==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=6-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER SIGNALING PROTEIN 06-APR-07 2YUO . COMPND 2 MOLECULE: RUN AND TBC1 DOMAIN CONTAINING 3; . SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; . AUTHOR H.ABE,N.TOCHIO,K.MIYAMOTO,K.SAITO,A.SASAGAWA,S.KOSHIBA, . 78 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6522.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 47 60.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 2 2.6 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 24 30.8 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 2 2.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 13 16.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 5 6.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 1 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 128 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0-103.8 10.5 -19.8 -5.2 2 2 A S - 0 0 123 1,-0.0 2,-0.3 0, 0.0 0, 0.0 -0.126 360.0-171.2 -66.8 167.9 11.9 -17.7 -2.4 3 3 A S + 0 0 107 3,-0.0 2,-0.2 0, 0.0 3,-0.0 -0.988 21.4 120.7-159.0 157.8 9.9 -16.7 0.6 4 4 A G - 0 0 75 -2,-0.3 2,-0.4 0, 0.0 0, 0.0 -0.736 61.9 -1.5-177.1-131.6 10.0 -14.5 3.7 5 5 A S - 0 0 131 -2,-0.2 2,-0.4 0, 0.0 0, 0.0 -0.729 54.9-159.9 -91.8 135.6 8.0 -11.6 5.3 6 6 A S + 0 0 117 -2,-0.4 2,-0.1 -3,-0.0 -3,-0.0 -0.955 11.3 178.6-118.9 131.2 5.0 -10.2 3.5 7 7 A G - 0 0 56 -2,-0.4 2,-0.2 1,-0.2 28,-0.1 -0.028 32.0 -75.2-106.3-149.5 3.4 -6.8 4.1 8 8 A R E -A 34 0A 127 26,-1.2 26,-1.8 -2,-0.1 2,-0.3 -0.647 30.9-153.8-111.6 169.7 0.5 -4.8 2.7 9 9 A R E -AB 33 62A 125 53,-0.6 53,-0.6 24,-0.3 2,-0.4 -0.966 2.1-160.3-149.0 128.4 -0.0 -2.9 -0.5 10 10 A A E -AB 32 61A 0 22,-2.6 22,-1.9 -2,-0.3 2,-0.5 -0.897 16.4-133.6-112.1 138.1 -2.3 0.0 -1.3 11 11 A K E -AB 31 60A 61 49,-2.5 49,-2.3 -2,-0.4 2,-0.3 -0.761 22.8-122.8 -91.9 130.1 -3.4 1.0 -4.8 12 12 A A E - B 0 59A 0 18,-2.8 17,-2.0 -2,-0.5 47,-0.2 -0.523 17.5-166.7 -72.8 131.1 -3.2 4.7 -5.7 13 13 A L S S+ 0 0 72 45,-1.8 2,-0.3 -2,-0.3 46,-0.2 0.694 72.4 1.4 -89.0 -22.4 -6.5 6.2 -6.8 14 14 A L S S- 0 0 66 