==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=21-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSCRIPTION/DNA 18-MAY-05 1ZQ3 . COMPND 2 MOLECULE: HOMEOTIC BICOID PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; . AUTHOR J.M.BAIRD-TITUS,M.RANCE,K.CLARK-BALDWIN,J.MA,D.VRUSHANK . 68 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5602.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 45 66.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 7 10.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 37 54.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 P G 0 0 109 0, 0.0 3,-0.5 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 93.9 7.0 -5.7 3.6 2 2 P P - 0 0 148 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.808 360.0 -3.6 -64.1 -24.6 6.8 -7.6 7.0 3 3 P R S S- 0 0 170 0, 0.0 3,-0.4 0, 0.0 0, 0.0 -0.370 78.9-175.6-164.5 70.1 3.1 -8.7 6.5 4 4 P R + 0 0 175 -3,-0.5 0, 0.0 1,-0.2 0, 0.0 -0.055 63.5 37.3 -59.8 167.6 1.4 -7.4 3.3 5 5 P T + 0 0 71 1,-0.2 -1,-0.2 0, 0.0 0, 0.0 0.747 57.8 162.1 42.9 49.4 -2.3 -8.0 2.5 6 6 P R S S+ 0 0 153 -3,-0.4 2,-0.3 2,-0.0 -1,-0.2 0.168 71.7 37.9 -63.8 9.7 -3.5 -7.6 6.1 7 7 P T - 0 0 35 34,-0.1 2,-0.3 38,-0.0 34,-0.0 -0.962 66.9-155.0-162.6 155.0 -6.8 -7.1 4.3 8 8 P T - 0 0 120 -2,-0.3 2,-0.0 2,-0.0 -2,-0.0 -0.910 22.1-139.1-143.2 118.7 -8.7 -8.4 1.3 9 9 P F - 0 0 73 -2,-0.3 2,-0.3 3,-0.0 -2,-0.0 -0.141 15.2-172.0 -65.6 164.7 -11.4 -6.3 -0.5 10 10 P T >> - 0 0 75 -2,-0.0 4,-2.2 0, 0.0 3,-0.5 -0.881 49.2 -85.3-142.7 172.8 -14.7 -7.2 -1.9 11 11 P S H 3> S+ 0 0 105 -2,-0.3 4,-2.0 2,-0.2 5,-0.1 0.779 126.8 61.0 -48.2 -30.0 -17.4 -5.4 -4.0 12 12 P S H 3> S+ 0 0 77 2,-0.2 4,-2.2 1,-0.2 -1,-0.2 0.881 106.4 44.5 -70.4 -41.9 -18.7 -3.9 -0.6 13 13 P Q H <> S+ 0 0 33 -3,-0.5 4,-3.2 2,-0.2 -2,-0.2 0.938 114.4 48.2 -67.2 -43.3 -15.4 -2.2 0.1 14 14 P I H X S+ 0 0 70 -4,-2.2 4,-2.1 2,-0.2 5,-0.3 0.856 109.9 55.0 -62.0 -31.5 -15.2 -0.9 -3.5 15 15 P A H X S+ 0 0 50 -4,-2.0 4,-1.7 -5,-0.2 -2,-0.2 0.942 115.8 36.4 -68.1 -42.3 -18.8 0.2 -3.0 16 16 P E H X S+ 0 0 58 -4,-2.2 4,-2.7 2,-0.2 5,-0.4 0.961 115.4 54.0 -64.7 -52.8 -17.9 2.3 0.1 17 17 P L H X S+ 0 0 0 -4,-3.2 4,-2.0 1,-0.2 -2,-0.2 0.861 113.9 41.0 -52.5 -54.2 -14.6 3.4 -1.1 18 18 P E H X S+ 0 0 74 -4,-2.1 4,-1.8 -5,-0.2 -1,-0.2 0.887 115.4 50.3 -61.8 -43.9 -16.0 4.8 -4.4 19 19 P Q H < S+ 0 0 118 -4,-1.7 4,-0.4 -5,-0.3 -2,-0.2 0.820 116.6 40.0 -73.9 -37.1 -19.2 6.4 -2.8 20 20 P H H >X S+ 0 0 52 -4,-2.7 3,-1.1 2,-0.2 4,-0.9 0.884 110.3 61.3 -80.5 -24.4 -17.3 8.3 -0.0 21 21 P F H >< S+ 0 0 26 -4,-2.0 3,-1.0 -5,-0.4 -2,-0.2 0.871 92.3 65.4 -52.8 -41.3 -14.5 9.1 -2.5 22 22 P L T 3< S+ 0 0 82 -4,-1.8 3,-0.3 1,-0.3 -1,-0.3 0.817 100.8 50.6 -56.8 -37.2 -17.1 11.1 -4.6 23 23 P Q T <4 S+ 0 0 136 -3,-1.1 -1,-0.3 -4,-0.4 -2,-0.2 0.753 131.3 13.6 -74.5 -23.2 -17.4 13.5 -1.6 24 24 P G << - 0 0 11 -3,-1.0 -1,-0.3 -4,-0.9 -2,-0.1 -0.722 65.7-170.6-153.5 94.9 -13.5 14.0 -1.4 25 25 P R S S+ 0 0 135 -3,-0.3 2,-0.3 -2,-0.2 -3,-0.1 0.399 76.4 52.6 -67.9 -3.0 -11.5 12.6 -4.5 26 26 P Y S S- 0 0 173 -5,-0.1 2,-0.3 2,-0.0 5,-0.1 -0.976 90.3-113.1-129.7 142.5 -8.1 13.2 -2.6 27 27 P L + 0 0 40 -2,-0.3 2,-0.3 4,-0.1 -2,-0.1 -0.558 35.8 159.1 -85.5 149.2 -7.2 11.9 0.9 28 28 P T > - 0 0 72 -2,-0.3 4,-2.7 -4,-0.1 3,-0.4 -0.917 59.6 -87.0-141.9 168.9 -6.6 13.6 4.2 29 29 P A H > S+ 0 0 70 -2,-0.3 4,-3.3 1,-0.2 5,-0.2 0.875 128.5 48.2 -46.1 -53.5 -6.7 12.3 7.7 30 30 P P H > S+ 0 0 90 0, 0.0 4,-2.0 0, 0.0 -1,-0.2 0.798 113.7 46.2 -60.9 -38.6 -10.5 13.1 8.0 31 31 P R H > S+ 0 0 117 -3,-0.4 4,-2.2 2,-0.2 5,-0.2 0.949 116.5 45.4 -65.7 -49.2 -11.4 11.4 4.6 32 32 P L H X S+ 0 0 17 -4,-2.7 4,-1.9 2,-0.2 -3,-0.2 0.882 114.3 48.7 -59.6 -46.0 -9.2 8.4 5.6 33 33 P A H X S+ 0 0 54 -4,-3.3 4,-1.6 -5,-0.3 -2,-0.2 0.945 112.3 48.6 -65.7 -48.5 -10.8 8.2 9.3 34 34 P D H X S+ 0 0 77 -4,-2.0 4,-1.5 1,-0.2 -2,-0.2 0.920 114.4 43.8 -55.5 -45.9 -14.4 8.4 8.0 35 35 P L H X S+ 0 0 2 -4,-2.2 4,-3.0 1,-0.2 5,-0.5 0.853 