==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=21-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA BINDING PROTEIN 14-JUN-05 1ZZK . COMPND 2 MOLECULE: HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN K; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR P.H.BACKE,A.C.MESSIAS,R.B.RAVELLI,M.SATTLER,S.CUSACK . 80 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5089.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 54 67.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 14 17.5 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 2 2.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 7 8.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 27 33.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 10 A M 0 0 180 0, 0.0 57,-0.6 0, 0.0 58,-0.3 0.000 360.0 360.0 360.0 -16.5 8.4 -2.8 -13.6 2 11 A G - 0 0 41 55,-0.1 3,-0.1 56,-0.1 55,-0.0 -0.053 360.0 -44.8 81.3 172.4 5.6 -0.3 -13.4 3 12 A P - 0 0 101 0, 0.0 55,-0.4 0, 0.0 2,-0.4 -0.074 61.0 -90.0 -77.8 166.4 5.3 3.1 -11.9 4 13 A I + 0 0 125 53,-0.1 2,-0.3 51,-0.1 53,-0.2 -0.646 55.3 169.5 -71.3 128.4 6.4 4.5 -8.6 5 14 A I E -A 56 0A 67 51,-2.8 51,-2.2 -2,-0.4 2,-0.4 -0.823 26.3-123.1-135.6 171.8 3.6 4.0 -6.0 6 15 A T E +A 55 0A 84 -2,-0.3 2,-0.3 49,-0.2 49,-0.2 -0.969 22.7 175.1-122.9 142.8 3.2 4.4 -2.2 7 16 A T E -A 54 0A 41 47,-2.5 47,-3.2 -2,-0.4 2,-0.4 -0.980 15.9-146.6-137.9 152.4 2.0 2.0 0.4 8 17 A Q E -A 53 0A 116 -2,-0.3 2,-0.3 45,-0.2 45,-0.2 -0.913 11.1-172.9-115.3 148.5 1.8 2.2 4.2 9 18 A V E -A 52 0A 22 43,-2.3 43,-3.0 -2,-0.4 2,-0.4 -0.930 17.9-132.3-130.5 158.0 2.3 -0.4 6.8 10 19 A T E -A 51 0A 72 -2,-0.3 41,-0.2 41,-0.2 39,-0.0 -0.925 17.2-173.4-116.2 138.8 1.8 -0.2 10.6 11 20 A I E -A 50 0A 0 39,-2.3 39,-3.1 -2,-0.4 5,-0.2 -0.995 36.9-102.3-127.7 130.8 4.1 -1.4 13.3 12 21 A P E >> -A 49 0A 30 0, 0.0 3,-1.9 0, 0.0 4,-1.3 -0.243 33.0-122.3 -51.2 140.6 3.3 -1.4 17.0 13 22 A K T 34 S+ 0 0 67 35,-2.6 4,-0.4 1,-0.3 3,-0.1 0.803 110.6 55.1 -58.5 -34.9 4.9 1.5 18.7 14 23 A D T 34 S+ 0 0 136 34,-0.3 -1,-0.3 1,-0.2 35,-0.1 0.591 115.4 39.6 -76.7 -9.1 6.8 -0.6 21.2 15 24 A L T X4 S+ 0 0 19 -3,-1.9 