==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=20-JUL-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA BINDING PROTEIN 01-APR-05 1Z9F . COMPND 2 MOLECULE: SINGLE-STRAND BINDING PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; . AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) . 89 4 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6479.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 67 75.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 4 4.5 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 37 41.6 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 12 13.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 3 3.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 8 9.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 1 0 1 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 0 A H 0 0 237 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 161.3 -11.0 14.8 -43.2 2 1 A M - 0 0 146 3,-0.0 3,-0.1 0, 0.0 0, 0.0 -0.169 360.0-120.2 172.4 -57.8 -9.4 15.2 -39.8 3 2 A S S S+ 0 0 115 1,-0.5 2,-0.3 0, 0.0 0, 0.0 0.543 81.7 85.5 104.7 19.9 -5.5 15.6 -40.0 4 3 A F - 0 0 166 2,-0.0 -1,-0.5 0, 0.0 2,-0.3 -0.867 53.6-165.3-142.8 167.0 -4.6 12.5 -37.9 5 4 A F - 0 0 184 -2,-0.3 2,-0.3 -3,-0.1 -3,-0.0 -0.974 9.6-177.7-163.3 141.8 -4.2 8.8 -38.5 6 5 A N + 0 0 57 -2,-0.3 2,-0.4 2,-0.0 -2,-0.0 -0.867 17.0 159.0-151.0 108.1 -4.0 5.7 -36.5 7 6 A K - 0 0 80 -2,-0.3 2,-0.4 63,-0.1 63,-0.2 -0.989 12.2-178.3-139.0 128.1 -3.4 2.3 -38.1 8 7 A I E -A 69 0A 32 61,-3.0 61,-2.6 -2,-0.4 2,-0.4 -0.990 2.7-175.6-127.4 135.9 -2.0 -0.9 -36.8 9 8 A I E +A 68 0A 104 -2,-0.4 2,-0.3 59,-0.2 59,-0.2 -0.992 13.3 172.5-129.0 121.5 -1.5 -4.2 -38.7 10 9 A L E -A 67 0A 17 57,-2.6 57,-3.3 -2,-0.4 2,-0.4 -0.925 20.6-162.1-129.3 144.1 -0.3 -7.2 -36.7 11 10 A I E +A 66 0A 84 -2,-0.3 2,-0.3 55,-0.2 55,-0.2 -0.969 38.3 129.4-125.4 116.8 0.1 -10.9 -37.7 12 11 A G E -A 65 0A 3 53,-2.0 53,-3.1 -2,-0.4 23,-0.2 -0.952 54.8 -90.9-155.5 172.2 0.2 -13.2 -34.7 13 12 A R E -AB 64 34A 121 21,-1.7 21,-2.7 -2,-0.3 2,-0.6 -0.588 39.8-113.9 -84.9 151.3 -1.1 -16.4 -33.1 14 13 A L E - B 0 33A 1 49,-2.2 48,-4.8 46,-0.3 19,-0.2 -0.806 25.9-165.2 -79.5 123.1 -4.1 -16.4 -30.7 15 14 A V S S+ 0 0 63 17,-1.8 2,-0.3 -2,-0.6 -1,-0.1 0.592 71.8 12.5 -93.2 -14.0 -2.6 -17.4 -27.4 16 15 A R S S- 0 0 186 16,-0.7 16,-0.3 44,-0.1 -1,-0.2 -0.971 93.8 -81.7-152.1 166.3 -6.0 -18.1 -25.9 17 16 A D - 0 0 102 -2,-0.3 43,-0.1 1,-0.1 15,-0.1 -0.165 54.3 -96.2 -63.8 148.4 -9.6 -18.5 -27.0 18 17 A P - 0 0 13 0, 0.0 2,-0.6 0, 0.0 13,-0.2 -0.310 28.7-133.5 -67.6 149.6 -11.7 -15.5 -27.7 19 18 A E E -C 30 0A 136 11,-2.7 11,-1.7 2,-0.1 2,-0.4 -0.934 12.2-149.3-105.9 113.0 -14.1 -14.1 -25.0 20 19 A E E +C 29 0A 38 -2,-0.6 2,-0.3 9,-0.2 9,-0.2 -0.721 23.9 170.2 -82.7 140.5 -17.6 -13.3 -26.3 21 20 A R E -C 28 0A 172 7,-2.3 7,-0.7 -2,-0.4 2,-0.4 -0.857 20.4-150.5-166.7 85.2 -18.9 -10.5 -24.3 22 21 A Y E -C 27 0A 156 -2,-0.3 -2,-0.0 5,-0.2 7,-0.0 -0.641 13.4-167.1 -79.3 124.8 -22.2 -8.9 -25.4 23 22 A T 0 0 53 3,-3.7 -1,-0.1 -2,-0.4 5,-0.1 0.073 360.0 360.0 -76.3-166.5 -22.8 -5.2 -24.7 24 23 A L 0 0 193 3,-0.0 -2,-0.0 2,-0.0 0, 0.0 0.933 360.0 360.0 -9.1 360.0 -25.9 -3.1 -24.9 25 ! 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 26 26 A T 0 0 95 0, 0.0 -3,-3.7 0, 0.0 2,-0.2 0.000 360.0 360.0 360.0 -61.5 -24.0 -5.7 -29.1 27 27 A P E +C 22 0A 19 0, 0.0 22,-1.5 0, 0.0 2,-0.4 -0.378 360.0 177.9 -75.2 129.7 -21.4 -8.5 -29.7 28 28 A V E -CD 21 48A 8 -7,-0.7 -7,-2.3 20,-0.2 2,-0.4 -0.997 3.4-177.6-128.0 128.0 -17.9 -7.9 -28.4 29 29 A T E -CD 20 47A 0 18,-1.6 18,-2.4 -2,-0.4 2,-0.3 -0.985 5.1-170.6-126.3 131.7 -15.2 -10.5 -28.7 30 30 A T E +CD 19 46A 28 -11,-1.7 -11,-2.7 -2,-0.4 2,-0.3 -0.886 11.8 159.7-120.1 153.3 -11.7 -10.0 -27.3 31 31 A F E - D 0 45A 7 14,-2.0 14,-4.5 -2,-0.3 2,-0.4 -0.934 29.7-129.8-164.9 157.5 -8.5 -12.0 -27.7 32 32 A T E - D 0 44A 39 -16,-0.3 -17,-1.8 -2,-0.3 -16,-0.7 -0.937 20.1-154.4-117.5 137.0 -4.8 -11.4 -27.3 33 33 A I E -BD 14 43A 0 10,-1.9 10,-1.8 -2,-0.4 2,-0.6 -0.800 14.5-129.9-110.2 152.2 -2.3 -12.4 -30.0 34 34 A A E -BD 13 42A 15 -21,-2.7 -21,-1.7 -2,-0.3 2,-0.6 -0.934 24.7-178.9-100.8 117.0 1.3 -13.2 -29.6 35 35 A V E - D 0 41A 27 6,-2.9 6,-1.4 -2,-0.6 -23,-0.1 -0.844 13.6-161.8-116.1 88.5 3.3 -11.2 -32.2 36 36 A D E D 0 40A 122 -2,-0.6 4,-0.2 4,-0.2 -2,-0.0 -0.436 360.0 360.0 -80.7 150.9 6.9 -12.2 -31.7 37 37 A R 0 0 204 2,-2.0 -1,-0.1 -2,-0.1 3,-0.0 -0.552 360.0 360.0 -82.5 360.0 9.8 -10.1 -33.0 38 ! 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 39 49 A T 0 0 130 0, 0.0 -2,-2.0 0, 0.0 2,-0.2 0.000 360.0 360.0 360.0 155.1 10.9 -11.6 -27.2 40 50 A T E -D 36 0A 43 -4,-0.2 2,-0.5 -3,-0.0 -4,-0.2 -0.664 360.0-143.0-104.0 153.5 7.2 -11.4 -27.9 41 51 A D E -D 35 0A 57 -6,-1.4 -6,-2.9 -2,-0.2 2,-0.4 -0.984 17.6-152.2-111.3 128.9 4.7 -8.5 -27.9 42 52 A F E -D 34 0A 130 -2,-0.5 2,-0.4 -8,-0.2 -8,-0.2 -0.851 11.0-168.7-104.3 136.5 1.2 -9.3 -26.7 43 53 A F E -D 33 0A 43 -10,-1.8 -10,-1.9 -2,-0.4 2,-0.6 -0.985 21.0-136.0-129.3 124.4 -1.8 -7.3 -27.9 44 54 A R E -De 32 82A 59 37,-0.6 39,-2.9 -2,-0.4 2,-0.5 -0.707 27.4-156.9 -71.2 114.8 -5.4 -7.3 -26.6 45 55 A I E -De 31 83A 0 -14,-4.5 -14,-2.0 -2,-0.6 2,-0.4 -0.866 6.5-164.6 -96.0 130.0 -7.6 -7.4 -29.8 46 56 A V E -De 30 84A 8 37,-3.5 39,-2.7 -2,-0.5 2,-0.3 -0.951 6.3-175.8-112.6 134.7 -11.2 -6.1 -29.6 47 57 A T E -D 29 0A 0 -18,-2.4 -18,-1.6 -2,-0.4 2,-0.3 -0.939 4.6-162.3-126.6 150.3 -13.9 -6.8 -32.2 48 58 A F E >> -D 28 0A 106 37,-0.4 3,-1.2 -2,-0.3 4,-0.5 -0.930 50.4 -11.7-131.0 152.7 -17.5 -5.5 -32.5 49 59 A G H 3> S- 0 0 26 -22,-1.5 4,-2.6 -2,-0.3 3,-0.4 -0.256 127.5 -3.7 62.8-140.4 -20.6 -6.6 -34.4 50 60 A R H 3> S+ 0 0 73 1,-0.2 4,-3.6 2,-0.2 -1,-0.2 0.771 136.2 55.5 -58.3 -30.0 -20.3 -9.2 -37.1 51 61 A L H <> S+ 0 0 38 -3,-1.2 4,-3.1 2,-0.2 -1,-0.2 0.896 107.9 47.5 -70.5 -43.5 -16.5 -9.3 -36.7 52 62 A A H X S+ 0 0 0 -4,-0.5 4,-2.5 -3,-0.4 5,-0.2 0.933 115.1 47.9 -53.6 -48.8 -17.0 -10.1 -32.9 53 63 A E H X S+ 0 0 102 -4,-2.6 4,-2.2 1,-0.2 -2,-0.2 0.936 113.9 45.2 -59.8 -50.5 -19.5 -12.7 -34.1 54 64 A F H X S+ 0 0 56 -4,-3.6 4,-1.2 2,-0.2 5,-0.5 0.906 113.1 53.3 -56.9 -42.7 -17.0 -14.0 -36.7 55 65 A A H >X S+ 0 0 0 -4,-3.1 4,-3.5 1,-0.2 3,-0.9 0.980 112.2 40.7 -60.3 -62.1 -14.2 -13.9 -34.1 56 66 A R H 3< S+ 0 0 126 -4,-2.5 -1,-0.2 1,-0.2 -2,-0.2 0.872 118.4 45.4 -54.1 -45.6 -15.9 -16.0 -31.4 57 67 A T H 3< S+ 0 0 97 -4,-2.2 -1,-0.2 -5,-0.2 -2,-0.2 0.594 130.0 21.8 -81.3 -8.9 -17.5 -18.6 -33.8 58 68 A Y H << S+ 0 0 137 -4,-1.2 2,-0.3 -3,-0.9 -2,-0.2 0.682 100.1 86.4-125.1 -32.6 -14.3 -19.1 -35.8 59 69 A L < + 0 0 3 -4,-3.5 2,-0.3 -5,-0.5 -1,-0.1 -0.566 47.2 168.4 -82.1 135.0 -11.1 -18.1 -33.9 60 70 A T > - 0 0 72 -2,-0.3 3,-1.1 -43,-0.1 -46,-0.3 -0.942 42.4 -72.4-137.7 161.9 -9.4 -20.5 -31.5 61 71 A K T 3 S+ 0 0 46 -2,-0.3 2,-0.7 1,-0.2 -46,-0.2 -0.070 113.9 21.5 -52.6 149.7 -6.0 -20.5 -29.6 62 72 A G T 3 S+ 0 0 41 -48,-4.8 -1,-0.2 1,-0.2 -47,-0.1 -0.159 89.4 129.6 84.7 -41.0 -2.8 -21.1 -31.7 63 73 A R < - 0 0 91 -3,-1.1 -49,-2.2 -2,-0.7 2,-0.6 -0.147 59.3-126.3 -48.8 136.0 -4.5 -20.0 -34.9 64 74 A L E +A 13 0A 39 -51,-0.2 27,-3.0 -3,-0.1 28,-0.9 -0.799 34.9 179.4 -94.8 119.5 -2.5 -17.3 -36.9 65 75 A V E -AF 12 90A 0 -53,-3.1 -53,-2.0 -2,-0.6 2,-0.5 -0.861 29.6-135.3-123.3 150.8 -4.4 -14.2 -37.7 66 76 A L E -AF 11 89A 31 23,-3.0 23,-1.5 -2,-0.3 2,-0.4 -0.871 26.8-164.8 -90.2 135.2 -3.9 -10.9 -39.5 67 77 A V E -AF 10 88A 0 -57,-3.3 -57,-2.6 -2,-0.5 2,-0.5 -0.989 9.2-177.3-124.8 126.4 -5.4 -8.0 -37.5 68 78 A E E +AF 9 87A 46 19,-2.2 18,-3.4 -2,-0.4 19,-2.0 -0.970 35.1 86.6-115.7 131.0 -6.0 -4.6 -38.9 69 79 A G E -AF 8 85A 0 -61,-2.6 -61,-3.0 -2,-0.5 2,-0.4 -0.900 68.2 -44.3-178.6-144.9 -7.3 -1.8 -36.8 70 80 A E E - F 0 84A 65 14,-2.5 14,-1.9 -2,-0.3 2,-0.9 -0.882 38.1-127.6-117.9 145.7 -6.5 1.1 -34.5 71 81 A M E - F 0 83A 37 -2,-0.4 2,-0.5 12,-0.2 12,-0.2 -0.833 28.9-161.1 -92.3 107.0 -4.2 1.3 -31.5 72 82 A R E - F 0 82A 111 10,-3.2 10,-2.0 -2,-0.9 2,-0.7 -0.814 13.4-164.6 -90.1 132.2 -6.3 2.6 -28.6 73 83 A M E - F 0 81A 99 -2,-0.5 2,-0.4 8,-0.2 6,-0.1 -0.688 23.0-171.4-111.2 70.7 -4.5 4.0 -25.7 74 84 A R E F 0 80A 143 6,-2.0 6,-4.8 -2,-0.7 4,-0.2 -0.548 360.0 360.0 -86.9 123.8 -7.4 4.0 -23.3 75 85 A R 0 0 182 -2,-0.4 4,-0.1 4,-0.3 -1,-0.0 -0.733 360.0 360.0 -95.0 360.0 -7.0 5.7 -20.0 76 ! 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 77 93 A K 0 0 197 0, 0.0 2,-0.3 0, 0.0 -2,-0.1 0.000 360.0 360.0 360.0 114.9 -7.6 6.4 -16.0 78 94 A R - 0 0 222 -4,-0.2 -4,-0.1 2,-0.0 0, 0.0 -0.882 360.0-101.5-143.7 105.9 -4.6 4.1 -16.2 79 95 A V - 0 0 87 -2,-0.3 -4,-0.3 -4,-0.1 -5,-0.1 0.050 41.6-175.7 -55.1 113.7 -3.5 3.7 -19.9 80 96 A S E - F 0 74A 33 -6,-4.8 -6,-2.0 2,-0.0 2,-0.6 -0.909 16.3-142.1-112.5 118.0 -4.7 0.4 -21.4 81 97 A P E + F 0 73A 74 0, 0.0 -37,-0.6 0, 0.0 2,-0.3 -0.656 29.8 161.6 -85.6 114.0 -3.6 -0.6 -25.0 82 98 A E E -eF 44 72A 30 -10,-2.0 -10,-3.2 -2,-0.6 2,-0.7 -0.981 35.1-132.5-127.5 148.8 -6.1 -2.4 -27.1 83 99 A V E -eF 45 71A 0 -39,-2.9 -37,-3.5 -2,-0.3 2,-1.0 -0.874 12.7-154.5 -95.3 112.8 -6.4 -2.9 -30.9 84 100 A V E -eF 46 70A 43 -14,-1.9 -14,-2.5 -2,-0.7 2,-0.3 -0.814 26.7-146.5 -82.4 106.3 -9.9 -2.1 -32.1 85 101 A A E + F 0 69A 9 -39,-2.7 -37,-0.4 -2,-1.0 -16,-0.3 -0.552 32.4 179.3 -81.1 136.7 -9.8 -4.4 -35.1 86 102 A N E S+ 0 0 83 -18,-3.4 2,-0.3 1,-0.3 -17,-0.2 0.576 79.1 30.1-100.5 -17.2 -11.6 -3.5 -38.3 87 103 A V E + F 0 68A 28 -19,-2.0 -19,-2.2 2,-0.0 2,-0.3 -1.000 56.5 177.9-142.4 135.1 -10.3 -6.7 -40.0 88 104 A V E + F 0 67A 11 -2,-0.3 2,-0.4 -21,-0.2 -21,-0.2 -0.893 12.5 174.3-136.7 113.4 -9.4 -10.2 -38.8 89 105 A R E - F 0 66A 146 -23,-1.5 -23,-3.0 -2,-0.3 2,-0.1 -0.943 32.5-120.3-112.3 139.2 -8.3 -12.9 -41.3 90 106 A F E - F 0 65A 62 -2,-0.4 -25,-0.2 -25,-0.2 -27,-0.0 -0.489 22.7-172.4 -60.0 140.6 -7.0 -16.3 -40.8 91 107 A M 0 0 98 -27,-3.0 -26,-0.2 -2,-0.1 -1,-0.2 0.738 360.0 360.0-101.6 -42.8 -3.5 -16.7 -42.2 92 108 A D 0 0 96 -28,-0.9 -1,-0.0 0, 0.0 -2,-0.0 -0.503 360.0 360.0 -74.3 360.0 -3.0 -20.5 -41.8