data_bmse000897 save_entry_information _Entry.Sf_category entry_information _Entry.Sf_framecode entry_information _Entry.ID bmse000897 _Entry.Title D_ornithine _Entry.Version_type update _Entry.Submission_date 2012-02-23 _Entry.Accession_date 2012-02-23 _Entry.Last_release_date 2012-10-17 _Entry.Original_release_date 2012-02-23 _Entry.Origination author _Entry.NMR_STAR_version 3.1.1.21 _Entry.Original_NMR_STAR_version 3.1.1.21 _Entry.Experimental_method NMR _Entry.Experimental_method_subtype solution _Entry.Details ? _Entry.BMRB_internal_directory_name D_ornithine loop_ _Entry_author.Ordinal _Entry_author.Given_name _Entry_author.Family_name _Entry_author.Middle_initials _Entry_author.Family_title _Entry_author.Entry_ID 1 Francisca Jofre ? ? bmse000897 2 Mark Anderson E. ? bmse000897 3 John Markley L. ? bmse000897 stop_ loop_ _Entry_src.ID _Entry_src.Project_name _Entry_src.Organization_full_name _Entry_src.Organization_initials _Entry_src.Entry_ID 1 metabolomics "National Magnetic Facility at Madison" NMRFAM bmse000897 2 metabolomics "Biological Magnetic Resonance Bank" BMRB bmse000897 stop_ loop_ _Data_set.Type _Data_set.Count _Data_set.Entry_ID assigned_chemical_shifts 1 bmse000897 stop_ loop_ _Datum.Type _Datum.Count _Datum.Entry_ID "13C chemical shifts" 5 bmse000897 "1H chemical shifts" 7 bmse000897 stop_ loop_ _Release.Release_number _Release.Date _Release.Submission_date _Release.Type _Release.Author _Release.Detail _Release.Entry_ID 1 2012-02-23 2012-02-23 original BMRB "Original spectra from BMRB" bmse000897 2 2012-03-09 2012-03-09 update BMRB "fixed data paths for 1H_13C_HSQC_SW_small" bmse000897 3 2012-09-13 2012-09-13 update BMRB "Added PubChem SID 144080899 to database loop" bmse000897 4 2012-10-12 2012-10-12 update BMRB "Set assigned_chemical_shifts with data from bmse000019" bmse000897 5 2012-10-17 2012-10-17 update BMRB "Set all _Chem_comp_SMILES Types to lower case" bmse000897 stop_ save_ save_citation_1 _Citation.Sf_category citations _Citation.Sf_framecode citation_1 _Citation.Entry_ID bmse000897 _Citation.ID 1 _Citation.Class 'reference citation' _Citation.PubMed_ID 17170002 _Citation.Title 'Database resources of the National Center for Biotechnology Information.' _Citation.Status published _Citation.Type internet _Citation.WWW_URL http://pubchem.ncbi.nlm.nih.gov/ _Citation.Year 2006 _Citation.Details ? loop_ _Citation_author.Ordinal _Citation_author.Given_name _Citation_author.Family_name _Citation_author.First_initial _Citation_author.Middle_initials _Citation_author.Family_title _Citation_author.Entry_ID _Citation_author.Citation_ID 1 D. Wheeler D. L. ? bmse000897 1 2 T. Barrett T. ? ? bmse000897 1 3 D. Benson D. A. ? bmse000897 1 4 S. Bryant S. H. ? bmse000897 1 5 K. Canese K. ? ? bmse000897 1 6 V. Chetvenin V. ? ? bmse000897 1 7 D. Church D. M. ? bmse000897 1 8 M. DiCuccio M. ? ? bmse000897 1 9 R. Edgar R. ? ? bmse000897 1 10 S. Federhen S. ? ? bmse000897 1 11 L. Geer L. Y. ? bmse000897 1 12 W. Helmberg W. ? ? bmse000897 1 13 Y. Kapustin Y. ? ? bmse000897 1 14 D. Kenton D. L. ? bmse000897 1 15 O. Khovayko O. ? ? bmse000897 1 16 D. Lipman D. J. ? bmse000897 1 17 T. Madden T. L. ? bmse000897 1 18 D. Maglott D. R. ? bmse000897 1 19 J. Ostell J. ? ? bmse000897 1 20 K. Pruitt K. D. ? bmse000897 1 21 G. Schuler G. D. ? bmse000897 1 22 L. Schriml L. M. ? bmse000897 1 23 E. Sequeira E. ? ? bmse000897 1 24 S. Sherry S. T. ? bmse000897 1 25 K. Sirotkin K. ? ? bmse000897 