==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=21-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER PROTEIN TRAFFICKING 22-FEB-05 1YXR . COMPND 2 MOLECULE: VACUOLAR PROTEIN SORTING FACTOR 4A; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR J.A.SCOTT,J.GASPAR,M.STUCHELL,S.ALAM,J.SKALICKY, . 77 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6283.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 67 87.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 2 2.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 4 5.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 59 76.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 1 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 240 0, 0.0 2,-0.5 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 -59.6 20.9 -3.4 -4.0 2 2 A T - 0 0 117 0, 0.0 2,-0.4 0, 0.0 0, 0.0 -0.895 360.0-132.8-108.7 132.1 18.2 -4.7 -6.3 3 3 A T - 0 0 87 -2,-0.5 2,-0.2 4,-0.1 3,-0.0 -0.683 28.4-175.1 -84.8 129.4 14.6 -3.4 -6.2 4 4 A S > - 0 0 69 -2,-0.4 4,-1.4 1,-0.1 5,-0.1 -0.540 39.1-103.8-114.0-178.9 11.9 -6.0 -6.3 5 5 A T H > S+ 0 0 57 2,-0.2 4,-0.9 -2,-0.2 37,-0.1 0.879 121.8 43.8 -73.5 -39.4 8.1 -6.0 -6.4 6 6 A L H > S+ 0 0 73 2,-0.2 4,-1.2 1,-0.2 -1,-0.2 0.841 111.7 54.2 -74.0 -34.5 7.7 -6.9 -2.7 7 7 A Q H > S+ 0 0 83 1,-0.2 4,-1.4 2,-0.2 -2,-0.2 0.866 105.5 53.0 -67.3 -37.3 10.4 -4.4 -1.7 8 8 A K H X S+ 0 0 78 -4,-1.4 4,-2.0 1,-0.2 -1,-0.2 0.814 104.6 56.5 -67.8 -30.7 8.6 -1.6 -3.5 9 9 A A H X S+ 0 0 0 -4,-0.9 4,-1.3 2,-0.2 -1,-0.2 0.842 106.0 49.8 -69.7 -34.2 5.4 -2.4 -1.6 10 10 A I H X S+ 0 0 77 -4,-1.2 4,-1.0 1,-0.2 -1,-0.2 0.840 114.6 43.8 -73.0 -34.2 7.1 -2.0 1.8 11 11 A D H X S+ 0 0 73 -4,-1.4 4,-1.8 2,-0.2 -2,-0.2 0.799 108.6 58.2 -80.0 -30.7 8.6 1.4 0.8 12 12 A L H X S+ 0 0 33 -4,-2.0 4,-1.0 1,-0.2 -2,-0.2 0.861 108.7 45.4 -66.8 -36.6 5.3 2.6 -0.8 13 13 A V H X S+ 0 0 10 -4,-1.3 4,-2.1 2,-0.2 -1,-0.2 0.804 110.7 53.9 -76.4 -30.8 3.5 2.1 2.5 14 14 A T H X S+ 0 0 67 -4,-1.0 4,-1.6 1,-0.2 -2,-0.2 0.853 108.1 49.3 -71.6 -35.8 6.3 3.8 4.5 15 15 A K H X S+ 0 0 103 -4,-1.8 4,-1.4 2,-0.2 -1,-0.2 0.805 112.1 49.3 -73.0 -30.2 6.1 6.9 2.3 16 16 A A H X S+ 0 0 0 -4,-1.0 4,-2.6 2,-0.2 -2,-0.2 0.917 108.9 50.4 -74.8 -45.7 2.4 7.1 2.7 17 17 A T H X S+ 0 0 59 -4,-2.1 4,-1.0 1,-0.2 -2,-0.2 0.914 114.2 44.9 -58.9 -45.0 2.3 6.8 6.5 18 18 A E H X