1 15,-0.0 0.520 99.4 29.8 -89.1 -7.2 15.2 4.4 4.2 49 49 A F S S+ 0 0 102 3,-0.1 20,-0.1 23,-0.0 14,-0.0 0.728 133.4 22.1-112.0 -74.8 16.9 3.0 1.1 50 50 A C S S- 0 0 20 2,-0.1 -2,-0.1 22,-0.1 19,-0.1 0.709 92.0-143.9 -70.6 -20.0 14.6 2.3 -1.8 51 51 A G + 0 0 15 1,-0.2 2,-0.4 17,-0.1 -3,-0.1 0.974 46.0 141.8 53.1 65.2 12.2 4.8 -0.3 52 52 A C - 0 0 60 -7,-0.0 -5,-0.3 0, 0.0 -1,-0.2 -0.938 57.2-106.6-142.0 115.9 8.9 3.1 -1.3 53 53 A D + 0 0 112 -2,-0.4 2,-0.3 -7,-0.2 -7,-0.2 0.043 49.4 171.7 -36.3 140.9 5.8 2.9 0.9 54 54 A F - 0 0 61 -9,-1.7 -9,-0.2 -13,-0.1 -11,-0.1 -0.913 28.3-105.4-149.0 174.0 5.3 -0.6 2.4 55 55 A S > - 0 0 56 -2,-0.3 4,-2.1 -17,-0.1 5,-0.1 -0.199 38.0-100.2 -93.7-172.1 3.2 -2.5 4.9 56 56 A G H > S+ 0 0 11 2,-0.2 4,-0.5 1,-0.2 -18,-0.1 0.775 120.8 52.3 -81.8 -27.6 4.0 -3.8 8.3 57 57 A E H > S+ 0 0 135 -19,-0.4 4,-0.7 2,-0.1 -1,-0.2 0.706 121.0 33.6 -79.8 -21.1 4.7 -7.4 7.2 58 58 A A H > S+ 0 0 33 2,-0.2 4,-2.5 3,-0.1 5,-0.3 0.869 109.7 58.7 -97.5 -54.4 7.2 -6.1 4.5 59 59 A Y H < S+ 0 0 27 -4,-2.1 4,-0.3 1,-0.2 -3,-0.2 0.745 110.0 52.1 -48.6 -23.6 8.8 -3.1 6.1 60 60 A E H >< S+ 0 0 145 -4,-0.5 3,-0.9 2,-0.2 4,-0.2 0.973 120.5 26.6 -77.9 -62.0 9.8 -5.5 8.8 61 61 A S H 3X S+ 0 0 82 -4,-0.7 4,-0.6 1,-0.2 -2,-0.2 0.449 117.3 66.4 -81.0 -0.2 11.5 -8.3 6.7 62 62 A H T 3< S+ 0 0 20 -4,-2.5 -1,-0.2 2,-0.2 -3,-0.2 0.559 77.6 81.2 -94.9 -11.8 12.3 -5.6 4.1 63 63 A E T <4 S+ 0 0 81 -3,-0.9 3,-0.2 -5,-0.3 -1,-0.2 0.787 108.9 25.8 -63.9 -27.4 14.7 -3.8 6.4 64 64 A G T 4 S+ 0 0 58 -4,-0.2 2,-0.5 -3,-0.2 -1,-0.2 0.650 122.2 54.3-108.1 -23.0 17.3 -6.3 5.5 65 65 A M S < S+ 0 0 153 -4,-0.6 -1,-0.2 4,-0.0 -2,-0.1 -0.579 72.3 157.7-112.9 67.7 16.1 -7.4 2.1 66 66 A C > - 0 0 22 -2,-0.5 3,-0.7 -3,-0.2 -3,-0.1 -0.752 38.9-147.7 -95.7 137.5 15.8 -4.1 0.2 67 67 A P T 3 S+ 0 0 81 0, 0.0 2,-0.2 0, 0.0 3,-0.2 0.819 99.4 36.2 -69.8 -32.3 15.8 -3.9 -3.6 68 68 A Q T 3 + 0 0 83 1,-0.1 -17,-0.1 2,-0.1 0, 0.0 -0.541 66.9 147.7-121.9 65.0 17.5 -0.5 -3.6 69 69 A E S < S- 0 0 138 -3,-0.7 -1,-0.1 -2,-0.2 3,-0.1 0.853 89.9 -2.3 -65.8 -35.4 19.9 -0.7 -0.6 70 70 A S S S+ 0 0 107 -3,-0.2 -2,-0.1 1,-0.1 -1,-0.0 0.680 112.5 82.5-118.7 -68.4 22.3 1.6 -2.5 71 71 A S + 0 0 90 -4,-0.1 -1,-0.1 1,-0.1 0, 0.0 -0.149 61.2 170.6 -46.0 128.4 21.2 2.5 -6.0 72 72 A G - 0 0 51 1,-0.2 -1,-0.1 2,-0.1 -22,-0.1 -0.479 34.4 -46.3-126.9-162.1 18.8 5.4 -5.7 73 73 A P - 0 0 99 0, 0.0 3,-0.3 0, 0.0 -1,-0.2 -0.249 46.1-122.8 -69.8 159.2 16.9 8.0 -7.9 74 74 A S S S+ 0 0 137 1,-0.3 2,-0.7 2,-0.0 -2,-0.1 0.998 99.4 17.7 -65.5 -67.6 18.6 10.0 -10.7 75 75 A S 0 0 119 1,-0.2 -1,-0.3 -3,-0.0 0, 0.0 -0.854 360.0 360.0-112.8 97.0 17.8 13.5 -9.5 76 76 A G 0 0 106 -2,-0.7 -1,-0.2 -3,-0.3 -2,-0.0 0.312 360.0 360.0 150.4 360.0 16.8 13.6 -5.8