==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=13-SEP-2013 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSPORT PROTEIN 23-NOV-12 3ZD0 . COMPND 2 MOLECULE: P7 PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: HEPATITIS C VIRUS; . AUTHOR T.L.FOSTER,G.S.THOMPSON,A.P.KALVERDA,J.KANKANALA,J.THOMPSON, . 85 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6867.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 71 83.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 8 9.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 61 71.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 2 A P > 0 0 143 0, 0.0 3,-0.6 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 94.6 -48.0 5.2 -0.7 2 3 A L T 3> + 0 0 141 1,-0.2 4,-1.0 2,-0.2 0, 0.0 0.670 360.0 66.9 -71.0 -17.7 -46.8 1.8 0.4 3 4 A G H 3> S+ 0 0 37 1,-0.2 4,-1.8 2,-0.2 -1,-0.2 0.836 89.0 63.0 -72.5 -33.9 -44.2 1.9 -2.4 4 5 A S H <> S+ 0 0 79 -3,-0.6 4,-1.6 1,-0.2 3,-0.2 0.937 104.3 45.6 -57.9 -50.9 -42.2 4.7 -0.8 5 6 A P H > S+ 0 0 80 0, 0.0 4,-2.4 0, 0.0 -1,-0.2 0.857 110.0 56.1 -61.3 -35.5 -41.2 2.6 2.3 6 7 A E H X S+ 0 0 124 -4,-1.0 4,-1.9 1,-0.2 -2,-0.2 0.877 107.4 48.4 -64.0 -38.3 -40.4 -0.3 0.0 7 8 A F H X S+ 0 0 149 -4,-1.8 4,-1.7 -3,-0.2 -1,-0.2 0.820 111.7 50.6 -71.0 -31.7 -37.9 1.8 -1.9 8 9 A A H X S+ 0 0 59 -4,-1.6 4,-1.6 2,-0.2 -2,-0.2 0.890 110.9 47.1 -73.2 -41.0 -36.4 3.0 1.3 9 10 A A H X S+ 0 0 69 -4,-2.4 4,-1.0 1,-0.2 -2,-0.2 0.887 113.8 47.8 -67.9 -40.2 -35.9 -0.4 2.8 10 11 A M H X S+ 0 0 128 -4,-1.9 4,-2.0 1,-0.2 3,-0.3 0.878 107.7 56.1 -68.3 -38.7 -34.4 -1.8 -0.5 11 12 A D H X S+ 0 0 92 -4,-1.7 4,-1.9 1,-0.2 -1,-0.2 0.895 103.8 53.5 -60.8 -41.8 -32.0 1.2 -0.8 12 13 A Y H X S+ 0 0 167 -4,-1.6 4,-1.3 1,-0.2 -1,-0.2 0.813 107.7 52.9 -63.3 -30.5 -30.6 0.5 2.7 13 14 A K H X S+ 0 0 134 -4,-1.0 4,-2.3 -3,-0.3 3,-0.2 0.933 108.6 47.0 -70.2 -47.9 -29.9 -3.0 1.6 14 15 A D H X S+ 0 0 87 -4,-2.0 4,-2.1 1,-0.2 -2,-0.2 0.819 110.9 54.1 -63.6 -31.3 -28.0 -2.0 -1.6 15 16 A D H X S+ 0 0 106 -4,-1.9 4,-1.2 -5,-0.2 -1,-0.2 0.829 109.8 46.9 -72.1 -32.5 -26.0 0.5 0.5 16 17 A D H X S+ 0 0 100 -4,-1.3 4,-2.1 -3,-0.2 -2,-0.2 0.885 114.0 46.3 -75.9 -40.9 -25.0 -2.2 3.0 17 18 A D H X S+ 0 0 75 -4,-2.3 4,-2.0 2,-0.2 