3,-2.3 2,-0.1 4,-0.2 0.533 88.5 90.6-105.6 -16.8 8.4 -2.6 18.3 16 25 A A G >< S+ 0 0 0 -4,-1.3 3,-2.0 1,-0.3 4,-0.3 0.789 72.8 71.1 -61.5 -28.3 9.0 0.2 15.8 17 26 A G G >> S+ 0 0 50 -4,-0.4 3,-1.3 1,-0.3 4,-1.1 0.747 81.5 77.0 -53.3 -25.1 12.5 0.8 17.2 18 27 A S G <4 S+ 0 0 11 -3,-2.3 -1,-0.3 1,-0.3 -2,-0.2 0.770 97.3 44.0 -56.1 -28.2 13.5 -2.5 15.6 19 28 A I G <4 S+ 0 0 1 -3,-2.0 -1,-0.3 -4,-0.2 11,-0.2 0.482 111.5 52.5 -99.5 -3.9 13.6 -0.8 12.2 20 29 A I T <4 S- 0 0 49 -3,-1.3 7,-1.6 -4,-0.3 6,-1.4 0.944 74.5-178.2 -97.9 -66.2 15.4 2.4 13.2 21 30 A G >< - 0 0 17 -4,-1.1 3,-2.4 4,-0.2 6,-0.1 0.054 48.1 -37.8 86.8 164.4 18.7 1.6 15.0 22 31 A K G > S+ 0 0 179 1,-0.3 3,-2.0 2,-0.2 4,-0.1 -0.439 137.0 2.8 -61.0 132.3 21.3 3.9 16.5 23 32 A G G 3 S- 0 0 59 1,-0.3 -1,-0.3 2,-0.1 -2,-0.1 0.617 125.5 -76.7 65.7 14.2 21.6 6.9 14.2 24 33 A G G <> S+ 0 0 9 -3,-2.4 4,-2.3 1,-0.1 -1,-0.3 0.764 90.1 147.9 68.2 22.9 18.8 5.4 12.0 25 34 A Q H <> + 0 0 97 -3,-2.0 4,-2.0 1,-0.2 -4,-0.2 0.846 65.9 50.0 -63.1 -36.2 21.4 3.0 10.7 26 35 A R H > S+ 0 0 55 -6,-1.4 4,-2.4 2,-0.2 -1,-0.2 0.949 112.5 43.9 -68.2 -50.4 18.9 0.2 10.2 27 36 A I H > S+ 0 0 10 -7,-1.6 4,-2.5 1,-0.2 5,-0.2 0.892 113.0 53.9 -64.1 -37.3 16.3 2.2 8.3 28 37 A K H X S+ 0 0 116 -4,-2.3 4,-2.0 -8,-0.4 -1,-0.2 0.923 111.0 46.0 -58.4 -43.6 19.1 3.7 6.2 29 38 A Q H X S+ 0 0 116 -4,-2.0 4,-2.6 -5,-0.2 -2,-0.2 0.873 109.8 53.4 -67.9 -37.8 20.2 0.2 5.4 30 39 A I H X S+ 0 0 7 -4,-2.4 4,-2.2 2,-0.2 6,-0.3 0.905 109.7 48.6 -65.6 -42.3 16.7 -1.0 4.6 31 40 A R H X S+ 0 0 86 -4,-2.5 4,-2.6 1,-0.2 5,-0.3 0.931 113.0 48.7 -57.2 -49.2 16.2 1.9 2.2 32 41 A H H < S+ 0 0 156 -4,-2.0 -2,-0.2 -5,-0.2 -1,-0.2 0.930 113.7 45.0 -59.0 -45.5 19.5 1.1 0.5 33 42 A E H < S+ 0 0 143 -4,-2.6 -1,-0.2 1,-0.2 -2,-0.2 0.892 122.3 35.7 -68.6 -39.0 18.8 -2.7 0.2 34 43 A S H < S- 0 0 10 -4,-2.2 -1,-0.2 -5,-0.2 -2,-0.2 0.770 95.6-133.8 -83.1 -28.5 15.3 -2.3 -1.1 35 44 A G < + 0 0 44 -4,-2.6 2,-0.2 1,-0.3 -3,-0.1 0.439 65.0 124.6 82.1 -0.4 15.8 0.9 -3.2 36 45 A A - 0 0 4 -6,-0.3 2,-0.4 24,-0.3 -1,-0.3 -0.614 67.1-118.2 -92.2 152.4 12.6 2.3 -1.7 37 46 A S E -B 55 0A 81 18,-2.6 18,-2.7 -2,-0.2 2,-0.4 -0.714 34.4-169.4 -79.7 136.0 12.1 5.6 0.1 38 47 A I E +B 54 0A 6 -2,-0.4 2,-0.4 16,-0.2 16,-0.2 -0.981 8.3 179.4-140.3 114.4 10.9 4.8 3.6 39 48 A K E -B 53 0A 132 14,-2.5 14,-3.0 -2,-0.4 2,-0.3 -0.980 13.4-151.6-115.9 127.9 9.5 7.5 6.0 40 49 A I E -B 52 0A 40 -2,-0.4 12,-0.2 12,-0.2 -2,-0.0 -0.728 23.1-115.6 -98.0 150.4 8.2 6.9 9.6 41 50 A D - 0 0 28 10,-1.9 -1,-0.1 -2,-0.3 9,-0.0 -0.243 43.2 -75.9 -72.1 171.3 5.6 9.0 11.1 42 51 A E > - 0 0 127 1,-0.1 3,-1.4 2,-0.1 9,-0.2 -0.384 47.0-116.4 -70.3 152.8 6.1 11.2 14.2 43 52 A P T 3 S+ 0 0 65 0, 0.0 -1,-0.1 0, 0.0 -2,-0.1 0.656 106.6 46.2 -70.6 -22.3 6.1 9.2 17.4 44 53 A L T 3 + 0 0 153 1,-0.2 3,-0.1 6,-0.0 -2,-0.1 0.203 68.2 118.3-104.9 14.8 3.0 10.6 19.2 45 54 A E S < S- 0 0 122 -3,-1.4 -1,-0.2 1,-0.2 4,-0.1 0.288 73.1-142.7 -71.6 26.4 0.7 10.4 16.2 46 55 A G + 0 0 26 2,-0.1 -1,-0.2 -3,-0.0 -33,-0.1 -0.191 59.8 110.1 73.1-144.5 -1.1 8.1 18.5 47 56 A S S S- 0 0 86 1,-0.2 -34,-0.0 -3,-0.1 0, 0.0 0.223 89.8 -85.1 34.2 178.1 -2.9 4.9 17.8 48 57 A E S S+ 0 0 173 -36,-0.1 -35,-2.6 -35,-0.0 -34,-0.3 0.475 110.7 66.4 -77.4 -5.9 -1.1 1.9 19.2 49 58 A D E S-A 12 0A 50 -37,-0.3 2,-0.4 -4,-0.1 -39,-0.0 -0.857 72.7-133.6-123.3 153.5 0.9 1.8 15.9 50 59 A R E -A 11 0A 45 -39,-3.1 -39,-2.3 -2,-0.3 2,-0.5 -0.803 27.5-132.2 -95.6 142.2 3.4 3.8 14.0 51 60 A I E -A 10 0A 59 -2,-0.4 -10,-1.9 -41,-0.2 2,-0.5 -0.867 17.3-163.5-100.5 125.8 2.8 4.3 10.2 52 61 A I E -AB 9 40A 0 -43,-3.0 -43,-2.3 -2,-0.5 2,-0.5 -0.943 6.5-152.8-109.2 127.5 5.6 3.6 7.8 53 62 A T E -AB 8 39A 16 -14,-3.0 -14,-2.5 -2,-0.5 2,-0.5 -0.911 10.0-169.0-108.5 124.4 5.3 5.0 4.3 54 63 A I E -AB 7 38A 0 -47,-3.2 -47,-2.5 -2,-0.5 2,-0.4 -0.948 3.6-174.9-118.7 125.8 7.2 3.1 1.5 55 64 A T E +AB 6 37A 40 -18,-2.7 -18,-2.6 -2,-0.5 2,-0.3 -0.983 36.2 77.7-129.0 125.4 7.5 4.6 -2.0 56 65 A G E S-A 5 0A 5 -51,-2.2 -51,-2.8 -2,-0.4 -20,-0.1 -0.960 84.1 -34.2 171.8-165.6 9.1 2.9 -5.0 57 66 A T > - 0 0 14 -2,-0.3 4,-2.6 -53,-0.2 5,-0.2 -0.377 66.2-103.5 -68.7 164.3 8.2 0.3 -7.6 58 67 A Q H > S+ 0 0 88 -57,-0.6 4,-2.3 -55,-0.4 5,-0.2 0.881 124.0 51.3 -57.5 -38.5 5.9 -2.5 -6.4 59 68 A D H > S+ 0 