109.3 58.8 -68.2 -35.7 -13.8 5.7 5.3 36 36 P S H X>S+ 0 0 31 -4,-1.9 5,-0.8 1,-0.2 4,-0.6 0.850 108.9 44.4 -62.1 -43.1 -11.9 3.5 7.9 37 37 P A H <5S+ 0 0 80 -4,-1.6 -1,-0.2 3,-0.2 -2,-0.2 0.889 119.3 42.3 -66.1 -41.6 -15.0 3.5 10.2 38 38 P K H <5S+ 0 0 87 -4,-1.5 -2,-0.2 1,-0.2 -3,-0.2 0.890 119.8 38.4 -79.6 -44.6 -17.5 2.8 7.3 39 39 P L H <5S- 0 0 7 -4,-3.0 -1,-0.2 2,-0.2 -3,-0.2 0.767 104.2-129.6 -68.2 -26.1 -15.6 0.2 5.3 40 40 P A T <5 + 0 0 84 -4,-0.6 2,-0.3 -5,-0.5 -3,-0.2 0.878 68.9 120.1 62.9 44.5 -14.5 -1.3 8.6 41 41 P L S > - 0 0 34 -2,-0.3 4,-1.1 1,-0.1 3,-0.9 -0.183 36.2-112.8 -53.6 156.1 -7.6 0.5 8.6 43 43 P T H 3> S+ 0 0 59 1,-0.3 4,-1.3 2,-0.2 -1,-0.1 0.766 114.2 62.5 -66.6 -23.1 -6.7 4.1 7.5 44 44 P A H 3> S+ 0 0 38 1,-0.2 4,-2.0 2,-0.2 -1,-0.3 0.848 97.3 54.3 -71.7 -38.9 -3.7 2.7 5.6 45 45 P Q H <> S+ 0 0 21 -3,-0.9 4,-2.0 2,-0.2 -1,-0.2 0.899 102.2 59.6 -60.6 -34.0 -5.7 0.7 3.2 46 46 P V H >X S+ 0 0 0 -4,-1.1 4,-2.2 1,-0.2 3,-0.7 0.945 108.4 43.7 -64.6 -49.7 -7.8 3.8 2.3 47 47 P K H 3X S+ 0 0 102 -4,-1.3 4,-2.3 1,-0.3 -1,-0.2 0.889 112.6 53.1 -46.5 -53.9 -4.7 5.6 1.0 48 48 P I H 3X S+ 0 0 73 -4,-2.0 4,-2.0 1,-0.2 -1,-0.3 0.770 110.2 48.6 -65.7 -32.7 -3.5 2.5 -0.7 49 49 P W H < S+ 0 0 79 -4,-1.9 3,-1.9 1,-0.2 -2,-0.2 0.886 107.6 55.3 -81.0 -37.2 -6.2 5.7 -20.5 62 62 P D H >< S+ 0 0 103 -4,-2.1 3,-1.8 1,-0.3 -2,-0.2 0.906 100.8 58.8 -64.7 -38.9 -2.5 5.6 -21.5 63 63 P Q T 3< S+ 0 0 140 -4,-1.8 -1,-0.3 1,-0.3 -2,-0.2 0.397 109.5 48.3 -58.4 -2.6 -3.3 2.3 -23.4 64 64 P H T < S+ 0 0 156 -3,-1.9 -1,-0.3 -5,-0.1 -2,-0.2 -0.158 81.5 153.5-132.9 31.2 -5.8 4.5 -25.3 65 65 P K < - 0 0 174 -3,-1.8 2,-0.2 1,-0.0 -3,-0.1 -0.279 19.8-171.8 -56.4 145.7 -3.6 7.5 -26.2 66 66 P D - 0 0 121 2,-0.0 2,-0.3 -2,-0.0 -2,-0.0 -0.731 6.7-155.9-123.6-176.5 -4.4 9.6 -29.2 67 67 P Q 0 0 153 -2,-0.2 0, 0.0 0, 0.0 0, 0.0 -0.939 360.0 360.0-157.2 165.6 -2.8 12.4 -31.2 68 68 P S 0 0 172 -2,-0.3 -2,-0.0 0, 0.0 0, 0.0 -0.970 360.0 360.0-144.3 360.0 -3.7 15.3 -33.6