==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=6-SEP-2013 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RNA BINDING PROTEIN 16-JAN-13 3ZJ1 . COMPND 2 MOLECULE: NUCLEAR POLYADENYLATED RNA-BINDING PROTEIN NAB2; . SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; . AUTHOR S.MARTINEZ-LUBRERAS,C.M.SANTIVERI,Y.MIRASSOU,S.ZORRILLA, . 83 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7508.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 36 43.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 2 2.4 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 3 3.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 7 8.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 22 26.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 251 A G 0 0 131 0, 0.0 2,-0.3 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0-169.2 3.2 3.6 4.8 2 252 A S - 0 0 95 2,-0.1 0, 0.0 1,-0.0 0, 0.0 -0.975 360.0-154.2-164.5 162.6 6.5 4.3 2.9 3 253 A F + 0 0 211 -2,-0.3 -1,-0.0 0, 0.0 0, 0.0 0.155 50.9 126.3-133.5 12.5 9.5 6.7 2.9 4 254 A T - 0 0 89 1,-0.1 -2,-0.1 2,-0.0 0, 0.0 -0.406 64.1-127.5 -77.1 153.9 10.7 6.8 -0.8 5 255 A P + 0 0 114 0, 0.0 2,-0.1 0, 0.0 -1,-0.1 0.257 68.1 129.3 -81.9 9.7 11.2 10.0 -2.9 6 256 A T - 0 0 104 1,-0.1 2,-0.1 3,-0.0 3,-0.1 -0.421 51.5-135.8 -73.6 140.1 8.9 8.6 -5.6 7 257 A K - 0 0 180 1,-0.2 -1,-0.1 -2,-0.1 -3,-0.0 -0.371 41.8 -60.4 -86.8 168.9 5.9 10.5 -7.1 8 258 A K - 0 0 151 1,-0.1 -1,-0.2 -2,-0.1 3,-0.1 -0.046 29.6-144.2 -50.8 149.5 2.3 9.3 -7.8 9 259 A E - 0 0 119 1,-0.5 2,-0.2 35,-0.1 -1,-0.1 0.224 64.4 -81.0 -97.0 9.7 1.6 6.4 -10.3 10 260 A G S S+ 0 0 29 1,-0.2 -1,-0.5 36,-0.1 36,-0.2 -0.511 83.1 94.7 107.5 176.3 -1.7 8.1 -11.4 11 261 A R - 0 0 23 34,-0.2 -1,-0.2 -2,-0.2 17,-0.2 0.841 61.6-111.5 71.5 125.2 -5.3 8.4 -10.1 12 262 A C - 0 0 16 15,-2.7 6,-0.0 14,-0.1 15,-0.0 -0.496 18.9-154.0 -76.1 151.9 -6.9 11.1 -7.9 13 263 A R S S+ 0 0 206 -2,-0.2 4,-0.1 1,-0.1 -1,-0.1 0.706 87.3 51.3-110.1 -29.4 -7.8 10.1 -4.3 14 264 A L S > S+ 0 0 107 2,-0.1 3,-1.4 3,-0.0 -1,-0.1 0.717 93.0 156.1 -76.7 -24.4 -10.7 12.5 -3.3 15 265 A F T 3 + 0 0 33 1,-0.4 46,-0.1 2,-0.2 45,-0.1 -0.147 55.1 20.6 -55.1 139.0 -12.6 11.5 -6.5 16 266 A P T 3 S+ 0 0 25 0, 0.0 2,-1.1 0, 0.0 -1,-0.4 -0.996 128.5 55.4 -74.0 -8.5 -15.5 11.5 -7.3 17 267 A H S < S+ 0 0 84 -3,-1.4 -2,-0.2 -4,-0.1 -4,-0.0 -0.062 80.8 123.6 -83.5 34.6 -15.8 14.0 -4.5 18 268 A C > - 0 0 25 -2,-1.1 3,-0.5 1,-0.1 6,-0.0 -0.850 48.2-159.2-102.1 132.4 -13.1 16.5 -5.9 19 269 A P T 3 S+ 0 0 116 0, 0.0 -1,-0.1 0, 0.0 -2,-0.0 0.678 82.8 70.0 -83.1 -18.2 -13.8 20.2 -6.6 20 270 A L T >> + 0 0 107 2,-0.1 3,-2.6 1,-0.1 4,-2.5 0.132 54.5 139.5 -91.3 17.6 -10.9 20.8 -9.1 21 271 A G T <4 S+ 0 0 56 -3,-0.5 -1,-0.1 1,-0.3 -3,-0.0 -0.418 71.6 49.5 -65.5 74.0 -12.3 18.7 -12.0 22 272 A R T 34 S+ 0 0 254 -2,-2.2 -1,-0.3 2,-0.0 -2,-0.1 0.036 129.8 11.9 176.3 -33.5 -11.2 21.3 -14.6 23 273 A S T <4 S+ 0 0 111 -3,-2.6 -2,-0.2 0, 0.0 -3,-0.1 0.348 84.5 133.2-146.8 -1.7 -7.5 21.9 -13.6 24 274 A C < - 0 0 34 -4,-2.5 4,-0.1 1,-0.1 -12,-0.1 -0.331 50.5-141.3 -58.8 136.4 -6.6 19.1 -11.0 25 275 A P S S+ 0 0 117 0, 0.0 2,-0.3 0, 0.0 -1,-0.1 0.603 75.7 78.4 -79.7 -13.3 -3.1 17.3 -11.8 26 276 A H S S- 0 0 73 -16,-0.1 2,-0.4 1,-0.1 -14,-0.1 -0.708 92.7 -90.6-103.1 152.1 -4.2 13.7 -10.9 27 277 A A - 0 0 31 -2,-0.3 -15,-2.7 18,-0.1 -1,-0.1 -0.407 28.7-159.1 -74.4 115.7 -6.3 11.3 -13.0 28 278 A H - 0 0 42 -2,-0.4 2,-0.9 -17,-0.2 3,-0.1 -0.842 20.1-136.7 -82.0 111.1 -10.1 11.4 -12.6 29 279 A P + 0 0 0 0, 0.0 19,-0.2 0, 0.0 18,-0.1 -0.648 48.4 144.7 -76.8 104.5 -11.4 8.0 -13.9 30 280 A T + 0 0 104 -2,-0.9 2,-0.3 17,-0.5 18,-0.1 0.248 55.4 57.0-125.2 6.6 -14.5 9.1 -16.0 31 281 A K S S- 0 0 137 16,-0.3 18,-2.4 -3,-0.1 2,-0.3 -0.970 87.3-103.8-141.1 150.4 -14.3 6.5 -18.9 32 282 A V B -a 49 0A 78 -2,-0.3 18,-0.2 16,-0.2 -2,-0.0 -0.629 54.2 -96.9 -80.3 130.0 -14.3 2.7 -19.1 33 283 A C - 0 0 17 16,-2.6 -1,-0.1 -2,-0.3 6,-0.0 -0.117 17.6-139.1 -57.4 142.8 -10.7 1.5 -19.8 34 284 A N S S+ 0 0 142 1,-0.2 -1,-0.1 -3,-0.1 -2,-0.0 0.786 100.4 30.9 -64.2 -31.7 -9.6 0.6 -23.4 35 285 A E S > S+ 0 0 117 2,-0.1 3,-1.8 0, 0.0 -1,-0.2 0.506 89.0 165.5-118.0 -9.6 -7.6 -2.6 -22.3 36 286 A Y T 3 + 0 0 73 1,-0.3 13,-0.0 2,-0.2 14,-0.0 -0.197 63.3 23.8 -44.7 139.2 -9.4 -4.0 -19.3 37 287 A P T 3 S+ 0 0 91 0, 0.0 2,-0.5 0, 0.0 -1,-0.3 -0.995 121.8 60.0 -80.8 0.4 -9.2 -6.7 -17.9 38 288 A N S < S+ 0 0 125 -3,-1.8 -2,-0.2 2,-0.0 0, 0.0 0.131 76.3 141.0 -78.7 20.1 -5.7 -7.0 -19.5 39 289 A C - 