==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=20-JUL-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 24-APR-07 2YX5 . COMPND 2 MOLECULE: UPF0062 PROTEIN MJ1593; . SOURCE 2 ORGANISM_SCIENTIFIC: METHANOCALDOCOCCUS JANNASCHII; . AUTHOR M.KANAGAWA,S.BABA,Y.AGARI,L.Q.CHEN,Z.-Q.FU,J.CHRZAS,B.C.WANG . 82 2 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6511.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 61 74.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 18 22.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 12 14.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 5 6.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 23 28.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 3 3.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 94 0, 0.0 81,-3.0 0, 0.0 2,-0.3 0.000 360.0 360.0 360.0 129.7 29.6 20.9 -4.5 2 2 A Y E -AB 47 81A 20 45,-2.9 45,-2.8 79,-0.3 2,-0.6 -0.955 360.0-140.3-133.7 152.3 32.5 20.5 -2.2 3 3 A K E -AB 46 80A 73 77,-3.1 77,-2.4 -2,-0.3 2,-0.5 -0.952 18.7-164.6-112.5 111.8 35.8 18.7 -2.2 4 4 A A E -AB 45 79A 0 41,-3.4 41,-3.3 -2,-0.6 2,-0.6 -0.837 5.6-154.2 -98.4 133.6 36.8 17.2 1.1 5 5 A T E -AB 44 78A 14 73,-4.1 73,-2.4 -2,-0.5 2,-0.6 -0.932 8.2-168.3-110.0 120.0 40.4 16.1 1.5 6 6 A V E -AB 43 77A 0 37,-3.1 37,-2.8 -2,-0.6 2,-0.5 -0.933 1.9-168.2-110.3 119.6 41.1 13.3 4.0 7 7 A I E -AB 42 76A 21 69,-2.5 69,-2.1 -2,-0.6 2,-0.4 -0.927 8.6-169.9-104.1 127.7 44.7 12.6 5.0 8 8 A I E +AB 41 75A 16 33,-2.2 33,-2.3 -2,-0.5 2,-0.3 -0.980 12.7 160.6-122.6 129.5 45.2 9.4 6.9 9 9 A K E - B 0 74A 47 65,-2.6 65,-2.5 -2,-0.4 2,-0.1 -0.810 44.5 -83.6-135.3 174.7 48.4 8.4 8.6 10 10 A L E - B 0 73A 47 29,-0.3 63,-0.3 -2,-0.3 3,-0.1 -0.498 65.2 -79.1 -78.0 154.5 49.5 6.0 11.4 11 11 A K > - 0 0 74 61,-1.4 3,-2.0 1,-0.1 2,-0.3 -0.117 60.6 -89.7 -48.7 149.0 49.2 7.3 14.9 12 12 A K T 3 S+ 0 0 185 1,-0.3 -1,-0.1 -3,-0.1 3,-0.1 -0.513 117.0 29.1 -66.5 126.0 52.1 9.7 15.9 13 13 A G T 3 S+ 0 0 76 1,-0.3 2,-0.5 -2,-0.3 -1,-0.3 0.306 89.0 117.6 106.9 -9.4 54.9 7.6 17.3 14 14 A V < - 0 0 82 -3,-2.0 -1,-0.3 58,-0.1 -4,-0.1 -0.819 66.8-123.1 -94.8 127.7 54.2 4.4 15.4 15 15 A L - 0 0 127 -2,-0.5 -4,-0.1 -3,-0.1 -1,-0.0 -0.439 20.6-143.8 -69.0 141.5 56.9 3.3 13.1 16 16 A N > - 0 0 28 1,-0.1 4,-2.4 -2,-0.1 5,-0.2 -0.909 8.7-160.9-114.0 106.5 55.9 2.9 9.4 17 17 A P H > S+ 0 0 87 0, 0.0 4,-2.4 0, 0.0 5,-0.2 0.818 92.3 57.0 -51.9 -36.0 57.5 0.1 7.5 18 18 A E H > S+ 0 0 113 2,-0.2 4,-2.5 1,-0.2 5,-0.2 0.959 108.6 44.5 -65.5 -47.3 56.5 1.7 4.2 19 19 A G H > S+ 0 0 1 -3,-0.2 4,-2.5 1,-0.2 -1,-0.2 0.948 114.9 48.4 -60.6 -49.0 58.4 5.0 5.0 20 20 A R H X S+ 0 0 108 -4,-2.4 4,-2.4 1,-0.2 -1,-0.2 0.894 111.9 50.5 -58.1 -40.7 61.4 3.2 6.3 21 21 A T H X S+ 0 0 90 -4,-2.4 4,-2.7 -5,-0.2 5,-0.3 0.913 109.1 49.5 -65.7 -45.2 61.5 1.0 3.2 22 22 A I H X S+ 0 0 60 -4,-2.5 4,-2.1 2,-0.2 -1,-0.2 0.928 110.9 51.5 -61.0 -43.0 61.3 3.8 0.8 23 23 A Q H X S+ 0 0 39 -4,-2.5 4,-2.7 -5,-0.2 5,-0.3 0.971 113.2 42.6 -57.0 -58.8 64.1 5.6 2.6 24 24 A R H X S+ 0 0 121 -4,-2.4 4,-3.2 1,-0.3 -1,-0.2 0.900 113.8 50.4 -57.8 -43.7 66.5 2.7 2.6 25 25 A A H X S+ 0 0 50 -4,-2.7 4,-1.2 -5,-0.2 -1,-0.3 0.865 112.0 50.9 -63.9 -32.4 65.7 1.7 -1.0 26 26 A L H <>S+ 0 0 51 -4,-2.1 5,-1.3 -5,-0.3 4,-0.3 0.928 112.2 43.6 -71.2 -43.5 66.3 5.4 -1.9 27 27 A N H ><5S+ 0 0 45 -4,-2.7 3,-2.0 1,-0.2 -2,-0.2 0.912 108.9 60.6 -65.3 -40.0 69.7 5.5 -0.2 28 28 A F H 3<5S+ 0 0 174 -4,-3.2 -1,-0.2 1,-0.3 -2,-0.2 0.836 102.9 50.8 -55.9 -35.1 70.5 2.2 -1.7 29 29 A L T 3<5S- 0 0 123 -4,-1.2 -1,-0.3 -3,-0.2 -2,-0.2 0.498 130.3 -91.0 -83.9 -1.6 70.1 3.6 -5.1 30 30 A G T < 5S+ 0 0 46 -3,-2.0 2,-2.9 -4,-0.3 -3,-0.2 0.018 88.9 124.3 120.0 -30.2 72.4 6.5 -4.4 31 31 A F > < + 0 0 121 -5,-1.3 3,-0.9 1,-0.2 -1,-0.1 -0.344 22.4 157.4 -65.6 74.1 70.1 9.2 -3.2 32 32 A N T 3 + 0 0 113 -2,-2.9 -1,-0.2 1,-0.2 -5,-0.1 0.574 62.0 75.8 -77.0 -7.2 72.0 9.7 0.1 33 33 A N T 3 S+ 0 0 157 -3,-0.2 2,-0.4 -6,-0.0 -1,-0.2 0.820 72.6 95.6 -67.2 -35.9 70.4 13.2 0.3 34 34 A V < + 0 0 39 -3,-0.9 3,-0.1 1,-0.2 -7,-0.0 -0.458 48.1 170.6 -63.2 117.6 67.2 11.6 1.4 35 35 A K + 0 0 173 -2,-0.4 2,-0.3 1,-0.3 -1,-0.2 0.700 59.8 2.6-103.3 -24.3 67.1 11.7 5.1 36 36 A E - 0 0 159 -13,-0.1 2,-0.4 2,-0.0 -1,-0.3 -0.959 55.8-161.1-164.8 142.2 63.6 10.6 6.0 37 37 A V - 0 0 33 -2,-0.3 2,-0.3 -3,-0.1 -14,-0.1 -0.975 