==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=21-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER MEMBRANE PROTEIN 15-APR-05 1ZDX . COMPND 2 MOLECULE: OUTER MEMBRANE USHER PROTEIN FIMD; . SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; . AUTHOR M.NISHIYAMA,R.HORST,T.HERRMANN,M.VETSCH,P.BETTENDORFF, . 101 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5868.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 70 69.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 5 5.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 23 22.8 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 2 2.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 15 14.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 14 13.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 6 5.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 1 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 25 A G 0 0 68 0, 0.0 2,-0.8 0, 0.0 31,-0.1 0.000 360.0 360.0 360.0-133.6 -6.5 -12.9 -12.4 2 26 A Q + 0 0 105 1,-0.2 33,-0.3 33,-0.1 32,-0.1 -0.783 360.0 144.2 -75.1 116.0 -8.3 -13.7 -9.2 3 27 A E + 0 0 134 31,-2.4 32,-0.2 -2,-0.8 -1,-0.2 0.249 61.6 46.2-140.1 14.1 -5.8 -16.1 -7.6 4 28 A L S S- 0 0 54 30,-1.1 -1,-0.3 -3,-0.1 30,-0.0 -0.812 76.8-140.3-155.1 107.4 -6.2 -15.1 -3.9 5 29 A P - 0 0 94 0, 0.0 31,-0.1 0, 0.0 23,-0.0 -0.278 42.0 -82.1 -67.7 159.5 -9.7 -14.7 -2.3 6 30 A P S S+ 0 0 77 0, 0.0 2,-0.3 0, 0.0 22,-0.1 0.218 72.1 99.3 -69.3 178.8 -10.1 -11.8 0.2 7 31 A G E -A 27 0A 34 20,-0.7 20,-2.6 2,-0.0 2,-0.3 -0.995 69.4 -63.0 149.8-152.5 -9.1 -11.5 4.0 8 32 A T E -A 26 0A 73 -2,-0.3 2,-0.4 18,-0.3 18,-0.3 -0.985 39.9-161.3-133.9 145.6 -6.2 -10.1 6.0 9 33 A Y E -A 25 0A 24 16,-1.5 16,-1.3 -2,-0.3 2,-0.6 -0.997 19.8-130.5-131.5 130.8 -2.5 -11.2 5.9 10 34 A R E +A 24 0A 166 -2,-0.4 14,-0.3 14,-0.2 2,-0.2 -0.761 55.9 133.5 -78.6 115.7 0.4 -10.7 8.5 11 35 A V E -A 23 0A 2 12,-2.6 12,-2.0 -2,-0.6 2,-0.5 -0.887 58.2 -95.9-155.2 176.7 3.3 -9.3 6.4 12 36 A D E -Ab 22 86A 52 73,-2.2 