==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=6-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER CELL ADHESION 06-APR-07 2YUP . COMPND 2 MOLECULE: VINEXIN; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR H.ABE,N.TOCHIO,K.MIYAMOTO,K.SAITO,A.SASAGAWA,S.KOSHIBA, . 90 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7252.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 43 47.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 2 2.2 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 17 18.9 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 10 11.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 6 6.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 2 2.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 123 0, 0.0 5,-0.1 0, 0.0 3,-0.0 0.000 360.0 360.0 360.0 87.5 12.4 -15.7 -9.8 2 2 A S + 0 0 132 3,-0.1 2,-0.1 0, 0.0 4,-0.1 0.830 360.0 40.9-100.2 -47.1 13.3 -13.4 -12.7 3 3 A S S S- 0 0 91 2,-0.2 0, 0.0 1,-0.1 0, 0.0 -0.449 85.3-111.6 -97.8 173.1 17.1 -13.5 -12.6 4 4 A G S S+ 0 0 79 -2,-0.1 -1,-0.1 -3,-0.0 2,-0.1 0.973 96.9 66.1 -68.6 -56.2 19.5 -16.3 -11.9 5 5 A S + 0 0 107 -3,-0.0 -2,-0.2 -4,-0.0 2,-0.2 -0.387 61.2 154.9 -69.3 144.4 20.9 -15.2 -8.6 6 6 A S - 0 0 85 1,-0.1 -2,-0.0 -2,-0.1 0, 0.0 -0.776 25.6-173.6-173.5 124.4 18.5 -15.2 -5.6 7 7 A G + 0 0 80 -2,-0.2 -1,-0.1 2,-0.1 -2,-0.0 0.957 69.2 66.8 -85.3 -67.1 18.9 -15.4 -1.9 8 8 A K S S- 0 0 178 1,-0.1 3,-0.0 3,-0.0 0, 0.0 -0.209 93.9-101.3 -57.2 145.2 15.4 -15.6 -0.4 9 9 A P - 0 0 91 0, 0.0 2,-1.0 0, 0.0 -1,-0.1 -0.339 39.3 -96.4 -69.8 148.7 13.4 -18.8 -1.3 10 10 A P S S+ 0 0 126 0, 0.0 2,-0.3 0, 0.0 -4,-0.0 -0.529 73.6 125.4 -69.7 100.8 10.7 -18.7 -4.0 11 11 A T - 0 0 115 -2,-1.0 2,-0.7 -3,-0.0 3,-0.2 -0.971 60.8-114.9-152.8 164.4 7.4 -18.2 -2.1 12 12 A Y + 0 0 166 -2,-0.3 0, 0.0 1,-0.2 0, 0.0 -0.859 49.9 139.2-109.8 99.4 4.4 -16.0 -1.9 13 13 A Q > + 0 0 124 -2,-0.7 3,-3.2 2,-0.1 4,-0.3 0.649 47.6 93.4-108.3 -25.7 4.2 -14.0 1.3 14 14 A V G > + 0 0 43 1,-0.3 3,-1.3 -3,-0.2 -1,-0.1 0.789 62.8 90.1 -37.6 -34.1 3.1 -10.7 0.0 15 15 A L G 3 S+ 0 0 83 1,-0.3 -1,-0.3 4,-0.0 -2,-0.1 0.780 83.3 56.7 -35.3 -34.1 -0.4 -12.0 0.8 16 16 A E G < S+ 0 0 60 -3,-3.2 -1,-0.3 2,-0.1 -2,-0.2 0.946 93.8 78.3 -66.6 -50.1 0.3 -10.4 4.2 17 17 A Y S < S- 0 0 97 -3,-1.3 28,-0.2 -4,-0.3 2,-0.1 -0.048 93.3 -95.8 -55.6 162.4 0.9 -6.9 2.8 18 18 