0 0 30 -2,-0.5 7,-0.0 1,-0.1 -3,-0.0 -0.524 44.5-160.0 -82.8 128.1 -4.4 -3.8 -17.6 40 290 A P + 0 0 117 0, 0.0 -1,-0.1 0, 0.0 -2,-0.0 0.606 66.9 102.2 -78.3 -11.7 -0.8 -3.6 -16.1 41 291 A K S S- 0 0 60 1,-0.1 3,-0.1 4,-0.0 -2,-0.1 -0.576 76.4-126.0 -66.9 128.6 -1.9 -0.7 -13.8 42 292 A P >> - 0 0 69 0, 0.0 3,-0.9 0, 0.0 4,-0.6 -0.280 46.7 -70.4 -65.6 163.3 -2.5 -2.0 -10.2 43 293 A P T 34 S+ 0 0 102 0, 0.0 0, 0.0 0, 0.0 0, 0.0 -0.399 123.1 25.3 -61.6 122.2 -5.9 -1.2 -8.6 44 294 A G T 34 S+ 0 0 35 -2,-0.2 -35,-0.1 -3,-0.1 -34,-0.1 0.741 107.6 73.0 94.7 30.6 -6.1 2.6 -7.9 45 295 A T T <4 + 0 0 18 -3,-0.9 -34,-0.2 3,-0.1 -18,-0.1 0.532 63.7 102.7-138.5 -31.3 -3.6 4.0 -10.5 46 296 A C < - 0 0 8 -4,-0.6 -36,-0.1 -36,-0.2 -2,-0.1 -0.287 68.6-131.7 -60.3 141.6 -5.2 3.8 -14.0 47 297 A E S S+ 0 0 122 -36,-0.1 -17,-0.5 -18,-0.1 -16,-0.3 0.543 88.4 55.2 -62.7 -11.3 -6.7 6.8 -15.7 48 298 A F S S- 0 0 51 -19,-0.2 2,-0.3 -18,-0.1 -16,-0.2 -0.602 87.2 -94.9-123.5-176.6 -9.9 4.7 -16.5 49 299 A L B -a 32 0A 4 -18,-2.4 -16,-2.6 -2,-0.2 -13,-0.2 -0.716 22.7-161.0-103.7 146.7 -12.6 2.5 -14.9 50 300 A H - 0 0 1 -2,-0.3 2,-2.2 -18,-0.2 4,-0.4 -0.989 18.8-138.7-133.0 114.8 -12.5 -1.3 -14.5 51 301 A P S S+ 0 0 68 0, 0.0 -2,-0.0 0, 0.0 -19,-0.0 -0.171 100.1 35.4 -76.2 48.5 -15.9 -3.1 -13.8 52 302 A N S S+ 0 0 111 -2,-2.2 3,-0.2 -15,-0.0 4,-0.2 0.217 127.8 26.1-161.0 -59.2 -14.3 -5.5 -11.2 53 303 A E S > S+ 0 0 66 1,-0.2 3,-0.8 2,-0.1 2,-0.5 0.960 133.2 35.7 -75.9 -64.8 -11.5 -3.6 -9.3 54 304 A D T 3> S+ 0 0 15 -4,-0.4 4,-1.9 1,-0.2 -1,-0.2 0.024 86.9 110.4 -81.0 28.7 -13.0 -0.0 -9.7 55 305 A E H 3> S+ 0 0 109 -2,-0.5 4,-1.6 -3,-0.2 -1,-0.2 0.882 77.0 51.2 -75.9 -36.7 -16.5 -1.5 -9.4 56 306 A E H <> S+ 0 0 153 -3,-0.8 4,-2.2 2,-0.2 -1,-0.2 0.796 106.2 57.0 -65.1 -29.0 -16.9 0.2 -6.0 57 307 A L H > S+ 0 0 26 2,-0.2 4,-2.5 1,-0.2 -2,-0.2 0.946 104.3 50.4 -70.3 -44.4 -15.8 3.4 -7.7 58 308 A M H X S+ 0 0 69 -4,-1.9 4,-2.3 2,-0.2 -2,-0.2 0.886 110.9 50.6 -55.7 -38.0 -18.7 3.1 -10.2 59 309 A K H X S+ 0 0 130 -4,-1.6 4,-2.5 2,-0.2 -2,-0.2 0.910 109.4 49.7 -66.6 -40.2 -20.9 2.6 -7.1 60 310 A E H X S+ 0 0 49 -4,-2.2 4,-2.1 2,-0.2 -2,-0.2 0.873 111.1 50.0 -65.5 -36.8 -19.4 5.8 -5.5 61 311 A M H X S+ 0 0 46 -4,-2.5 4,-2.2 2,-0.2 -2,-0.2 