75,-2.1 -2,-0.2 2,-0.4 -0.953 33.4-132.2-112.3 116.1 6.0 -6.7 6.1 13 37 A I E -Ab 21 87A 11 8,-2.7 7,-2.9 -2,-0.5 8,-0.6 -0.596 23.5-170.5 -64.6 125.3 5.2 -3.5 4.0 14 38 A Y E > -Ab 19 88A 65 73,-2.8 75,-2.9 -2,-0.4 3,-0.8 -0.828 1.4-171.3-123.6 86.2 8.2 -3.0 1.7 15 39 A L E > S-Ab 18 89A 3 3,-1.6 3,-1.2 -2,-0.5 75,-0.2 -0.706 76.5 -10.5 -79.7 129.2 7.9 0.4 -0.1 16 40 A N T 3 S- 0 0 59 73,-1.9 -1,-0.3 -2,-0.4 74,-0.1 0.858 132.7 -55.0 49.6 44.3 10.5 1.0 -2.8 17 41 A N T < S+ 0 0 110 -3,-0.8 2,-0.4 72,-0.7 -1,-0.3 0.794 117.2 117.8 56.5 38.3 12.3 -2.1 -1.5 18 42 A G E < -A 15 0A 27 -3,-1.2 -3,-1.6 71,-0.2 -1,-0.2 -0.989 69.4-120.1-136.3 116.2 12.4 -0.6 2.0 19 43 A Y E +A 14 0A 118 -2,-0.4 -5,-0.3 -5,-0.3 3,-0.1 -0.383 37.2 167.0 -52.2 128.3 10.7 -2.2 5.0 20 44 A M E - 0 0 45 -7,-2.9 2,-0.3 1,-0.4 -1,-0.2 0.749 56.3 -15.0-109.2 -62.3 8.2 0.3 6.5 21 45 A A E -A 13 0A 37 -8,-0.6 -8,-2.7 2,-0.1 2,-0.4 -0.974 48.2-134.8-148.7 159.7 6.0 -1.7 9.0 22 46 A T E +A 12 0A 54 -2,-0.3 2,-0.3 -10,-0.2 -10,-0.2 -0.979 52.9 106.6-119.1 125.9 5.0 -5.2 10.1 23 47 A R E S-A 11 0A 92 -12,-2.0 -12,-2.6 -2,-0.4 2,-0.3 -0.958 72.0 -71.1-172.0 175.9 1.2 -5.8 10.7 24 48 A D E -A 10 0A 71 -14,-0.3 2,-0.4 -2,-0.3 -14,-0.2 -0.681 43.5-160.3 -77.8 148.1 -1.8 -7.5 9.3 25 49 A V E -A 9 0A 5 -16,-1.3 -16,-1.5 -2,-0.3 2,-0.1 -0.955 9.6-142.1-137.2 104.3 -3.1 -5.7 6.2 26 50 A T E -A 8 0A 67 -2,-0.4 13,-3.5 -18,-0.3 -18,-0.3 -0.504 20.4-158.2 -62.7 142.1 -6.7 -6.4 5.3 27 51 A F E -AC 7 38A 19 -20,-2.6 -20,-0.7 11,-0.3 2,-0.3 -0.799 6.9-154.3-113.6 159.9 -7.3 -6.7 1.5 28 52 A N E - C 0 37A 87 9,-2.5 9,-2.7 -2,-0.3 7,-0.0 -0.917 39.3 -83.8-126.9 157.5 -10.4 -6.2 -0.7 29 53 A T E + C 0 36A 87 -2,-0.3 7,-0.3 7,-0.2 2,-0.2 -0.241 67.7 135.0 -63.7 150.4 -11.1 -7.8 -4.2 30 54 A G - 0 0 39 5,-2.4 2,-0.4 2,-0.1 -1,-0.1 -0.844 53.7 -69.6-171.2-164.2 -9.6 -5.8 -7.1 31 55 A D S S+ 0 0 158 -2,-0.2 2,-0.2 -29,-0.0 3,-0.1 -0.998 77.7 76.5-129.4 116.7 -7.6 -5.8 -10.3 32 56 A S S > S- 0 0 59 -2,-0.4 3,-1.4 -31,-0.1 -2,-0.1 -0.809 95.8 -44.8 163.2 178.8 -3.8 -6.7 -10.3 33 57 A E T 3 S+ 0 0 144 1,-0.3 -1,-0.1 -2,-0.2 46,-0.1 0.747 136.8 29.2 -25.9 -64.9 -1.6 -9.8 -10.1 34 58 A Q T 3 S- 0 0 15 2,-0.3 -31,-2.4 -32,-0.1 -30,-1.1 0.573 105.0-118.8 -83.3 -19.2 -3.4 -11.5 -7.2 35 59 A G S < S+ 0 0 5 -3,-1.4 -5,-2.4 1,-0.3 2,-0.3 0.594 89.3 76.5 82.6 13.0 -6.9 -10.1 -7.9 36 60 A I E -C 29 0A 0 -7,-0.3 -2,-0.3 -31,-0.1 -1,-0.3 -0.972 60.8-159.5-144.2 155.8 -7.0 -8.4 -4.4 37 61 A V E -C 28 0A 37 -9,-2.7 -9,-2.5 -2,-0.3 42,-0.1 -0.992 28.4 -97.3-140.3 149.3 -5.3 -5.2 -2.9 38 62 A P E -C 27 0A 10 0, 0.0 2,-1.7 0, 0.0 -11,-0.3 -0.256 29.2-118.2 -67.5 150.3 -4.5 -4.0 0.7 39 63 A C + 0 0 23 -13,-3.5 2,-0.3 27,-0.1 -13,-0.2 -0.552 45.0 177.3 -85.3 62.5 -6.8 -1.6 2.7 40 64 A L - 0 0 5 -2,-1.7 27,-2.2 27,-0.4 29,-0.2 -0.636 12.5-152.9 -82.1 137.1 -4.1 1.1 3.1 41 65 A T > - 0 0 11 -2,-0.3 4,-2.5 25,-0.2 5,-0.3 -0.435 30.1 -97.5-106.6 175.1 -5.4 4.2 4.8 42 66 A R H > S+ 0 0 64 20,-1.3 4,-2.9 1,-0.2 5,-0.2 0.959 125.9 43.9 -56.7 -49.5 -4.4 7.9 4.8 43 67 A A H > S+ 0 0 45 20,-0.5 4,-1.7 2,-0.2 -1,-0.2 0.935 114.2 48.7 -58.5 -52.2 -2.3 7.5 7.9 44 68 A Q H > S+ 0 0 58 19,-0.4 4,-1.1 2,-0.2 -1,-0.2 0.893 117.6 41.3 -58.6 -44.2 -0.7 4.2 6.7 45 69 A L H ><>S+ 0 0 0 -4,-2.5 5,-2.0 1,-0.2 3,-0.8 0.974 114.7 48.9 -68.4 -56.3 0.2 5.6 3.3 46 70 A A H ><5S+ 0 0 40 -4,-2.9 3,-1.0 -5,-0.3 -1,-0.2 0.718 101.5 67.9 -59.5 -19.3 1.3 9.0 4.6 47 71 A S H 3<5S+ 0 0 92 -4,-1.7 54,-0.4 1,-0.3 -1,-0.2 0.937 98.9 48.6 -66.8 -43.9 3.5 7.1 7.2 48 72 A M T <<5S- 0 0 6 -4,-1.1 -1,-0.3 -3,-0.8 -2,-0.2 0.458 132.4 -97.5 -69.7 -0.6 5.7 5.8 4.3 49 73 A G T < 5 + 0 0 2 -3,-1.0 48,-2.5 1,-0.3 -3,-0.2 0.632 64.4 169.1 86.3 15.0 5.8 9.5 3.1 50 74 A L B < -E 96 0B 4 -5,-2.0 2,-1.2 46,-0.2 46,-0.3 -0.473 36.3-129.4 -58.3 127.4 3.1 9.0 0.5 51 75 A N > + 0 0 49 44,-2.4 3,-1.5 -2,-0.2 4,-0.2 -0.678 29.2 179.4 -86.8 92.0 2.2 12.5 -0.7 52 76 A T G > S+ 0 0 18 -2,-1.2 3,-1.5 1,-0.3 7,-0.6 0.820 80.5 63.4 -62.6 -28.4 -1.6 12.8 -0.4 53 77 A A G 3 S+ 0 0 74 