44,-0.6 2,-0.4 13,-0.1 16,-0.2 -0.928 90.0 -73.5-153.8 175.5 -4.9 9.4 -8.2 15 15 A D - 0 0 85 -2,-0.3 2,-0.5 13,-0.1 12,-0.2 -0.636 41.4-171.8 -81.4 130.8 -1.5 11.1 -8.8 16 16 A F B -F 26 0B 30 10,-3.0 10,-1.9 -2,-0.4 2,-1.0 -0.935 10.6-157.7-128.8 109.4 0.1 12.5 -5.7 17 17 A E - 0 0 132 -2,-0.5 7,-0.1 8,-0.2 6,-0.0 -0.742 25.6-127.9 -88.9 102.0 3.2 14.7 -6.1 18 18 A R - 0 0 113 -2,-1.0 7,-0.1 1,-0.1 3,-0.1 -0.206 18.4-164.1 -49.6 127.9 5.1 14.6 -2.8 19 19 A H S S+ 0 0 167 1,-0.1 2,-0.3 5,-0.1 -1,-0.1 0.887 72.8 40.4 -82.9 -43.5 5.7 18.1 -1.6 20 20 A D S > S- 0 0 75 1,-0.1 3,-1.8 4,-0.0 -1,-0.1 -0.814 87.0-116.2-109.2 149.0 8.4 17.3 1.0 21 21 A D T 3 S+ 0 0 114 -2,-0.3 -1,-0.1 1,-0.3 -3,-0.1 0.785 119.6 57.2 -49.5 -28.8 11.2 14.7 0.8 22 22 A D T 3 S+ 0 0 90 30,-0.1 31,-1.4 2,-0.1 -1,-0.3 0.815 90.7 87.5 -73.2 -31.5 9.4 12.9 3.6 23 23 A E B < S-c 53 0A 37 -3,-1.8 2,-0.7 29,-0.2 31,-0.2 -0.469 76.0-136.8 -72.0 138.5 6.2 12.7 1.6 24 24 A L - 0 0 4 29,-3.2 2,-0.1 -2,-0.2 -1,-0.1 -0.862 21.2-161.1-101.6 112.0 5.8 9.6 -0.7 25 25 A G + 0 0 10 -2,-0.7 2,-0.3 -7,-0.1 -8,-0.2 -0.303 12.5 172.8 -84.9 172.3 4.5 10.4 -4.1 26 26 A F B -F 16 0B 0 -10,-1.9 -10,-3.0 -2,-0.1 2,-0.2 -0.948 28.1-109.4-173.9 155.0 2.9 8.0 -6.6 27 27 A R > - 0 0 139 -2,-0.3 3,-1.1 -12,-0.2 -15,-0.2 -0.502 51.2 -78.7 -91.3 162.3 1.1 7.9 -10.0 28 28 A K T 3 S+ 0 0 120 1,-0.3 -15,-0.2 -2,-0.2 -1,-0.1 -0.377 118.6 14.3 -61.8 129.9 -2.6 7.0 -10.6 29 29 A N T 3 S+ 0 0 108 -17,-2.0 2,-0.3 1,-0.3 -1,-0.3 0.839 95.3 149.1 73.3 34.2 -3.1 3.3 -10.4 30 30 A D < - 0 0 43 -3,-1.1 -18,-2.8 -16,-0.2 2,-0.5 -0.772 44.7-129.2-102.7 146.6 0.3 2.7 -8.8 31 31 A I E -A 11 0A 81 -2,-0.3 2,-0.4 -20,-0.2 -20,-0.2 -0.829 26.1-178.9 -98.3 126.3 1.1 -0.1 -6.3 32 32 A I E -A 10 0A 0 -22,-1.9 -22,-2.6 -2,-0.5 2,-0.5 -0.986 23.7-132.7-128.9 126.5 2.8 0.8 -3.1 33 33 A T E -AD 9 46A 48 13,-1.5 13,-1.8 -2,-0.4 2,-0.6 -0.642 22.5-132.5 -79.2 121.4 3.9 -1.6 -0.4 34 34 A I E +AD 8 45A 7 -26,-1.8 -26,-1.2 -2,-0.5 11,-0.3 -0.631 32.4 168.6 -77.5 117.3 2.8 -0.5 3.1 35 35 A I E + 0 0 88 9,-2.7 2,-0.4 -2,-0.6 10,-0.2 0.921 69.0 4.9 -91.2 -63.9 5.8 -0.7 5.5 36 36 A S E - D 0 44A 75 8,-1.6 2,-1.8 9,-0.0 8,-0.8 -0.942 63.1-147.7-131.2 111.3 4.7 1.2 8.6 37 37 A Q - 0 0 58 -2,-0.4 6,-0.2 6,-0.2 5,-0.1 -0.550 11.5-166.6 -77.9 83.2 1.2 2.6 9.0 38 38 A K - 0 0 141 -2,-1.8 2,-0.3 1,-0.1 5,-0.2 0.845 66.8 -32.2 -35.1 -48.6 2.0 5.6 11.1 39 39 A D S S- 0 0 99 3,-3.0 -1,-0.1 -3,-0.1 -3,-0.0 -0.948 71.5 -80.3-162.7 178.4 -1.7 6.0 11.7 40 40 A E S S+ 0 0 172 -2,-0.3 3,-0.1 1,-0.2 -2,-0.1 0.514 132.2 35.5 -68.6 -2.8 -5.2 5.4 10.3 41 41 A H S S+ 0 0 145 1,-0.3 15,-1.9 15,-0.1 2,-0.5 0.720 118.4 45.2-115.2 -46.3 -4.6 8.7 8.4 42 42 A C E - E 0 55A 28 13,-0.2 -3,-3.0 14,-0.1 -1,-0.3 -0.913 67.9-178.5-108.8 122.9 -0.9 8.7 7.6 43 43 A W E - E 0 54A 26 11,-2.7 11,-1.3 -2,-0.5 2,-0.5 -0.839 18.7-142.8-118.7 156.2 0.7 5.6 6.1 44 44 A V E +DE 36 53A 28 -8,-0.8 -9,-2.7 -2,-0.3 -8,-1.6 -0.939 30.1 160.8-123.3 110.7 4.2 4.7 5.1 45 45 A G E -DE 34 52A 0 7,-1.1 7,-0.8 -2,-0.5 2,-0.4 -0.436 34.6-107.7-114.5-170.1 4.8 2.6 2.0 46 46 A E E +DE 33 51A 62 -13,-1.8 -13,-1.5 5,-0.2 2,-0.3 -0.985 39.0 152.8-128.0 133.2 7.6 1.8 -0.5 47 47 A L E > + E 0 50A 26 3,-1.9 3,-1.4 -2,-0.4 -22,-0.1 -0.941 66.9 1.1-159.9 134.6 7.9 2.8 -4.1 48 48 A N T 3 S- 0 0 139 -2,-0.3 3,-0.1 1,-0.3 -1,-0.0 0.848 129.1 -58.2 56.7 35.2 10.7 3.5 -6.5 49 49 A G T 3 S+ 0 0 65 1,-0.3 2,-0.3 0, 0.0 -1,-0.3 0.751 115.6 118.6 67.6 23.4 13.1 2.5 -3.8 50 50 A L E < - E 0 47A 86 -3,-1.4 -3,-1.9 2,-0.0 2,-0.4 -0.832 49.4-157.3-120.6 159.2 11.7 5.3 -1.6 51 51 A R E + E 0 46A 180 -2,-0.3 2,-0.3 -5,-0.2 -5,-0.2 -0.912 31.1 133.8-141.1 110.8 10.0 5.3 1.8 52 52 A G E - E 0 45A 6 -7,-0.8 -7,-1.1 -2,-0.4 -29,-0.2 -0.942 49.1 -92.8-149.3 169.9 7.7 8.1 2.9 53 53 A W E +cE 23 44A 104 -31,-1.4 -29,-3.2 -2,-0.3 -9,-0.2 -0.342 41.2 167.6 -82.1 166.4 4.4 9.0 4.5 54 54 A F E - E 0 43A 0 -11,-1.3 -11,-2.7 -31,-0.2 2,-0.5 -0.937 42.8 -84.8-175.0 152.5 1.1 9.7 2.6 55 55 A P E >> - E 0 42A 7 0, 0.0 3,-1.6 0, 0.0 4,-0.7 -0.531 28.5-151.9 -69.8 113.6 -2.6 10.1 3.1 56 56 A A G >4 S+ 0 0 11 -15,-1.9 3,-1.5 -2,-0.5 -14,-0.1 0.850 94.5 67.3 -52.9 -36.6 -4.3 6.7 3.0 57 57 A K G 34 S+ 0 0 158 -16,-0.4 -1,-0.3 1,-0.3 -44,-0.1 0.855 93.6 58.3 -53.2 -37.1 -7.4 8.4 1.6 58 58 A F G <4 S+ 0 0 56 -3,-1.6 -45,-1.8 -46,-0.1 -44,-0.6 0.785 116.3 36.0 -64.5 -27.2 -5.5 9.2 -1.6 59 59 A V E << S-B 12 0A 2 -3,-1.5 2,-0.4 -4,-0.7 -47,-0.2 -0.580 80.9-122.7-117.5-178.8 -4.9 5.4 -2.0 60 60 A E E -B 11 0A 101 -49,-2.3 -49,-2.5 -2,-0.2 2,-0.1 -0.980 21.3-118.5-131.6 142.2 -6.8 2.2 -1.3 61 61 A V E -B 10 0A 62 -2,-0.4 2,-0.4 -51,-0.3 -51,-0.2 -0.372 22.7-157.4 -75.2 155.3 -6.0 -0.9 0.8 62 62 A L E +B 9 0A 60 -53,-0.6 -53,-0.6 -2,-0.1 2,-0.5 -0.945 15.1 177.7-140.6 116.6 -5.7 -4.3 -0.8 63 63 A D + 0 0 141 -2,-0.4 2,-0.2 -55,-0.1 -55,-0.0 -0.705 24.0 155.3-119.2 78.8 -6.1 -7.6 1.1 64 64 A E - 0 0 121 -2,-0.5 2,-0.4 0, 0.0 -2,-0.1 -0.617 31.7-144.6-101.9 162.9 -5.7 -10.4 -1.5 65 65 A R + 0 0 182 -2,-0.2 3,-0.3 3,-0.0 2,-0.2 -0.943 21.9 173.7-133.4 112.3 -4.6 -14.0 -1.0 66 66 A S + 0 0 89 -2,-0.4 3,-0.2 1,-0.2 0, 0.0 -0.615 61.1 20.3-110.9 171.9 -2.5 -15.9 -3.6 67 67 A K S S- 0 0 149 -2,-0.2 2,-0.7 1,-0.2 -1,-0.2 0.858 78.4-172.7 34.6 54.3 -0.8 -19.3 -3.6 68 68 A E + 0 0 122 -3,-0.3 -1,-0.2 1,-0.2 -3,-0.0 -0.679 32.9 124.8 -81.1 112.6 -3.1 -20.4 -0.9 69 69 A Y + 0 0 184 -2,-0.7 -1,-0.2 -3,-0.2 -2,-0.1 0.581 59.5 62.2-130.1 -58.4 -2.1 -23.9 0.3 70 70 A S S S+ 0 0 136 1,-0.0 2,-0.4 2,-0.0 -2,-0.1 0.809 109.7 52.7 -44.2 -33.6 -1.5 -23.9 4.1 71 71 A I S S+ 0 0 98 2,-0.0 2,-0.3 0, 0.0 -1,-0.0 -0.885 71.3 131.4-110.9 139.0 -5.1 -23.0 4.4 72 72 A A - 0 0 90 -2,-0.4 2,-0.2 0, 0.0 -3,-0.1 -0.972 45.4-106.1-173.1 164.3 -8.0 -24.9 2.7 73 73 A S + 0 0 126 -2,-0.3 3,-0.1 1,-0.1 -2,-0.0 -0.641 37.7 149.1-101.6 159.9 -11.4 -26.5 3.3 74 74 A G + 0 0 55 -2,-0.2 2,-1.7 1,-0.1 -1,-0.1 0.119 57.9 46.2-146.0 -93.5 -12.4 -30.1 3.5 75 75 A P + 0 0 127 0, 0.0 2,-0.7 0, 0.0 -1,-0.1 -0.484 66.4 169.9 -69.7 86.7 -15.2 -31.7 5.5 76 76 A S S S- 0 0 85 -2,-1.7 -3,-0.0 2,-0.3 0, 0.0 -0.892 71.1 -35.8-106.9 111.3 -18.0 -29.3 4.6 77 77 A S 0 0 134 -2,-0.7 -1,-0.2 1,-0.1 0, 0.0 0.866 360.0 360.0 45.1 42.3 -21.5 -30.5 5.7 78 78 A G 0 0 107 -3,-0.0 -2,-0.3 0, 0.0 -1,-0.1 0.508 360.0 360.0 139.7 360.0 -20.4 -34.0 5.0