==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=6-SEP-2013 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RNA BINDING PROTEIN 16-JAN-13 3ZJ2 . COMPND 2 MOLECULE: NUCLEAR POLYADENYLATED RNA-BINDING PROTEIN NAB2; . SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; . AUTHOR S.MARTINEZ-LUBRERAS,C.M.SANTIVERI,Y.MIRASSOU,S.ZORRILLA, . 71 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5285.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 30 42.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 4 5.6 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 2 2.8 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 1 1.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 6 8.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 10 14.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 2 2.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 331 A G 0 0 133 0, 0.0 3,-0.1 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 158.8 7.9 -3.9 -0.8 2 332 A S + 0 0 128 1,-0.1 2,-0.3 2,-0.0 0, 0.0 0.644 360.0 35.2 -84.6 -16.1 4.0 -4.2 -0.9 3 333 A V S S- 0 0 109 0, 0.0 3,-0.4 0, 0.0 2,-0.3 -0.993 76.5-128.4-142.4 141.2 3.7 -3.6 -4.7 4 334 A Q + 0 0 201 -2,-0.3 -2,-0.0 1,-0.2 0, 0.0 0.032 65.0 128.3 -79.6 25.1 6.1 -4.5 -7.6 5 335 A T - 0 0 79 -2,-0.3 -1,-0.2 1,-0.1 3,-0.1 0.825 53.7-151.3 -55.2 -43.2 6.2 -0.9 -9.0 6 336 A G + 0 0 68 -3,-0.4 2,-0.3 1,-0.2 -1,-0.1 0.653 61.3 100.2 77.2 18.2 10.1 -0.6 -9.2 7 337 A I + 0 0 36 2,-0.0 2,-0.3 32,-0.0 -1,-0.2 -0.999 43.6 176.3-140.6 130.5 10.0 3.2 -8.6 8 338 A V - 0 0 79 -2,-0.3 16,-1.4 14,-0.2 2,-0.4 -0.984 18.6-144.6-135.4 141.6 10.6 5.2 -5.4 9 339 A L B -a 24 0A 67 -2,-0.3 16,-0.2 14,-0.2 2,-0.0 -0.906 28.3-116.4-113.9 135.0 10.7 9.1 -4.9 10 340 A C - 0 0 37 14,-2.7 6,-0.0 -2,-0.4 -1,-0.0 -0.263 7.8-125.0 -80.9 159.4 13.2 10.5 -2.3 11 341 A K S S+ 0 0 180 1,-0.2 -1,-0.1 2,-0.1 -2,-0.0 0.836 109.9 27.7 -66.1 -36.5 12.6 12.5 1.0 12 342 A F S > S+ 0 0 123 1,-0.2 3,-1.9 2,-0.0 2,-0.3 0.725 80.6 175.0-105.1 -30.6 14.8 15.5 -0.1 13 343 A G G > S+ 0 0 13 1,-0.3 3,-1.6 2,-0.2 46,-0.3 -0.412 77.7 14.3 68.9-116.5 14.6 15.5 -3.9 14 344 A A G 3 S+ 0 0 28 -2,-0.3 -1,-0.3 1,-0.3 17,-0.1 0.599 132.8 53.8 -66.4 -11.7 16.4 18.6 -5.3 15 345 A L G < S+ 0 0 135 -3,-1.9 -1,-0.3 16,-0.1 -2,-0.2 0.331 77.0 130.1-101.9 0.5 18.0 18.9 -1.8 16 346 A C < - 0 0 8 -3,-1.6 44,-0.3 1,-0.1 9,-0.0 -0.396 49.1-151.3 -62.4 132.1 19.4 15.3 -1.7 17 347 A S + 0 0 48 -2,-0.1 -1,-0.1 51,-0.1 51,-0.1 0.512 67.5 74.1 -93.9 -8.5 23.1 15.4 -0.7 18 348 A N > - 0 0 38 49,-0.1 3,-0.7 1,-0.1 42,-0.3 -0.938 61.9-153.1-114.8 127.2 24.6 12.3 -2.4 19 