==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=20-JUL-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 30-MAR-05 1Z8M . COMPND 2 MOLECULE: CONSERVED HYPOTHETICAL PROTEIN HP0894; . SOURCE 2 ORGANISM_SCIENTIFIC: HELICOBACTER PYLORI; . AUTHOR K.D.HAN,S.J.PARK,S.B.JANG,B.J.LEE . 88 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6532.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 57 64.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 4 4.5 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 14 15.9 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 5 5.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 11 12.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 17 19.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 3 3.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 187 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 167.0 -11.6 -4.1 11.6 2 2 A L - 0 0 92 1,-0.1 73,-0.2 73,-0.1 2,-0.1 -0.030 360.0 -91.8 -57.1 165.9 -12.6 -3.4 8.0 3 3 A K B -a 75 0A 89 71,-0.7 73,-2.8 69,-0.1 2,-0.4 -0.477 36.2-144.7 -82.4 154.0 -12.0 -6.1 5.3 4 4 A L + 0 0 70 71,-0.2 2,-0.3 -2,-0.1 73,-0.2 -0.924 17.1 179.7-122.0 146.3 -8.8 -6.3 3.2 5 5 A N - 0 0 59 -2,-0.4 73,-1.8 70,-0.0 2,-0.3 -0.833 14.5-142.6-136.0 173.7 -8.4 -7.4 -0.4 6 6 A L B -b 78 0A 84 -2,-0.3 2,-0.2 71,-0.2 73,-0.2 -0.998 8.8-154.7-144.6 138.0 -5.6 -7.8 -3.0 7 7 A K > - 0 0 84 71,-0.9 4,-2.3 -2,-0.3 5,-0.2 -0.573 37.9-100.5-106.0 171.0 -5.4 -7.1 -6.7 8 8 A K H > S+ 0 0 166 1,-0.2 4,-1.2 2,-0.2 5,-0.1 0.808 123.1 52.7 -59.2 -30.1 -3.2 -8.6 -9.4 9 9 A S H > S+ 0 0 54 70,-0.2 4,-2.0 2,-0.2 3,-0.5 0.969 110.1 43.3 -70.4 -55.9 -1.0 -5.4 -9.2 10 10 A F H > S+ 0 0 8 69,-1.9 4,-1.4 68,-0.3 5,-0.2 0.838 109.2 61.2 -59.1 -33.8 -0.4 -5.6 -5.4 11 11 A Q H X>S+ 0 0 122 -4,-2.3 4,-1.0 68,-0.2 5,-0.6 0.896 115.2 31.8 -60.6 -42.1 0.2 -9.3 -5.7 12 12 A K H <5S+ 0 0 128 -4,-1.2 -1,-0.2 -3,-0.5 -2,-0.2 0.626 118.9 55.4 -90.0 -16.4 3.2 -8.7 -8.1 13 13 A D H <5S+ 0 0 28 -4,-2.0 -2,-0.2 3,-0.2 -3,-0.2 0.563 109.1 48.8 -90.8 -11.5 4.1 -5.5 -6.4 14 14 A F H X5S+ 0 0 49 -4,-1.4 4,-0.7 -5,-0.2 -2,-0.2 0.925 132.7 3.1 -90.3 -69.9 4.4 -7.1 -3.0 15 15 A D H X5S+ 0 0 98 -4,-1.0 4,-1.0 -5,-0.2 -3,-0.2 0.758 132.8 53.9 -90.8 -29.6 6.5 -10.2 -3.3 16 16 A K H 44>S+ 0 0 13 2,-0.2 3,-1.4 1,-0.1 5,-0.9 0.816 99.1 66.0 -87.2 -34.5 8.7 -6.4 -6.4 18 18 A L H 3X5S+ 0 0 29 -4,-0.7 4,-1.0 1,-0.3 3,-0.5 0.917 109.3 37.7 -51.8 -49.4 10.9 -7.4 -3.4 19 19 A L T 3<5S+ 0 0 110 -4,-1.0 -1,-0.3 1,-0.2 -2,-0.2 0.401 101.3 80.1 -84.3 2.5 13.1 -9.5 -5.6 20 20 A N T <45S- 0 0 119 -3,-1.4 -1,-0.2 -5,-0.1 -2,-0.1 -0.059 131.5 -72.0 -98.7 32.0 12.8 -6.9 -8.4 21 21 A G T 45S+ 0 0 84 -3,-0.5 2,-0.4 1,-0.3 -2,-0.2 0.718 94.0 139.7 86.9 23.0 15.4 -4.7 -6.8 22 22 A F << - 0 0 25 -4,-1.0 2,-1.2 -5,-0.9 -1,-0.3 -0.827 61.9-112.1-103.8 139.3 13.2 -3.5 -4.0 23 23 A D >> - 0 0 86 -2,-0.4 3,-1.3 1,-0.2 4,-0.8 -0.539 29.7-174.7 -70.5 97.8 14.4 -3.1 -0.4 24 24 A D H 3> S+ 0 0 98 -2,-1.2 4,-1.0 -6,-0.3 -1,-0.2 0.626 77.9 72.0 -68.6 -12.7 12.6 -5.9 1.4 25 25 A S H 34 S+ 0 0 77 1,-0.2 -1,-0.3 2,-0.2 4,-0.1 0.755 97.1 48.1 -74.0 -24.8 14.0 -4.6 4.7 26 26 A V H X> S+ 0 0 22 -3,-1.3 4,-1.3 1,-0.2 3,-1.1 0.745 100.9 64.4 -86.1 -26.2 11.7 -1.5 4.5 27 27 A L H 3X S+ 0 0 21 -4,-0.8 4,-3.5 1,-0.3 5,-0.5 0.868 88.8 68.0 -64.3 -37.2 8.6 -3.6 3.8 28 28 A N H 3< S+ 0 0 116 -4,-1.0 -1,-0.3 1,-0.2 -2,-0.1 0.728 103.3 47.7 -55.0 -22.2 8.9 -5.3 7.2 29 29 A E H <> S+ 0 0 98 -3,-1.1 4,-0.6 -4,-0.1 -1,-0.2 0.897 119.5 34.0 -85.9 -46.8 8.0 -1.9 8.6 30 30 A V H >X S+ 0 0 2 -4,-1.3 4,-1.5 1,-0.2 3,-1.0 0.924 119.4 49.7 -75.0 -46.3 5.0 -1.0 6.4 31 31 A I H 3X S+ 0 0 27 -4,-3.5 4,-1.5 1,-0.2 -1,-0.2 0.672 105.8 61.8 -66.2 -15.9 3.7 -4.6 6.1 32 32 A L H 34 S+ 0 0 70 -5,-0.5 -1,-0.2 2,-0.2 6,-0.2 0.765 105.5 43.9 -80.4 -27.9 4.0 -4.8 9.9 33 33 A T H - 0 0 82 1,-0.1 3,-1.3 -3,-0.1 5,-0.3 -0.559 12.7-122.6 -90.1 155.9 -3.7 7.5 9.9 42 42 A P G > S+ 0 0 103 0, 0.0 3,-0.7 0, 0.0 4,-0.2 0.578 105.8 74.9 -72.0 -9.1 -5.1 10.6 8.2 43 43 A Q G 3 S+ 0 0 139 1,-0.2 -3,-0.0 2,-0.1 -2,-0.0 0.392 75.0 80.5 -83.7 3.7 -1.7 12.3 8.6 44 44 A F G < S- 0 0 41 -3,-1.3 16,-1.1 2,-0.1 -1,-0.2 0.161 110.4-111.8 -94.4 18.0 -0.3 10.1 5.8 45 45 A Q < + 0 0 140 -3,-0.7 2,-0.5 1,-0.2 13,-0.2 0.861 53.9 