A G E -A 44 0A 3 26,-2.0 26,-0.8 56,-0.0 2,-0.4 -0.407 31.3-145.6 -82.1 160.1 -2.0 -4.7 1.8 19 19 A E E +AB 43 75A 73 56,-2.4 55,-2.2 24,-0.2 56,-2.2 -0.992 24.5 158.6-131.4 130.3 -3.3 -4.4 -1.8 20 20 A A E -AB 42 73A 0 22,-0.8 22,-0.7 -2,-0.4 2,-0.4 -0.972 26.7-140.5-146.2 158.8 -4.8 -1.4 -3.4 21 21 A V E -AB 41 72A 34 51,-2.1 51,-2.2 -2,-0.3 2,-0.4 -0.985 25.5-118.8-127.7 126.9 -5.5 0.0 -6.9 22 22 A A E + B 0 71A 1 18,-1.8 17,-2.4 -2,-0.4 49,-0.2 -0.457 32.6 173.6 -64.2 117.5 -5.1 3.7 -8.0 23 23 A Q + 0 0 75 47,-1.4 2,-0.4 -2,-0.4 48,-0.2 0.803 67.7 30.9 -93.7 -36.7 -8.5 4.9 -9.1 24 24 A Y S S- 0 0 149 46,-1.7 2,-0.5 13,-0.1 -1,-0.3 -0.981 87.8-109.8-128.5 137.6 -7.5 8.6 -9.6 25 25 A T - 0 0 101 -2,-0.4 12,-0.2 -3,-0.1 2,-0.1 -0.495 40.4-159.8 -66.8 113.7 -4.2 10.1 -10.7 26 26 A F - 0 0 24 10,-0.9 10,-0.4 -2,-0.5 2,-0.3 -0.455 5.5-153.7 -91.8 166.7 -2.8 11.9 -7.7 27 27 A K + 0 0 172 -2,-0.1 2,-0.3 8,-0.1 7,-0.1 -0.968 20.9 155.8-146.3 126.3 -0.1 14.6 -7.6 28 28 A G - 0 0 8 -2,-0.3 7,-0.2 5,-0.1 -2,-0.0 -0.998 25.7-174.2-151.5 148.6 2.3 15.6 -4.8 29 29 A D + 0 0 159 -2,-0.3 -1,-0.1 5,-0.1 6,-0.1 0.734 67.1 82.4-108.8 -38.3 5.7 17.3 -4.4 30 30 A L S S- 0 0 125 1,-0.1 3,-0.1 4,-0.1 -2,-0.0 -0.249 87.3-113.5 -67.3 157.5 6.4 16.7 -0.7 31 31 A E S S+ 0 0 175 1,-0.2 32,-0.2 3,-0.1 34,-0.1 0.972 117.4 50.1 -55.0 -61.0 7.9 13.5 0.6 32 32 A V S S+ 0 0 81 32,-0.2 33,-2.8 1,-0.1 2,-1.0 0.820 99.0 79.3 -48.1 -34.0 4.8 12.4 2.5 33 33 A E B S-c 65 0B 48 31,-0.2 2,-0.4 -3,-0.1 33,-0.2 -0.684 71.5-169.0 -82.9 101.6 2.8 13.2 -0.7 34 34 A L - 0 0 2 31,-2.0 2,-0.3 -2,-1.0 -5,-0.1 -0.761 8.2-145.5 -94.9 136.0 3.4 10.1 -2.9 35 35 A S + 0 0 18 -2,-0.4 2,-0.3 -7,-0.2 -8,-0.1 -0.707 21.7 170.2-100.3 151.4 2.3 10.3 -6.6 36 36 A F - 0 0 2 -10,-0.4 -10,-0.9 -2,-0.3 2,-0.4 -0.987 29.3-118.9-155.4 158.7 0.9 7.4 -8.6 37 37 A R > - 0 0 138 -2,-0.3 3,-2.5 -12,-0.2 -15,-0.3 -0.874 44.0 -93.4-107.0 134.3 -0.7 6.6 -12.0 38 38 A K T 3 S+ 0 0 135 -2,-0.4 -15,-0.2 1,-0.3 3,-0.1 -0.016 112.7 25.7 -40.4 140.5 -4.2 5.1 -12.3 39 39 A G T 3 S+ 0 0 44 -17,-2.4 -1,-0.3 1,-0.3 -16,-0.1 -0.097 90.4 128.5 92.6 -36.5 -4.1 1.3 -12.5 40 40 A E < - 0 0 79 -3,-2.5 -18,-1.8 -19,-0.1 2,-0.7 -0.103 60.2-126.2 -51.8 150.6 -0.7 1.1 -10.7 41 41 A H E -A 21 0A 114 -20,-0.2 2,-0.5 -3,-0.1 -20,-0.2 -0.877 21.0-158.9-108.2 104.3 -0.6 -1.3 -7.8 42 42 A I E -A 20 0A 3 -2,-0.7 