349 A P T 3 S+ 0 0 28 0, 0.0 42,-0.3 0, 0.0 39,-0.2 0.624 91.3 51.2 -76.2 -15.1 25.2 12.2 -6.3 20 350 A S T 3 S+ 0 0 112 37,-0.1 45,-0.0 40,-0.1 37,-0.0 0.472 73.5 139.5-104.3 -7.2 24.9 8.3 -6.8 21 351 A C < - 0 0 11 -3,-0.7 37,-0.8 1,-0.1 -5,-0.0 -0.121 46.5-146.5 -40.7 127.3 21.5 7.8 -4.9 22 352 A P + 0 0 93 0, 0.0 -14,-0.2 0, 0.0 -1,-0.1 0.562 65.7 90.7 -80.5 -10.4 19.3 5.2 -6.8 23 353 A F S S- 0 0 97 1,-0.1 2,-0.4 -16,-0.1 -14,-0.2 0.032 83.6 -71.0 -87.5-171.2 15.9 6.8 -6.0 24 354 A G B +a 9 0A 2 -16,-1.4 -14,-2.7 31,-0.1 33,-0.2 -0.725 48.5 160.9 -97.5 125.3 13.6 9.5 -7.6 25 355 A H B -B 56 0B 0 31,-2.2 31,-1.7 -2,-0.4 -12,-0.0 -0.843 38.2 -93.3-132.3 163.7 14.4 13.2 -7.9 26 356 A P - 0 0 7 0, 0.0 27,-0.1 0, 0.0 -1,-0.1 -0.050 58.9 -62.9 -75.1 175.5 13.0 16.1 -10.2 27 357 A T > - 0 0 0 25,-0.6 3,-1.1 6,-0.3 6,-0.2 -0.354 41.2-137.7 -53.9 135.6 14.4 17.5 -13.5 28 358 A P T 3 S+ 0 0 28 0, 0.0 3,-0.2 0, 0.0 -1,-0.1 0.729 99.2 70.3 -73.4 -18.9 17.9 19.1 -12.9 29 359 A A T 3 S+ 0 0 47 18,-0.9 2,-0.2 20,-0.3 19,-0.1 0.477 114.2 20.5 -74.3 -1.8 17.0 22.0 -15.2 30 360 A N X - 0 0 49 -3,-1.1 3,-0.7 19,-0.1 -1,-0.2 -0.671 53.0-167.0-171.3 115.0 14.6 23.3 -12.4 31 361 A E T 3 S+ 0 0 130 1,-0.2 -17,-0.2 -3,-0.2 -16,-0.1 0.575 88.5 65.5 -75.2 -11.0 14.4 22.5 -8.6 32 362 A D T 3 S+ 0 0 132 18,-0.1 2,-1.1 1,-0.1 -1,-0.2 0.545 76.0 88.8 -98.5 -8.0 10.9 24.1 -8.3 33 363 A A S < S- 0 0 18 -3,-0.7 -6,-0.3 -6,-0.2 -3,-0.1 -0.801 75.0-151.7 -82.6 98.2 9.1 21.5 -10.5 34 364 A K - 0 0 162 -2,-1.1 2,-0.6 1,-0.1 -7,-0.1 -0.201 26.0 -92.9 -60.3 163.4 8.2 18.9 -7.8 35 365 A V + 0 0 37 1,-0.2 19,-0.2 -11,-0.1 -1,-0.1 -0.748 57.7 150.1 -86.6 118.7 7.8 15.2 -8.8 36 366 A I + 0 0 102 17,-1.9 2,-0.4 -2,-0.6 -1,-0.2 0.565 56.7 74.0-115.0 -23.8 4.1 14.4 -9.7 37 367 A D - 0 0 29 16,-2.3 2,-1.4 2,-0.1 -1,-0.1 -0.814 68.5-149.5-106.2 128.6 4.8 11.6 -12.3 38 368 A L + 0 0 93 -2,-0.4 2,-0.3 16,-0.1 16,-0.1 -0.590 60.9 106.3 -99.5 65.9 6.0 8.2 -11.0 39 369 A M S S- 0 0 94 -2,-1.4 16,-2.7 17,-0.0 2,-0.7 -0.986 74.0-113.2-151.2 138.5 8.1 7.3 -14.1 40 370 A W B -c 55 0C 112 -2,-0.3 16,-0.2 14,-0.2 -2,-0.1 -0.626 41.5-136.5 -77.0 111.3 11.8 7.1 -15.0 41 371 A C - 0 0 28 14,-2.1 -1,-0.1 -2,-0.7 6,-0.0 -0.162 7.6-122.2 -70.6 164.8 12.5 9.9 -17.6 42 372 A D S S+ 0 0 168 1,-0.2 -1,-0.1 2,-0.1 -2,-0.0 0.785 105.4 37.6 -87.4 -31.5 14.6 9.6 -20.8 43 373 A K S > S+ 0 0 84 1,-0.2 3,-2.5 2,-0.0 -1,-0.2 0.518 83.4 178.7 -92.8 -9.5 17.4 12.3 -20.5 44 374 A N G > S+ 0 0 56 1,-0.3 3,-1.6 2,-0.2 -1,-0.2 -0.166 72.0 8.5 41.0-112.3 17.7 11.6 -16.7 45 375 A L G 3 S+ 0 0 22 1,-0.3 -1,-0.3 -18,-0.1 11,-0.0 0.447 136.0 