1,-0.3 -1,-0.3 5,-0.1 3,-0.1 0.677 90.5 66.5 -72.8 -15.1 -1.4 16.4 -1.6 54 78 A S G < S+ 0 0 47 -3,-1.5 2,-0.4 1,-0.2 -1,-0.3 0.529 100.4 54.9 -74.0 -7.8 0.0 15.1 -4.9 55 79 A V S X> S- 0 0 12 -3,-1.5 3,-2.8 -4,-0.2 2,-0.9 -0.866 82.3-145.2-137.5 90.4 -3.4 13.5 -5.6 56 80 A A T 34 S+ 0 0 104 -2,-0.4 -3,-0.1 1,-0.3 -2,-0.0 -0.483 94.8 40.3 -63.7 96.1 -6.3 16.0 -5.4 57 81 A G T 34 S+ 0 0 26 -2,-0.9 -1,-0.3 -5,-0.2 3,-0.1 0.200 102.9 68.6 134.6 -7.5 -8.9 13.6 -3.9 58 82 A M T X4 S+ 0 0 0 -3,-2.8 3,-1.3 -6,-0.5 -2,-0.2 0.733 85.5 66.4 -99.3 -36.0 -6.6 11.7 -1.4 59 83 A N T 3< S+ 0 0 69 -4,-0.8 -1,-0.1 -7,-0.6 -3,-0.1 0.195 101.0 50.2 -78.7 15.6 -6.0 14.5 1.0 60 84 A L T 3 S+ 0 0 112 -3,-0.1 -1,-0.3 -8,-0.1 2,-0.1 0.337 89.8 95.5-130.1 -6.0 -9.7 14.6 2.2 61 85 A L S < S- 0 0 42 -3,-1.3 -3,-0.1 1,-0.2 4,-0.0 -0.358 80.9 -68.1 -99.0 174.1 -10.5 10.9 3.0 62 86 A A > - 0 0 58 1,-0.1 3,-1.8 -2,-0.1 -20,-1.3 -0.210 27.9-130.6 -69.9 150.5 -10.5 8.9 6.2 63 87 A D T 3 S+ 0 0 94 1,-0.3 -20,-0.5 -22,-0.2 -19,-0.4 0.530 117.0 37.7 -74.2 -2.5 -7.4 7.9 8.1 64 88 A D T 3 S+ 0 0 145 -23,-0.1 -1,-0.3 -22,-0.1 2,-0.2 -0.187 91.2 130.4-133.8 38.0 -8.9 4.4 8.1 65 89 A A S < S- 0 0 24 -3,-1.8 2,-1.4 1,-0.1 -4,-0.0 -0.554 70.8-116.4 -74.9 157.1 -10.3 4.5 4.5 66 90 A C - 0 0 82 -2,-0.2 -25,-0.2 -25,-0.1 -27,-0.1 -0.729 47.2-154.5 -84.9 79.6 -9.6 1.7 2.1 67 91 A V - 0 0 8 -27,-2.2 2,-2.3 -2,-1.4 -27,-0.4 -0.391 18.6-126.1 -63.0 136.5 -7.7 4.3 -0.1 68 92 A P >>> + 0 0 54 0, 0.0 4,-2.6 0, 0.0 3,-1.2 -0.455 47.3 161.4 -75.6 64.9 -7.6 3.5 -3.8 69 93 A L H 3>5S+ 0 0 6 -2,-2.3 4,-2.1 1,-0.2 3,-0.2 0.966 73.9 37.4 -52.2 -52.9 -3.8 3.9 -3.7 70 94 A T H 345S+ 0 0 34 -3,-0.3 -1,-0.2 1,-0.2 5,-0.1 0.267 121.4 45.5 -95.7 17.1 -3.1 2.0 -6.9 71 95 A T H <45S+ 0 0 127 -3,-1.2 -1,-0.2 3,-0.1 -2,-0.2 0.526 121.0 35.7-124.9 -21.1 -6.3 3.3 -8.7 72 96 A M H <5S+ 0 0 68 -4,-2.6 2,-0.4 -3,-0.2 -2,-0.2 0.648 122.2 51.6 -99.4 -25.6 -5.9 7.1 -7.8 73 97 A V S < +D 86 0A 48 5,-1.8 5,-1.6 -2,-0.9 4,-0.3 -0.875 13.6 177.3 -80.1 100.4 