7.5-179.7-129.9 145.0 60.4 9.4 4.3 38 38 A Q - 0 0 78 -2,-0.4 2,-0.3 -19,-0.1 -2,-0.0 -0.979 11.8-151.9-139.4 148.9 56.8 9.3 5.5 39 39 A T + 0 0 26 -2,-0.3 -29,-0.3 2,-0.0 2,-0.3 -0.933 12.3 177.8-128.6 152.6 53.7 8.1 3.7 40 40 A Y - 0 0 131 -2,-0.3 2,-0.5 -31,-0.1 -31,-0.2 -0.956 28.9-121.2-145.0 159.9 50.0 8.9 3.8 41 41 A K E -A 8 0A 147 -33,-2.3 -33,-2.2 -2,-0.3 2,-0.5 -0.900 26.1-155.2-105.7 130.3 46.8 7.9 2.2 42 42 A M E -A 7 0A 126 -2,-0.5 2,-0.5 -35,-0.2 -35,-0.2 -0.934 9.1-171.4-108.4 129.1 45.0 10.8 0.5 43 43 A I E -A 6 0A 50 -37,-2.8 -37,-3.1 -2,-0.5 2,-0.7 -0.951 5.8-162.1-123.9 111.8 41.2 10.5 0.0 44 44 A D E -A 5 0A 69 -2,-0.5 2,-0.7 -39,-0.2 -39,-0.2 -0.812 7.7-167.3 -93.4 113.3 39.4 13.1 -2.0 45 45 A I E -A 4 0A 35 -41,-3.3 -41,-3.4 -2,-0.7 2,-0.7 -0.890 5.7-161.1-107.2 116.8 35.7 13.1 -1.4 46 46 A I E +A 3 0A 124 -2,-0.7 2,-0.3 -43,-0.2 -43,-0.2 -0.857 31.9 153.8 -95.3 117.6 33.5 15.0 -3.8 47 47 A M E A 2 0A 20 -45,-2.8 -45,-2.9 -2,-0.7 8,-0.0 -0.930 360.0 360.0-145.4 166.0 30.1 15.7 -2.2 48 48 A E 0 0 167 -2,-0.3 -1,-0.1 -47,-0.2 7,-0.0 0.839 360.0 360.0-101.6 360.0 27.0 17.8 -1.9 49 ! 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 50 50 A E 0 0 159 0, 0.0 2,-0.3 0, 0.0 3,-0.0 0.000 360.0 360.0 360.0 -67.3 25.1 23.1 3.1 51 51 A N > - 0 0 62 1,-0.0 4,-1.7 -49,-0.0 3,-0.5 -0.946 360.0 -89.6-168.8 163.7 28.5 24.7 3.8 52 52 A E H > S+ 0 0 88 -2,-0.3 4,-2.5 1,-0.2 5,-0.2 0.805 120.3 53.1 -55.5 -36.8 32.1 23.7 4.5 53 53 A E H > S+ 0 0 104 1,-0.2 4,-1.5 2,-0.2 -1,-0.2 0.907 111.5 47.2 -67.9 -36.3 31.8 23.4 8.3 54 54 A K H > S+ 0 0 97 -3,-0.5 4,-1.6 2,-0.2 -1,-0.2 0.808 111.3 51.5 -72.9 -27.7 28.8 21.1 7.9 55 55 A V H X S+ 0 0 5 -4,-1.7 4,-2.7 2,-0.2 5,-0.4 0.944 106.7 53.1 -70.3 -49.2 30.7 19.0 5.3 56 56 A K H X S+ 0 0 72 -4,-2.5 4,-1.8 1,-0.3 -2,-0.2 0.858 107.8 53.1 -53.2 -38.2 33.7 18.7 7.6 57 57 A E H X S+ 0 0 96 -4,-1.5 4,-1.7 2,-0.2 -1,-0.3 0.930 109.5 48.4 -65.2 -42.6 31.3 17.4 10.2 58 58 A E H X S+ 0 0 109 -4,-1.6 4,-2.0 2,-0.2 -2,-0.2 0.936 112.9 43.8 -65.1 -47.1 29.9 14.8 7.8 59 59 A V H X S+ 0 0 0 -4,-2.7 4,-2.8 1,-0.2 5,-0.2 0.847 107.2 63.9 -66.9 -29.0 33.3 13.4 6.6 60 60 A E H X S+ 0 0 70 -4,-1.8 4,-2.5 -5,-0.4 -1,-0.2 0.927 105.3 44.6 -57.6 -45.1 34.2 13.5 10.3 61 61 A E H X S+ 0 0 84 -4,-1.7 4,-2.6 -3,-0.2 -1,-0.2 0.882 108.7 55.9 -65.5 -42.0 31.5 11.0 10.8 62 62 A M H X>S+ 0 0 49 -4,-2.0 5,-1.7 2,-0.2 4,-1.1 0.915 112.1 44.2 -55.8 -43.9 32.6 9.0 7.7 63 63 A C H ><>S+ 0 0 0 -4,-2.8 5,-1.9 3,-0.2 3,-0.7 0.951 111.4 53.7 -63.2 -53.5 36.1 8.7 9.3 64 64 A K H 3<5S+ 0 0 132 -4,-2.5 -2,-0.2 1,-0.2 -1,-0.2 0.820 122.1 27.8 -54.3 -38.8 34.7 7.9 12.7 65 65 A K H 3<5S- 0 0 158 -4,-2.6 -1,-0.2 -5,-0.1 -2,-0.2 0.392 140.2 -6.6-111.2 7.4 32.7 5.0 11.5 66 66 A L T <<5S+ 0 0 144 -4,-1.1 -3,-0.2 -3,-0.7 -4,-0.1 0.291 114.5 59.5-154.3 -66.1 34.5 3.7 8.4 67 67 A L T > - 0 0 75 -2,-0.4 4,-2.5 1,-0.1 3,-1.2 -0.914 14.5-153.6-107.1 107.5 40.5 3.4 12.9 70 70 A P T 34 S+ 0 0 77 0, 0.0 -1,-0.1 0, 0.0 -6,-0.0 0.748 90.6 65.5 -49.7 -31.4 41.5 5.7 15.8 71 71 A V T 34 S+ 0 0 116 1,-0.2 -60,-0.1 -3,-0.1 3,-0.0 0.915 124.9 11.2 -61.3 -42.3 43.5 3.0 17.5 72 72 A I T <4 S+ 0 0 83 -3,-1.2 -61,-1.4 -62,-0.1 2,-0.4 0.437 121.8 74.1-113.7 -4.9 46.0 2.9 14.7 73 73 A H E < -B 10 0A 46 -4,-2.5 2,-0.3 -63,-0.3 -63,-0.2 -0.895 45.8-173.0-124.4 147.1 45.1 6.0 12.7 74 74 A D E +B 9 0A 44 -65,-2.5 -65,-2.6 -2,-0.4 2,-0.3 -0.889 23.4 177.9-121.7 150.7 45.4 9.7 12.8 75 75 A Y E -B 8 0A 76 -2,-0.3 2,-0.3 -67,-0.2 -67,-0.2 -0.989 17.8-157.9-154.3 159.2 43.5 11.8 10.2 76 76 A E E -B 7 0A 90 -69,-2.1 -69,-2.5 -2,-0.3 2,-0.4 -0.995 10.6-145.8-142.2 147.1 42.8 15.3 9.1 77 77 A I E -B 6 0A 13 -2,-0.3 2,-0.4 -71,-0.2 -71,-0.2 -0.951 11.3-177.2-123.1 126.0 40.1 16.9 7.0 78 78 A K E -B 5 0A 108 -73,-2.4 -73,-4.1 -2,-0.4 2,-0.5 -0.956 10.6-164.0-116.4 131.8 40.2 19.9 4.6 79 79 A V E -B 4 0A 26 -2,-0.4 2,-0.4 -75,-0.3 -75,-0.2 -0.974 8.0-179.9-122.0 123.1 37.0 21.1 2.9 80 80 A E E -B 3 0A 121 -77,-2.4 -77,-3.1 -2,-0.5 2,-0.4 -0.975 27.1-125.9-121.6 135.6 37.0 23.4 -0.1 81 81 A K E -B 2 0A 77 -2,-0.4 2,-0.5 -79,-0.2 -79,-0.3 -0.644 25.2-125.2 -79.6 133.0 33.9 24.6 -1.9 82 82 A I 0 0 76 -81,-3.0 -1,-0.1 -2,-0.4 0, 0.0 -0.688 360.0 360.0 -79.9 124.3 34.0 23.9 -5.6 83 83 A E 0 0 211 -2,-0.5 -3,-0.0 -81,-0.0 -81,-0.0 -0.730 360.0 360.0-117.2 360.0 33.5 27.2 -7.3