S+ 0 0 94 -4,-1.6 4,-0.6 1,-0.2 -1,-0.2 0.862 112.5 52.3 -67.7 -36.4 4.9 9.5 6.9 19 19 A E H ><>S+ 0 0 37 -4,-1.4 5,-2.3 1,-0.2 3,-1.1 0.890 100.4 61.5 -66.9 -40.5 3.1 11.7 4.3 20 20 A D H ><5S+ 0 0 23 -4,-2.6 3,-0.9 1,-0.3 5,-0.2 0.865 104.7 48.9 -54.0 -38.5 -0.2 11.4 6.2 21 21 A K H 3<5S+ 0 0 186 -4,-1.0 -1,-0.3 1,-0.3 -2,-0.2 0.699 104.4 61.0 -75.0 -19.9 1.4 13.0 9.2 22 22 A A T <<5S- 0 0 55 -3,-1.1 -1,-0.3 -4,-0.6 -2,-0.2 0.016 123.1-102.2 -95.7 27.5 2.8 15.8 6.9 23 23 A K T < 5S+ 0 0 182 -3,-0.9 3,-0.2 1,-0.1 -3,-0.2 0.816 86.8 130.3 57.4 31.1 -0.8 16.8 5.9 24 24 A N >< + 0 0 51 -5,-2.3 4,-2.7 1,-0.2 3,-0.3 -0.291 11.3 144.3-109.0 46.1 -0.2 15.0 2.7 25 25 A Y H > S+ 0 0 54 1,-0.2 4,-1.3 -5,-0.2 -1,-0.2 0.833 73.0 56.2 -51.9 -34.7 -3.4 13.0 2.7 26 26 A E H > S+ 0 0 130 -3,-0.2 4,-1.0 2,-0.2 -1,-0.2 0.936 109.9 42.5 -64.5 -48.1 -3.5 13.4 -1.1 27 27 A E H > S+ 0 0 102 -3,-0.3 4,-2.5 1,-0.2 3,-0.4 0.889 109.4 58.4 -66.0 -40.3 -0.1 11.9 -1.6 28 28 A A H X S+ 0 0 0 -4,-2.7 4,-3.0 1,-0.2 5,-0.3 0.824 100.2 59.1 -59.0 -32.0 -0.8 9.1 0.9 29 29 A L H X S+ 0 0 19 -4,-1.3 4,-1.4 -5,-0.2 -1,-0.2 0.893 111.4 38.8 -64.6 -40.9 -3.8 8.1 -1.2 30 30 A R H X S+ 0 0 165 -4,-1.0 4,-1.8 -3,-0.4 -2,-0.2 0.817 118.1 49.8 -78.7 -32.6 -1.6 7.4 -4.2 31 31 A L H X S+ 0 0 33 -4,-2.5 4,-2.1 2,-0.2 -2,-0.2 0.943 114.6 41.9 -71.0 -49.8 1.2 5.9 -2.1 32 32 A Y H X S+ 0 0 18 -4,-3.0 4,-1.6 1,-0.2 -2,-0.2 0.883 116.0 50.5 -64.9 -39.7 -1.0 3.5 -0.2 33 33 A Q H X S+ 0 0 89 -4,-1.4 4,-1.1 -5,-0.3 -1,-0.2 0.888 109.9 50.2 -66.0 -40.3 -3.0 2.6 -3.4 34 34 A H H X S+ 0 0 84 -4,-1.8 4,-1.6 1,-0.2 3,-0.4 0.903 106.8 54.6 -65.1 -42.5 0.2 1.9 -5.3 35 35 A A H X S+ 0 0 0 -4,-2.1 4,-1.8 1,-0.2 -1,-0.2 0.887 104.7 54.1 -58.8 -41.1 1.6 -0.3 -2.6 36 36 A V H X S+ 0 0 7 -4,-1.6 4,-2.0 1,-0.2 -1,-0.2 0.817 105.2 55.0 -63.5 -31.1 -1.6 -2.5 -2.7 37 37 A E H X S+ 0 0 131 -4,-1.1 4,-1.7 -3,-0.4 -1,-0.2 0.873 108.7 46.5 -70.0 -38.3 -1.0 -2.9 -6.4 38 38 A Y H X S+ 0 0 78 -4,-1.6 4,-1.5 2,-0.2 -2,-0.2 0.822 110.7 54.1 -73.0 -32.3 2.5 -4.3 -6.0 39 39 A F H X S+ 0 0 5 -4,-1.8 4,-1.3 2,-0.2 -2,-0.2 0.962 110.6 43.1 -66.3 -53.9 1.3 -6.6 -3.2 40 40 A L H >X S+ 0 0 78 -4,-2.0 4,-2.3 1,-0.2 3,-0.6 0.918 113.6 52.1 -58.7 -46.1 -1.4 -8.3 -5.2 41 41 A H H 3X>S+ 0 0 94 -4,-1.7 4,-2.2 1,-0.2 5,-0.5 0.841 105.2 56.9 -59.9 -34.3 0.8 -8.6 -8.3 42 42 A A H 3X5S+ 0 0 