4.3 -11.8 -1.6 82 106 A V T > 5S+ 0 0 77 -2,-1.0 3,-1.2 3,-0.2 -1,-0.2 0.929 75.8 61.5 -65.2 -47.4 2.7 -14.5 0.6 83 107 A G T 3 5S+ 0 0 78 1,-0.3 -1,-0.1 -3,-0.2 -2,-0.1 0.800 122.3 21.8 -51.0 -38.3 5.6 -16.8 0.0 84 108 A Q T 3 5S- 0 0 133 2,-0.1 -1,-0.3 0, 0.0 -2,-0.2 0.297 103.1-125.3-109.9 5.4 8.0 -14.3 1.7 85 109 A Q T < 5 + 0 0 108 -3,-1.2 -73,-2.2 -4,-0.3 2,-0.6 0.848 65.8 140.0 50.0 40.9 5.3 -12.5 3.7 86 110 A R E < -bD 12 81A 55 -5,-1.6 2,-2.1 -75,-0.2 -5,-1.8 -0.929 50.7-149.9-124.2 103.4 6.6 -9.3 2.0 87 111 A L E -bD 13 80A 0 -75,-2.1 -73,-2.8 -2,-0.6 -7,-0.3 -0.582 23.8-151.6 -79.7 79.0 4.0 -6.8 0.9 88 112 A N E +bD 14 79A 31 -2,-2.1 -9,-1.8 -9,-1.5 2,-0.3 -0.388 23.3 179.2 -53.0 120.1 6.1 -5.5 -2.0 89 113 A L E -bD 15 78A 3 -75,-2.9 -73,-1.9 -11,-0.2 -72,-0.7 -0.955 17.3-173.7-134.3 151.5 5.1 -1.9 -2.6 90 114 A T E - D 0 77A 46 -13,-1.7 -13,-1.1 -2,-0.3 -75,-0.1 -0.976 4.5-176.5-138.6 151.2 6.1 0.9 -4.9 91 115 A I - 0 0 4 -2,-0.3 2,-0.1 -15,-0.2 -16,-0.1 -0.950 32.7-116.9-138.9 136.3 5.2 4.6 -5.1 92 116 A P > - 0 0 23 0, 0.0 3,-1.9 0, 0.0 -16,-0.1 -0.453 30.7-114.9 -63.0 141.5 6.4 6.9 -7.9 93 117 A Q G > S+ 0 0 144 1,-0.3 3,-1.7 2,-0.2 0, 0.0 0.795 113.7 69.5 -51.7 -32.6 8.6 9.8 -6.6 94 118 A A G 3 S+ 0 0 74 1,-0.3 -1,-0.3 -40,-0.0 -40,-0.0 0.872 99.7 46.9 -49.3 -46.2 5.9 12.2 -7.7 95 119 A F G < S+ 0 0 35 -3,-1.9 -44,-2.4 -45,-0.0 2,-0.4 -0.074 95.6 99.3 -94.4 38.4 3.6 10.9 -4.9 96 120 A M B < -E 50 0B 12 -3,-1.7 -46,-0.2 -46,-0.3 -47,-0.1 -0.938 68.0-141.9-125.2 142.4 6.3 11.1 -2.2 97 121 A S - 0 0 54 -48,-2.5 -1,-0.1 -2,-0.4 -47,-0.1 0.926 62.9 -80.9 -69.7 -48.2 6.7 13.9 0.3 98 122 A N S S+ 0 0 157 -49,-0.2 2,-0.4 1,-0.1 -49,-0.0 0.047 111.0 48.2 172.9 -27.0 10.5 14.0 0.3 99 123 A R - 0 0 155 -50,-0.1 2,-0.6 -49,-0.0 -2,-0.3 -0.992 50.5-168.9-137.6 126.6 11.5 11.1 2.6 100 124 A A 0 0 41 -2,-0.4 -51,-0.2 1,-0.1 -52,-0.1 -0.926 360.0 360.0-111.3 96.0 10.2 7.5 2.7 101 125 A R 0 0 230 -2,-0.6 -1,-0.1 -54,-0.4 -53,-0.1 0.876 360.0 360.0-104.3 360.0 11.7 6.5 6.1