177.7 55.0 37.4 -1.8 12.4 3.2 46 46 A D + 0 0 37 -5,-0.3 2,-0.3 -4,-0.2 -1,-0.2 -0.619 23.8 102.2 -77.4 121.4 -4.3 9.6 2.2 47 47 A H E S-C 58 0A 143 11,-0.9 11,-2.6 -2,-0.5 2,-0.3 -0.944 72.5 -41.9-172.9-170.0 -6.7 10.7 -0.5 48 48 A A E -C 57 0A 48 -2,-0.3 9,-0.2 9,-0.2 6,-0.1 -0.576 55.9-133.0 -78.2 134.2 -7.6 10.6 -4.2 49 49 A L - 0 0 36 4,-0.8 2,-0.3 7,-0.7 7,-0.2 -0.129 19.8-110.8 -76.7 177.8 -4.7 10.9 -6.6 50 50 A K S > S+ 0 0 190 2,-0.0 3,-0.6 4,-0.0 2,-0.4 -0.828 73.9 14.0-113.9 152.7 -4.5 13.1 -9.7 51 51 A G G > S- 0 0 61 -2,-0.3 3,-0.6 1,-0.2 -2,-0.0 -0.754 128.7 -9.6 94.4-134.9 -4.5 12.2 -13.3 52 52 A K G 3 S+ 0 0 176 -2,-0.4 -1,-0.2 1,-0.2 -3,-0.0 0.619 127.8 70.2 -77.0 -13.0 -5.5 8.7 -14.5 53 53 A W G X + 0 0 119 -3,-0.6 -4,-0.8 1,-0.2 3,-0.6 -0.161 62.4 118.3 -96.6 39.1 -5.4 7.6 -10.9 54 54 A K T < + 0 0 156 -3,-0.6 2,-1.7 1,-0.2 -1,-0.2 0.948 67.4 56.1 -69.3 -51.0 -8.5 9.5 -10.0 55 55 A P T 3 S+ 0 0 84 0, 0.0 2,-0.3 0, 0.0 -1,-0.2 -0.194 104.7 69.4 -78.4 47.9 -10.7 6.5 -9.0 56 56 A F S < S- 0 0 52 -2,-1.7 -7,-0.7 -3,-0.6 2,-0.4 -0.950 71.6-126.1-154.2 171.0 -8.1 5.4 -6.4 57 57 A R E -CD 48 69A 64 12,-1.3 12,-2.2 -2,-0.3 2,-0.2 -0.990 17.8-158.4-130.5 134.8 -6.6 6.3 -3.1 58 58 A E E +C 47 0A 42 -11,-2.6 -11,-0.9 -2,-0.4 2,-0.2 -0.686 11.7 173.9-108.0 162.6 -2.9 6.7 -2.2 59 59 A C - 0 0 0 8,-0.4 8,-1.7 -2,-0.2 2,-1.4 -0.715 23.3-148.8-171.1 114.2 -1.1 6.6 1.2 60 60 A H + 0 0 55 -16,-1.1 6,-0.2 6,-0.2 -14,-0.0 -0.664 15.4 179.8 -90.2 85.1 2.6 6.7 2.0 61 61 A I S S+ 0 0 9 -2,-1.4 -1,-0.2 2,-0.1 5,-0.1 0.778 75.7 25.7 -53.9 -26.9 2.9 4.5 5.1 62 62 A K S > S- 0 0 49 3,-0.4 3,-1.9 -3,-0.1 -3,-0.0 -0.914 90.0-106.4-135.6 161.7 6.6 5.3 5.0 63 63 A P T 3 S+ 0 0 118 0, 0.0 21,-0.1 0, 0.0 -2,-0.1 0.519 125.5 34.9 -66.2 -2.3 8.8 8.1 3.6 64 64 A D T 3 S+ 0 0 75 19,-0.1 2,-0.3 -38,-0.1 21,-0.1 0.050 108.5 80.1-138.0 23.7 9.8 5.7 0.9 65 65 A V < - 0 0 0 -3,-1.9 -3,-0.4 18,-0.2 18,-0.2 -0.975 44.7-176.6-135.7 149.2 6.6 3.7 0.4 66 66 A L E - E 0 82A 13 16,-2.5 16,-1.0 -2,-0.3 2,-0.5 -0.663 10.2-175.0-147.2 85.2 3.3 4.4 -1.5 67 67 A L E - E 0 81A 3 -8,-1.7 -8,-0.4 14,-0.2 2,-0.4 -0.708 11.9-152.2 -86.6 127.9 0.6 1.8 -1.1 68 68 A V E + E 0 80A 2 12,-3.6 11,-3.0 -2,-0.5 12,-1.0 -0.821 24.8 154.6-102.4 138.1 -2.5 2.2 -3.2 69 69 A Y E -DE 57 78A 14 -12,-2.2 -12,-1.3 -2,-0.4 2,-0.3 -0.943 31.9-123.0-151.9 170.7 -5.9 0.9 -2.1 70 70 A L E - E 0 77A 61 7,-2.9 7,-2.0 -2,-0.3 2,-0.7 -0.903 17.5-128.7-122.8 151.0 -9.7 1.5 -2.5 71 71 A V E + E 0 76A 88 -2,-0.3 5,-0.2 5,-0.2 2,-0.2 -0.867 33.3 176.8-102.9 109.6 -12.4 2.1 -0.0 72 72 A K E > - E 0 75A 115 3,-2.7 3,-1.5 -2,-0.7 2,-0.7 -0.516 48.4 -62.8-103.9 173.7 -15.4 -0.2 -0.4 73 73 A D T 3 S- 0 0 121 1,-0.3 -1,-0.1 -2,-0.2 3,-0.1 -0.403 115.9 -31.5 -59.9 104.0 -18.6 -0.6 1.6 74 74 A D T 3 S+ 0 0 151 -2,-0.7 -71,-0.7 1,-0.1 2,-0.3 0.755 131.4 92.1 54.2 24.7 -17.4 -1.6 5.0 75 75 A E E < -aE 3 72A 78 -3,-1.5 -3,-2.7 -73,-0.2 2,-0.3 -0.991 62.0-150.3-150.5 139.6 -14.5 -3.3 3.1 76 76 A L E - E 0 71A 21 -73,-2.8 2,-0.4 -2,-0.3 -5,-0.2 -0.821 8.2-162.2-111.2 150.0 -11.0 -2.3 2.0 77 77 A I E - E 0 70A 13 -7,-2.0 -7,-2.9 -2,-0.3 2,-0.4 -0.994 16.7-131.4-135.9 130.3 -9.1 -3.5 -1.1 78 78 A L E -bE 6 69A 14 -73,-1.8 -71,-0.9 -2,-0.4 -9,-0.3 -0.647 22.2-179.3 -81.2 127.9 -5.3 -3.3 -1.8 79 79 A L E - 0 0 25 -11,-3.0 -69,-1.9 -2,-0.4 -72,-0.3 0.932 51.9 -46.7 -88.3 -73.3 -4.5 -1.9 -5.2 80 80 A R E - E 0 68A 49 -12,-1.0 -12,-3.6 -71,-0.2 2,-0.4 -0.943 44.8-119.0-155.9 174.3 -0.7 -1.9 -5.6 81 81 A L E + E 0 67A 12 -2,-0.3 2,-0.3 -14,-0.2 -14,-0.2 -0.974 35.7 150.1-127.4 139.4 2.5 -0.9 -4.0 82 82 A G E - E 0 66A 0 -16,-1.0 -16,-2.5 -2,-0.4 2,-0.3 -0.875 29.7-122.7-151.6-176.7 5.2 1.6 -5.1 83 83 A S >> - 0 0 12 -2,-0.3 4,-2.0 -18,-0.2 5,-0.6 -0.857 35.8-100.9-132.9 167.6 7.9 4.0 -4.0 84 84 A H T 45S+ 0 0 102 -2,-0.3 4,-0.2 1,-0.3 -19,-0.1 0.815 128.5 39.9 -56.8 -31.2 8.8 7.7 -4.4 85 85 A S T 45S+ 0 0 104 -21,-0.1 -1,-0.3 3,-0.1 -21,-0.0 0.689 120.0 46.2 -90.3 -22.7 11.3 6.6 -7.1 86 86 A E T 45S+ 0 0 95 2,-0.2 -2,-0.2 -3,-0.1 -4,-0.0 0.964 112.1 42.9 -82.6 -67.5 9.0 3.9 -8.6 87 87 A L T <5 0 0 55 -4,-2.0 -3,-0.2 1,-0.3 -2,-0.1 0.764 360.0 360.0 -51.3 -26.0 5.6 5.6 -9.0 88 88 A F < 0 0 191 -5,-0.6 -1,-0.3 -4,-0.2 -2,-0.2 0.605 360.0 360.0 -95.0 360.0 7.6 8.6 -10.3