4 -4,-1.5 4,-0.7 1,-0.2 -1,-0.2 0.821 109.5 45.4 -67.0 -31.8 3.5 -10.2 -6.1 43 43 A I H <<5S+ 0 0 14 -4,-1.3 -2,-0.2 -3,-0.6 -1,-0.2 0.905 111.9 49.8 -77.9 -44.7 1.0 -12.9 -5.1 44 44 A K H <5S+ 0 0 153 -4,-2.3 3,-0.3 -5,-0.1 -2,-0.2 0.953 128.5 22.0 -59.5 -52.6 -0.4 -13.6 -8.6 45 45 A Y H <5S+ 0 0 158 -4,-2.2 2,-1.5 1,-0.2 -3,-0.2 0.973 129.7 42.8 -79.1 -64.1 3.0 -14.0 -10.2 46 46 A E S < - 0 0 90 -2,-0.1 4,-2.9 1,-0.1 -1,-0.3 -0.016 61.6 -94.2 -62.7 174.3 3.4 -21.0 0.7 50 50 A D H > S+ 0 0 119 1,-0.2 4,-3.0 2,-0.2 5,-0.3 0.853 125.6 59.2 -60.4 -35.2 0.2 -20.4 2.6 51 51 A K H > S+ 0 0 190 2,-0.2 4,-1.6 1,-0.2 -1,-0.2 0.917 112.6 37.4 -60.0 -45.3 2.1 -18.5 5.2 52 52 A A H > S+ 0 0 25 -3,-0.2 4,-2.7 2,-0.2 5,-0.3 0.895 116.6 52.1 -73.9 -42.1 3.4 -16.0 2.7 53 53 A K H X S+ 0 0 93 -4,-2.9 4,-2.5 1,-0.2 -2,-0.2 0.929 114.8 41.6 -60.1 -47.4 0.1 -15.9 0.7 54 54 A E H X S+ 0 0 124 -4,-3.0 4,-1.9 -5,-0.2 -1,-0.2 0.863 113.9 53.9 -68.6 -37.1 -2.0 -15.2 3.8 55 55 A S H X S+ 0 0 57 -4,-1.6 4,-1.1 -5,-0.3 -2,-0.2 0.929 115.4 38.1 -63.2 -47.5 0.6 -12.7 5.1 56 56 A I H X S+ 0 0 18 -4,-2.7 4,-2.7 2,-0.2 5,-0.3 0.899 114.1 54.9 -71.3 -42.0 0.6 -10.7 1.9 57 57 A R H X S+ 0 0 142 -4,-2.5 4,-1.5 -5,-0.3 -1,-0.2 0.853 110.0 47.5 -59.7 -35.4 -3.2 -11.0 1.4 58 58 A A H X S+ 0 0 47 -4,-1.9 4,-1.2 2,-0.2 -1,-0.2 0.779 111.7 51.0 -76.5 -28.2 -3.7 -9.7 4.9 59 59 A K H X S+ 0 0 100 -4,-1.1 4,-2.1 2,-0.2 -2,-0.2 0.918 111.2 45.4 -75.0 -46.3 -1.3 -6.8 4.3 60 60 A C H X S+ 0 0 1 -4,-2.7 4,-2.2 1,-0.2 -2,-0.2 0.896 113.4 50.3 -64.5 -41.7 -2.9 -5.6 1.0 61 61 A V H X S+ 0 0 78 -4,-1.5 4,-1.2 -5,-0.3 -1,-0.2 0.857 111.1 49.4 -65.3 -35.9 -6.4 -5.9 2.4 62 62 A Q H X S+ 0 0 145 -4,-1.2 4,-1.2 2,-0.2 -1,-0.2 0.881 112.7 46.4 -70.8 -39.4 -5.4 -3.8 5.5 63 63 A Y H X S+ 0 0 57 -4,-2.1 4,-2.7 1,-0.2 5,-0.2 0.856 107.0 58.3 -71.0 -36.1 -3.8 -1.1 3.4 64 64 A L H X S+ 0 0 72 -4,-2.2 4,-1.1 1,-0.2 -1,-0.2 0.856 105.3 50.7 -61.9 -36.1 -6.7 -0.9 1.0 65 65 A D H X S+ 0 0 121 -4,-1.2 4,-0.9 2,-0.2 -1,-0.2 0.867 111.9 46.9 -70.0 -37.5 -9.1 -0.1 3.9 66 66 A R H >X S+ 0 0 110 -4,-1.2 4,-1.6 1,-0.2 3,-0.8 0.924 108.1 54.0 -70.2 -46.1 -6.8 2.7 5.1 67 67 A A H 3X S+ 0 0 2 -4,-2.7 4,-1.2 1,-0.3 -1,-0.2 0.800 104.8 57.2 -58.7 -29.4 -6.3 4.2 1.7 68 68 A E H 3X S+ 0 0 140 -4,-1.1 4,-1.4 -5,-0.2 -1,-0.3 0.825 105.0 50.4 -71.6 -32.0 -10.1 4.4 1.4 69 69 A K H