2,-1.0 -22,-0.7 -22,-0.8 -0.696 13.8-136.1 -85.1 126.4 0.7 0.3 -4.6 43 43 A C E -A 19 0A 48 13,-1.0 2,-0.4 -2,-0.5 13,-0.2 -0.709 17.9-141.9 -85.3 102.4 2.1 -2.1 -2.0 44 44 A L E +A 18 0A 0 -2,-1.0 -26,-2.0 -26,-0.8 11,-0.3 -0.501 28.4 169.5 -67.3 116.9 0.6 -1.0 1.3 45 45 A I S S+ 0 0 41 9,-0.7 2,-0.4 -2,-0.4 33,-0.3 0.913 72.3 3.5 -92.1 -61.1 3.3 -1.4 4.0 46 46 A R S S- 0 0 155 31,-0.1 8,-0.2 8,-0.1 -1,-0.2 -0.773 75.5-140.0-133.1 88.9 2.0 0.3 7.1 47 47 A K - 0 0 65 -2,-0.4 6,-0.2 1,-0.2 3,-0.1 -0.242 10.0-160.6 -49.7 117.6 -1.6 1.7 6.7 48 48 A V - 0 0 74 4,-0.3 2,-0.3 1,-0.3 5,-0.2 0.934 61.3 -41.5 -68.2 -47.7 -1.6 5.1 8.4 49 49 A N - 0 0 64 3,-2.2 -1,-0.3 -3,-0.0 5,-0.0 -0.976 64.1 -79.9-170.3 172.9 -5.4 5.2 8.8 50 50 A E S S+ 0 0 149 -2,-0.3 3,-0.1 1,-0.2 18,-0.0 0.625 129.8 41.7 -60.7 -11.1 -8.7 4.5 7.1 51 51 A N S S+ 0 0 90 1,-0.3 17,-2.5 17,-0.1 2,-0.4 0.868 116.3 36.7 -98.7 -68.5 -8.1 7.9 5.4 52 52 A W E -D 67 0B 100 15,-0.2 -3,-2.2 16,-0.1 2,-0.4 -0.736 69.8-158.5 -92.6 136.0 -4.4 8.1 4.4 53 53 A Y E -D 66 0B 11 13,-3.0 13,-0.7 -2,-0.4 2,-0.3 -0.953 5.8-145.5-118.2 131.2 -2.6 4.9 3.1 54 54 A E E +D 65 0B 44 -2,-0.4 -9,-0.7 11,-0.2 2,-0.2 -0.694 38.5 121.0 -94.4 145.3 1.1 4.4 3.1 55 55 A G E -D 64 0B 0 9,-2.2 9,-1.0 -2,-0.3 2,-0.3 -0.839 45.0-103.8-168.3-154.5 3.0 2.5 0.5 56 56 A R E -D 63 0B 82 -2,-0.2 -13,-1.0 -13,-0.2 2,-0.7 -0.989 15.3-127.5-155.1 157.4 5.7 2.6 -2.2 57 57 A I >> - 0 0 3 5,-2.0 3,-2.2 -2,-0.3 4,-1.6 -0.662 31.3-149.0-110.5 75.4 6.0 2.7 -6.0 58 58 A T T 34 S+ 0 0 112 -2,-0.7 4,-0.0 1,-0.2 -2,-0.0 -0.104 81.0 33.3 -43.7 131.2 8.3 -0.2 -6.8 59 59 A G T 34 S+ 0 0 81 1,-0.0 -1,-0.2 3,-0.0 -2,-0.0 -0.186 122.8 42.9 112.7 -40.7 10.4 0.7 -9.9 60 60 A T T <4 S- 0 0 85 -3,-2.2 -2,-0.2 2,-0.1 -1,-0.0 0.816 96.4-127.3-103.1 -47.9 10.8 4.4 -9.3 61 61 A G < + 0 0 40 -4,-1.6 -3,-0.1 1,-0.3 -4,-0.1 -0.121 55.9 140.1 125.3 -37.2 11.5 4.7 -5.6 62 62 A R + 0 0 108 -5,-0.2 -5,-2.0 -6,-0.1 -1,-0.3 0.107 25.1 174.6 -36.1 152.4 8.9 7.2 -4.5 63 63 A Q E + D 0 56B 85 -32,-0.2 2,-0.3 -7,-0.2 -7,-0.2 -0.908 17.9 88.0-168.4 138.0 7.3 6.4 -1.1 64 64 A G E - D 0 55B 9 -9,-1.0 -9,-2.2 -2,-0.3 2,-0.2 -0.976 64.1 -48.3 167.5-154.8 4.8 8.0 1.2 65 65 A I E -cD 33 54B 35 -33,-2.8 -31,-2.0 -2,-0.3 -11,-0.2 -0.620 42.1-179.6-108.8 169.7 1.2 8.4 2.1 66 66 A F E - D 0 53B 0 -13,-0.7 -13,-3.0 -2,-0.2 2,-0.2 -0.985 35.7 -83.3-164.4 