0.920 111.9 46.9 -67.6 -43.3 -20.1 7.7 -8.9 62 312 A E H X S+ 0 0 87 -4,-2.3 4,-3.0 2,-0.2 5,-0.3 0.917 109.4 56.9 -62.4 -41.0 -23.7 6.4 -8.9 63 313 A R H X S+ 0 0 99 -4,-2.5 4,-1.9 2,-0.2 -2,-0.2 0.922 111.7 39.6 -56.0 -51.3 -23.9 7.5 -5.1 64 314 A T H X S+ 0 0 43 -4,-2.1 4,-2.2 2,-0.2 -1,-0.2 0.862 114.9 55.1 -71.4 -31.2 -23.0 11.2 -5.9 65 315 A R H X S+ 0 0 149 -4,-2.2 4,-2.3 2,-0.2 -2,-0.2 0.927 110.0 44.3 -65.3 -45.4 -25.1 11.1 -9.1 66 316 A E H X S+ 0 0 119 -4,-3.0 4,-2.2 2,-0.2 -2,-0.2 0.867 112.6 53.3 -70.4 -31.8 -28.3 10.0 -7.1 67 317 A E H X S+ 0 0 90 -4,-1.9 4,-1.8 -5,-0.3 -2,-0.2 0.915 111.5 45.5 -60.9 -43.8 -27.4 12.6 -4.4 68 318 A F H X S+ 0 0 112 -4,-2.2 4,-2.0 2,-0.2 -2,-0.2 0.863 110.8 53.4 -70.1 -34.4 -27.2 15.3 -7.2 69 319 A Q H X S+ 0 0 105 -4,-2.3 4,-2.6 2,-0.2 -2,-0.2 0.912 108.2 50.2 -63.9 -42.1 -30.5 13.9 -8.7 70 320 A K H X S+ 0 0 147 -4,-2.2 4,-1.8 2,-0.2 -2,-0.2 0.883 109.7 51.1 -65.5 -36.5 -32.2 14.3 -5.3 71 321 A R H X S+ 0 0 143 -4,-1.8 4,-1.4 2,-0.2 -2,-0.2 0.893 112.7 46.0 -66.5 -37.9 -30.9 17.9 -5.1 72 322 A K H X S+ 0 0 125 -4,-2.0 4,-2.2 2,-0.2 -2,-0.2 0.870 108.2 56.2 -73.7 -34.8 -32.4 18.6 -8.6 73 323 A A H X S+ 0 0 37 -4,-2.6 4,-0.7 1,-0.2 -2,-0.2 0.890 107.6 49.8 -60.7 -38.9 -35.7 16.9 -7.6 74 324 A D H < S+ 0 0 111 -4,-1.8 -2,-0.2 2,-0.2 -1,-0.2 0.869 109.2 52.0 -68.2 -36.2 -35.9 19.4 -4.7 75 325 A L H >< S+ 0 0 128 -4,-1.4 3,-1.3 1,-0.2 -2,-0.2 0.924 111.0 45.4 -64.2 -47.6 -35.2 22.4 -7.1 76 326 A L H 3< S+ 0 0 63 -4,-2.2 -1,-0.2 1,-0.3 -2,-0.2 0.590 109.3 58.3 -74.9 -12.2 -38.0 21.3 -9.5 77 327 A A T 3< S+ 0 0 49 -4,-0.7 2,-0.4 -5,-0.2 -1,-0.3 0.114 95.2 78.7 -98.1 14.9 -40.3 20.8 -6.5 78 328 A A S < S- 0 0 55 -3,-1.3 3,-0.1 1,-0.1 -4,-0.0 -0.992 114.0 -4.6-125.3 131.5 -39.8 24.5 -5.4 79 329 A K S S+ 0 0 222 -2,-0.4 2,-0.3 1,-0.1 -1,-0.1 0.615 142.2 46.3 59.7 14.0 -41.8 27.3 -7.1 80 330 A R S S- 0 0 141 -5,-0.1 -1,-0.1 0, 0.0 0, 0.0 -0.936 86.4-115.7-173.5 158.5 -42.9 24.3 -9.3 81 331 A K - 0 0 170 -2,-0.3 -4,-0.1 -4,-0.1 2,-0.1 -0.874 29.7-105.8-114.6 149.7 -44.2 20.7 -8.8 82 332 A P 0 0 92 0, 0.0 -5,-0.0 0, 0.0 -9,-0.0 -0.401 360.0 360.0 -71.1 151.4 -42.7 17.3 -9.8 83 333 A V 0 0 195 -2,-0.1 0, 0.0 0, 0.0 0, 0.0 -0.962 360.0 360.0-163.0 360.0 -44.2 15.4 -12.8