51.3 -75.6 -0.8 20.5 13.9 -15.3 46 376 A T G < S+ 0 0 111 -3,-2.5 2,-0.6 -18,-0.0 -1,-0.3 0.201 71.4 136.0-115.1 9.2 20.7 15.8 -18.7 47 377 A C < - 0 0 3 -3,-1.6 -18,-0.9 1,-0.2 5,-0.1 -0.485 34.0-170.6 -64.7 109.5 17.0 16.5 -19.0 48 378 A D + 0 0 111 -2,-0.6 -1,-0.2 -20,-0.1 -3,-0.0 0.475 48.4 111.1 -84.7 -6.6 17.1 20.2 -20.2 49 379 A N > - 0 0 63 1,-0.1 3,-0.8 2,-0.0 -20,-0.3 -0.628 51.3-162.7 -73.2 118.7 13.3 20.8 -19.8 50 380 A P T 3 S+ 0 0 73 0, 0.0 -1,-0.1 0, 0.0 -18,-0.1 0.499 89.1 55.0 -78.3 -3.4 12.6 23.3 -16.8 51 381 A E T 3 S+ 0 0 162 -19,-0.0 2,-0.2 -18,-0.0 -2,-0.0 0.312 78.8 117.7-114.1 3.0 8.9 22.1 -16.7 52 382 A C < - 0 0 16 -3,-0.8 -25,-0.6 1,-0.1 -19,-0.1 -0.489 37.1-177.2 -72.7 149.4 9.5 18.3 -16.3 53 383 A R + 0 0 110 -2,-0.2 -16,-2.3 -27,-0.1 -17,-1.9 -0.211 41.8 112.2-143.9 32.0 8.1 16.6 -13.2 54 384 A K S S- 0 0 61 -19,-0.2 2,-0.4 -18,-0.2 -14,-0.2 -0.342 72.4 -72.2-106.8-175.9 9.3 13.0 -13.5 55 385 A A B +c 40 0C 1 -16,-2.7 -14,-2.1 -2,-0.1 2,-0.3 -0.725 54.0 158.3 -92.4 128.7 11.8 10.6 -11.7 56 386 A H B -B 25 0B 1 -31,-1.7 -31,-2.2 -2,-0.4 3,-0.1 -0.887 43.0 -93.7-135.2 164.8 15.6 11.1 -12.2 57 387 A S S S- 0 0 39 -2,-0.3 2,-0.2 -33,-0.2 -1,-0.1 -0.039 73.9 -47.6 -68.9-178.4 18.8 10.2 -10.3 58 388 A S > - 0 0 0 -37,-0.8 3,-1.7 -39,-0.2 4,-0.2 -0.361 36.6-145.0 -67.8 133.1 20.3 12.8 -7.8 59 389 A L T >> S+ 0 0 13 -46,-0.3 3,-1.9 1,-0.3 4,-1.5 0.735 92.9 82.6 -58.9 -21.8 20.8 16.4 -8.8 60 390 A S H 3> S+ 0 0 5 -44,-0.3 4,-2.0 1,-0.3 -1,-0.3 0.770 76.6 71.6 -60.5 -17.3 23.9 16.4 -6.6 61 391 A K H <4 S+ 0 0 121 -3,-1.7 -1,-0.3 -42,-0.3 4,-0.2 0.801 115.1 21.9 -66.4 -29.6 25.7 14.8 -9.7 62 392 A I H <4 S+ 0 0 99 -3,-1.9 -2,-0.2 -4,-0.2 -1,-0.2 0.469 133.5 44.2-108.8 -9.7 25.5 18.2 -11.5 63 393 A K H < S- 0 0 138 -4,-1.5 -3,-0.2 1,-0.1 -2,-0.2 0.839 131.5 -12.7-104.2 -45.8 25.2 20.3 -8.3 64 394 A E < - 0 0 76 -4,-2.0 2,-0.2 -5,-0.2 -2,-0.1 -0.569 51.7-168.2-170.9 86.9 27.7 19.1 -5.7 65 395 A V S S+ 0 0 102 -4,-0.2 -4,-0.1 -2,-0.1 -47,-0.0 0.134 70.6 84.4 -75.7 20.9 29.4 15.7 -6.3 66 396 A K S S- 0 0 111 -2,-0.2 2,-0.1 -6,-0.1 5,-0.1 -0.965 70.1-150.7-129.6 107.4 30.7 15.7 -2.7 67 397 A P - 0 0 38 0, 0.0 2,-0.3 0, 0.0 -49,-0.1 -0.386 13.6-177.4 -80.6 161.0 28.4 14.3 0.1 68 398 A I + 0 0 110 -2,-0.1 2,-1.7 -51,-0.1 -51,-0.1 -0.965 69.2 15.3-157.8 142.8 28.3 15.4 3.8 69 399 A S S S+ 0 0 125 2,-2.4 0, 0.0 -2,-0.3 0, 0.0 -0.241 125.2 59.7 73.9 -39.1 26.2 14.2 6.8 70 400 A Q 0 0 136 -2,-1.7 -1,-0.2 1,-0.2 -52,-0.0 0.443 360.0 360.0 -72.7 -4.6 25.5 11.2 4.5 71 401 A K 0 0 209 -5,-0.1 -2,-2.4 -53,-0.0 -1,-0.2 -0.965 360.0 360.0-149.6 360.0 29.4 11.2 4.9