157.9 -1.9 9.2 0.0 67 67 A P E >> - D 0 52B 22 0, 0.0 4,-1.1 0, 0.0 3,-0.7 -0.462 27.8-146.1 -69.8 133.4 -5.7 9.8 0.2 68 68 A A G >4 S+ 0 0 18 -17,-2.5 3,-1.0 1,-0.2 -16,-0.1 0.961 96.2 65.8 -63.2 -53.6 -7.8 6.6 0.2 69 69 A S G 34 S+ 0 0 109 1,-0.3 -1,-0.2 -18,-0.2 -17,-0.1 0.744 104.6 51.0 -41.0 -25.2 -10.7 8.2 -1.7 70 70 A Y G <4 S+ 0 0 101 -3,-0.7 -46,-1.7 -47,-0.1 -47,-1.4 0.888 114.0 43.0 -81.8 -43.1 -8.1 8.4 -4.5 71 71 A V E << S-B 22 0A 7 -4,-1.1 2,-0.5 -3,-1.0 -49,-0.2 -0.485 85.3-114.3 -99.1 171.6 -7.0 4.8 -4.4 72 72 A Q E -B 21 0A 93 -51,-2.2 -51,-2.1 -2,-0.2 2,-0.5 -0.935 20.5-147.5-112.8 123.3 -9.0 1.6 -4.1 73 73 A V E +B 20 0A 45 -2,-0.5 -53,-0.2 -53,-0.2 3,-0.1 -0.775 34.3 148.6 -92.0 123.9 -8.7 -0.6 -1.0 74 74 A S E S+ 0 0 80 -55,-2.2 2,-0.4 -2,-0.5 -54,-0.2 0.679 72.5 25.1-118.9 -42.2 -9.1 -4.4 -1.6 75 75 A R E S-B 19 0A 78 -56,-2.2 -56,-2.4 0, 0.0 -1,-0.2 -0.867 75.0-148.8-133.2 99.9 -6.8 -6.0 1.0 76 76 A E - 0 0 124 -2,-0.4 -56,-0.0 -58,-0.2 -3,-0.0 -0.351 21.8-119.5 -67.1 144.1 -6.1 -4.1 4.2 77 77 A P - 0 0 22 0, 0.0 2,-0.3 0, 0.0 -60,-0.1 0.115 16.9-133.2 -69.7-170.7 -2.7 -4.7 5.8 78 78 A R + 0 0 153 -33,-0.3 -62,-0.0 -62,-0.1 -60,-0.0 -0.792 33.6 158.2-155.8 106.4 -2.0 -6.0 9.3 79 79 A L - 0 0 87 -2,-0.3 -1,-0.1 -32,-0.1 -33,-0.0 0.085 69.9 -97.8-114.5 20.5 0.5 -4.5 11.8 80 80 A R + 0 0 159 2,-0.1 3,-0.1 1,-0.0 -2,-0.1 0.957 69.6 153.4 62.9 52.7 -1.2 -6.0 14.9 81 81 A L - 0 0 148 1,-0.2 2,-0.3 0, 0.0 -3,-0.0 0.966 63.5 -5.2 -75.3 -56.6 -3.1 -2.9 15.8 82 82 A C - 0 0 90 2,-0.0 2,-0.4 0, 0.0 -1,-0.2 -0.812 60.8-127.3-133.6 173.7 -6.0 -4.4 17.7 83 83 A D - 0 0 110 -2,-0.3 2,-0.0 -3,-0.1 0, 0.0 -0.819 24.2-158.9-129.5 92.5 -7.4 -7.9 18.6 84 84 A D - 0 0 123 -2,-0.4 2,-0.9 1,-0.1 -2,-0.0 -0.341 26.2-110.9 -68.8 149.7 -11.0 -8.4 17.7 85 85 A S S S- 0 0 123 1,-0.3 -1,-0.1 2,-0.1 -2,-0.0 -0.734 85.8 -31.4 -87.0 107.3 -13.0 -11.1 19.5 86 86 A G S S+ 0 0 77 -2,-0.9 -1,-0.3 1,-0.1 3,-0.1 0.960 74.1 175.3 46.8 70.0 -13.8 -13.9 17.0 87 87 A P - 0 0 103 0, 0.0 2,-0.3 0, 0.0 -2,-0.1 0.922 64.4 -2.5 -69.8 -46.5 -14.0 -11.7 13.9 88 88 A S - 0 0 99 1,-0.1 -2,-0.1 2,-0.0 0, 0.0 -0.997 51.8-143.9-149.9 146.8 -14.5 -14.5 11.4 89 89 A S 0 0 139 -2,-0.3 -1,-0.1 -3,-0.1 -3,-0.0 0.902 360.0 360.0 -76.0 -43.6 -14.6 -18.3 11.5 90 90 A G 0 0 118 0, 0.0 -2,-0.0 0, 0.0 0, 0.0 0.564 360.0 360.0 108.4 360.0 -12.9 -18.8 8.1