0 89 -58,-0.3 4,-2.5 2,-0.2 -1,-0.2 0.928 109.4 48.7 -66.1 -42.0 8.9 -4.8 -6.3 60 69 A Q H > S+ 0 0 58 1,-0.2 4,-2.5 2,-0.2 -24,-0.3 0.900 111.2 51.2 -61.6 -41.9 11.0 -2.4 -4.2 61 70 A I H X S+ 0 0 0 -4,-2.6 4,-2.8 2,-0.2 -2,-0.2 0.928 109.8 49.0 -61.3 -45.4 8.0 -2.0 -1.8 62 71 A Q H X S+ 0 0 76 -4,-2.3 4,-2.3 -5,-0.2 5,-0.2 0.944 111.8 49.0 -61.1 -45.3 7.7 -5.7 -1.4 63 72 A N H X S+ 0 0 90 -4,-2.5 4,-2.1 1,-0.2 -1,-0.2 0.906 111.9 49.1 -62.1 -40.8 11.4 -6.1 -0.7 64 73 A A H X S+ 0 0 0 -4,-2.5 4,-2.6 2,-0.2 -1,-0.2 0.915 108.6 53.8 -62.5 -44.3 11.2 -3.2 1.9 65 74 A Q H X S+ 0 0 46 -4,-2.8 4,-2.5 1,-0.2 -2,-0.2 0.906 110.0 46.3 -58.0 -43.9 8.2 -4.9 3.6 66 75 A Y H X S+ 0 0 128 -4,-2.3 4,-2.9 1,-0.2 5,-0.2 0.903 111.7 51.4 -68.7 -37.2 10.0 -8.2 4.0 67 76 A L H X S+ 0 0 53 -4,-2.1 4,-2.1 -5,-0.2 -2,-0.2 0.909 111.0 48.8 -63.2 -41.6 13.1 -6.4 5.3 68 77 A L H X S+ 0 0 0 -4,-2.6 4,-2.5 2,-0.2 -2,-0.2 0.936 113.8 46.2 -61.1 -48.5 10.9 -4.5 7.9 69 78 A Q H X S+ 0 0 39 -4,-2.5 4,-2.6 1,-0.2 -2,-0.2 0.923 113.0 48.5 -59.1 -48.4 9.2 -7.7 9.0 70 79 A N H X S+ 0 0 92 -4,-2.9 4,-2.4 1,-0.2 -1,-0.2 0.872 110.9 52.1 -65.2 -33.1 12.4 -9.7 9.3 71 80 A S H X S+ 0 0 20 -4,-2.1 4,-2.1 -5,-0.2 5,-0.3 0.918 109.3 48.3 -66.9 -45.7 14.0 -6.8 11.3 72 81 A V H X S+ 0 0 0 -4,-2.5 4,-2.3 1,-0.2 6,-0.5 0.921 113.1 48.9 -59.7 -42.2 11.1 -6.7 13.7 73 82 A K H X S+ 0 0 91 -4,-2.6 4,-2.2 1,-0.2 -2,-0.2 0.920 109.8 52.2 -64.2 -41.4 11.3 -10.5 14.1 74 83 A Q H < S+ 0 0 140 -4,-2.4 -1,-0.2 1,-0.2 -2,-0.2 0.891 120.7 32.0 -56.8 -43.5 15.2 -10.3 14.7 75 84 A Y H < S+ 0 0 110 -4,-2.1 -1,-0.2 3,-0.1 -2,-0.2 0.721 133.7 25.8 -95.5 -21.8 14.9 -7.7 17.4 76 85 A S H < S- 0 0 45 -4,-2.3 -3,-0.2 -5,-0.3 -2,-0.2 0.610 94.8-119.2-116.1 -18.5 11.5 -8.7 19.0 77 86 A G S < S+ 0 0 48 -4,-2.2 2,-0.3 -5,-0.4 -4,-0.2 0.349 84.5 71.1 87.9 -1.6 10.9 -12.4 18.3 78 87 A K S S- 0 0 102 -6,-0.5 -2,-0.2 -9,-0.1 -1,-0.2 -0.943 74.6-119.6-140.8 160.3 7.7 -11.8 16.4 79 88 A F 0 0 106 -2,-0.3 -10,-0.1 -6,-0.1 -9,-0.1 -0.451 360.0 360.0 -81.9 167.5 6.4 -10.5 13.1 80 89 A F 0 0 80 -2,-0.1 -1,-0.1 -65,-0.0 -70,-0.1 0.576 360.0 360.0-114.0 360.0 4.0 -7.6 13.0