5,-0.2 0.896 111.8 51.2 -68.2 -41.9 -23.9 -4.7 0.3 18 19 A K H X S+ 0 0 94 -4,-2.1 4,-1.5 -5,-0.2 -1,-0.2 0.865 110.5 50.6 -63.5 -37.0 -22.0 -2.1 -1.7 19 20 A A H X S+ 0 0 41 -4,-1.2 4,-2.4 2,-0.2 3,-0.2 0.964 108.7 49.2 -65.8 -53.0 -20.1 -1.1 1.5 20 21 A L H X S+ 0 0 95 -4,-2.1 4,-1.8 1,-0.2 -2,-0.2 0.898 112.2 48.2 -54.4 -46.6 -19.1 -4.7 2.5 21 22 A E H X S+ 0 0 79 -4,-2.0 4,-1.4 1,-0.2 -1,-0.2 0.840 110.7 53.2 -65.7 -32.5 -17.8 -5.4 -1.0 22 23 A N H X S+ 0 0 14 -4,-1.5 4,-3.4 -3,-0.2 5,-0.3 0.973 107.2 48.7 -67.1 -54.5 -15.8 -2.1 -1.1 23 24 A L H X S+ 0 0 109 -4,-2.4 4,-2.6 1,-0.2 5,-0.2 0.915 109.1 53.1 -50.7 -52.0 -14.0 -2.7 2.2 24 25 A V H X S+ 0 0 93 -4,-1.8 4,-0.7 -5,-0.2 -1,-0.2 0.883 118.4 35.6 -54.8 -42.8 -12.9 -6.2 1.3 25 26 A V H >X S+ 0 0 95 -4,-1.4 4,-1.4 -3,-0.3 3,-0.9 0.944 115.7 52.1 -77.0 -51.6 -11.4 -5.0 -2.0 26 27 A L H 3X S+ 0 0 7 -4,-3.4 4,-2.4 1,-0.3 -2,-0.2 0.840 105.1 59.4 -53.5 -35.1 -10.1 -1.6 -0.9 27 28 A N H 3X S+ 0 0 107 -4,-2.6 4,-2.5 -5,-0.3 -1,-0.3 0.871 102.3 52.1 -62.4 -38.0 -8.3 -3.4 2.0 28 29 A A H S+ 0 0 78 -4,-1.3 5,-2.3 2,-0.2 4,-1.2 0.832 109.6 57.9 -77.5 -33.5 11.2 -2.0 0.1 41 42 A L H <>S+ 0 0 67 -4,-1.7 5,-0.9 3,-0.2 -2,-0.2 0.951 116.1 36.9 -57.9 -46.5 11.8 -1.0 3.6 42 43 A V H <5S+ 0 0 112 -4,-1.9 4,-0.2 3,-0.2 -2,-0.2 0.956 132.8 25.5 -70.4 -53.3 13.3 -4.4 4.3 43 44 A F H <5S+ 0 0 168 -4,-2.7 -3,-0.2 -5,-0.2 -2,-0.2 0.946 131.2 33.3 -76.2 -54.4 15.0 -4.9 0.9 44 45 A F T <5S+ 0 0 62 -4,-1.2 5,-0.2 -5,-0.3 -3,-0.2 0.886 113.8 54.8 -75.8 -45.7 15.7 -1.4 -0.4 45 46 A C T >>< + 0 0 24 -5,-2.3 4,-1.3 -4,-0.1 3,-0.5 0.974 69.6 123.6 -54.9 -80.9 16.4 0.5 2.8 46 47 A A T 34 S+ 0 0 203 -3,-0.5 4,-0.6 -4,-0.2 3,-0.5 0.710 84.8 64.7 -91.0 -25.4 23.4 1.1 1.6 49 50 A Y H >X S+ 0 0 76 -4,-1.3 4,-2.6 -5,-0.2 3,-0.5 0.764 93.2 62.5 -69.3 -26.3 20.7 3.6 0.7 50 51 A I H 34 S+ 0 0 118 -5,-0.2 -1,-0.2 1,-0.2 -2,-0.1 0.806 89.0 70.2 -68.9 -29.5 22.1 6.1 3.2 51 52 A K H <4 S- 0 0 174 -3,-0.5 -1,-0.2 -4,-0.3 -2,-0.2 0.873 137.7 -57.1 -55.1 -39.2 25.4 6.2 1.2 52 53 A G H << S+ 0 0 73 -4,-0.6 2,-0.5 -3,-0.5 -2,-0.2 0.348 102.7 112.9 162.3 34.1 23.5 8.1 -1.5 53 54 A R < + 0 0 135 -4,-2.6 4,-0.2 -5,-0.2 -1,-0.1 -0.874 23.6 168.3-129.1 96.0 20.5 6.1 -2.8 54 55 A L >> + 0 0 144 -2,-0.5 3,-2.7 1,-0.2 4,-0.9 0.659 50.9 107.8 -75.6 -20.1 17.1 7.7 -2.0 55 56 A A H >> S+ 0 0 46 1,-0.3 4,-1.7 2,-0.2 3,-0.6 0.773 73.6 56.9 -26.5 -54.8 15.4 5.2 -4.3 56 57 A P H 3> S+ 0 0 0 0, 0.0 4,-1.9 0, 0.0 -1,-0.3 0.886 100.9 59.8 -48.7 -42.9 13.9 3.3 -1.4 57 58 A G H <> S+ 0 0 30 -3,-2.7 4,-2.6 1,-0.2 -2,-0.2 0.901 104.2 47.7 -50.8 -49.2 12.3 6.5 -0.2 58 59 A A H S+ 0 0 9 0, 0.0 4,-2.6 0, 0.0 -1,-0.2 0.855 109.2 55.7 -65.8 -38.1 -2.8 2.6 -1.0 68 69 A L H > S+ 0 0 106 -4,-0.5 4,-2.0 2,-0.2 -2,-0.2 0.969 111.7 42.2 -58.7 -55.1 -4.1 5.8 0.6 69 70 A L H X S+ 0 0 75 -4,-2.4 4,-3.1 1,-0.2 5,-0.4 0.940 113.2 53.5 -56.2 -51.1 -5.3 7.1 -2.8 70 71 A L H X S+ 0 0 57 -4,-2.5 4,-2.6 -5,-0.2 -1,-0.2 0.908 108.2 49.8 -51.2 -49.4 -6.7 3.7 -3.8 71 72 A L H < S+ 0 0 76 -4,-2.6 -1,-0.2 1,-0.2 -2,-0.2 0.916 115.6 43.0 -57.1 -45.8 -8.8 3.5 -0.6 72 73 A L H < S+ 0 0 80 -4,-2.0 -2,-0.2 2,-0.2 -1,-0.2 0.858 119.5 41.3 -71.2 -38.6 -10.2 7.0 -1.1 73 74 A L H < S+ 0 0 115 -4,-3.1 -2,-0.2 1,-0.2 -1,-0.2 0.747 117.3 48.4 -81.6 -23.6 -10.9 6.6 -4.9 74 75 A A S < S+ 0 0 42 -4,-2.6 -1,-0.2 -5,-0.4 -2,-0.2 0.424 104.0 80.7 -91.4 -0.4 -12.2 3.1 -4.4 75 76 A L S S- 0 0 39 -3,-0.2 5,-0.1 -5,-0.2 -56,-0.0 -0.890 92.7-102.3-109.3 135.6 -14.3 4.4 -1.6 76 77 A P > - 0 0 43 0, 0.0 4,-2.2 0, 0.0 5,-0.2 -0.013 31.2-114.1 -50.0 158.3 -17.7 6.2 -2.2 77 78 A P H > S+ 0 0 91 0, 0.0 4,-2.0 0, 0.0 5,-0.2 0.941 116.7 46.0 -62.8 -50.8 -17.8 10.1 -1.9 78 79 A R H > S+ 0 0 214 1,-0.2 4,-1.4 2,-0.2 5,-0.1 0.752 113.1 54.6 -64.6 -23.0 -20.0 10.2 1.1 79 80 A A H > S+ 0 0 37 2,-0.2 4,-0.7 1,-0.2 -1,-0.2 0.922 111.5 39.6 -76.7 -47.1 -17.8 7.5 2.7 80 81 A Y H < S+ 0 0 108 -4,-2.2 4,-0.3 1,-0.2 -2,-0.2 0.765 114.7 56.5 -74.0 -24.5 -14.5 9.3 2.3 81 82 A A H >< S+ 0 0 51 -4,-2.0 3,-1.2 -5,-0.2 -1,-0.2 0.895 104.4 50.0 -72.7 -41.5 -16.2 12.6 3.2 82 83 A A H 3< S+ 0 0 88 -4,-1.4 -1,-0.2 1,-0.3 -2,-0.2 0.694 105.6 59.5 -69.8 -18.7 -17.5 11.3 6.6 83 84 A A T 3< S+ 0 0 80 -4,-0.7 -1,-0.3 -5,-0.1 2,-0.2 0.570 92.0 88.1 -84.9 -10.6 -13.9 10.0 7.3 84 85 A A < 0 0 67 -3,-1.2 -3,-0.0 -4,-0.3 0, 0.0 -0.629 360.0 360.0 -90.7 148.6 -12.6 13.6 7.0 85 86 A S 0 0 185 -2,-0.2 -1,-0.1 0, 0.0 -2,-0.1 -0.058 360.0 360.0-163.5 360.0 -12.4 16.0 9.9