1 26 A. Souvorov A. ? ? bmse000897 1 27 G. Starchenko G. ? ? bmse000897 1 28 T. Suzek T. O. ? bmse000897 1 29 R. Tatusov R. ? ? bmse000897 1 30 T. Tatusova T. A. ? bmse000897 1 31 L. Bagner L. ? ? bmse000897 1 32 E. Yaschenko E. ? ? bmse000897 1 stop_ save_ save_assembly _Assembly.Sf_category assembly _Assembly.Sf_framecode assembly _Assembly.Entry_ID bmse000897 _Assembly.ID 1 _Assembly.Name D-Ornithine _Assembly.Number_of_components 1 _Assembly.Organic_ligands 0 _Assembly.Metal_ions ? _Assembly.Non_standard_bonds no _Assembly.Paramagnetic no _Assembly.Thiol_state 'not reported' loop_ _Entity_assembly.ID _Entity_assembly.Entity_assembly_name _Entity_assembly.Entity_ID _Entity_assembly.Entity_label _Entity_assembly.Experimental_data_reported _Entity_assembly.Physical_state _Entity_assembly.Conformational_isomer _Entity_assembly.Chemical_exchange_state _Entity_assembly.Magnetic_equivalence_group_code _Entity_assembly.Role _Entity_assembly.Details _Entity_assembly.Entry_ID _Entity_assembly.Assembly_ID 1 D_ornithine 1 $D_ornithine yes native no no . . . bmse000897 1 stop_ save_ save_D_ornithine _Entity.Sf_category entity _Entity.Sf_framecode D_ornithine _Entity.Entry_ID bmse000897 _Entity.ID 1 _Entity.BMRB_code ? _Entity.Name D-ornithine _Entity.Type non-polymer _Entity.Ambiguous_conformational_states no _Entity.Ambiguous_chem_comp_sites no _Entity.Nstd_monomer no _Entity.Nstd_chirality no _Entity.Nstd_linkage no _Entity.Paramagnetic no _Entity.Thiol_state 'not reported' loop_ _Entity_comp_index.ID _Entity_comp_index.Comp_ID _Entity_comp_index.Comp_label _Entity_comp_index.Entry_ID _Entity_comp_index.Entity_ID 1 1 $chem_comp_1 bmse000897 1 stop_ save_ save_natural_source _Entity_natural_src_list.Sf_category natural_source _Entity_natural_src_list.Sf_framecode natural_source _Entity_natural_src_list.Entry_ID bmse000897 _Entity_natural_src_list.ID 1 loop_ _Entity_natural_src.ID _Entity_natural_src.Entity_ID _Entity_natural_src.Entity_label _Entity_natural_src.Entity_chimera_segment_ID _Entity_natural_src.NCBI_taxonomy_ID _Entity_natural_src.Type _Entity_natural_src.Common _Entity_natural_src.Organism_name_scientific _Entity_natural_src.Organism_name_common _Entity_natural_src.Organism_acronym _Entity_natural_src.ICTVdb_decimal_code _Entity_natural_src.Superkingdom _Entity_natural_src.Kingdom _Entity_natural_src.Genus _Entity_natural_src.Species _Entity_natural_src.Strain _Entity_natural_src.Variant _Entity_natural_src.Subvariant _Entity_natural_src.Organ _Entity_natural_src.Tissue _Entity_natural_src.Tissue_fraction _Entity_natural_src.Cell_line _Entity_natural_src.Cell_type _Entity_natural_src.ATCC_number _Entity_natural_src.Organelle _Entity_natural_src.Cellular_location _Entity_natural_src.Fragment _Entity_natural_src.Fraction _Entity_natural_src.Secretion _Entity_natural_src.Plasmid _Entity_natural_src.Plasmid_details _Entity_natural_src.Gene_mnemonic _Entity_natural_src.Dev_stage _Entity_natural_src.Details _Entity_natural_src.Citation_ID _Entity_natural_src.Citation_label _Entity_natural_src.Entry_ID _Entity_natural_src.Entity_natural_src_list_ID 1 1 $D_ornithine . n/a "multiple natural sources" yes "not applicable" n/a . . n/a n/a n/a n/a . . . . . . . . . . . . . . . . . . . . . bmse000897 1 stop_ save_ save_experimental_source _Entity_experimental_src_list.Sf_category experimental_source _Entity_experimental_src_list.Sf_framecode experimental_source _Entity_experimental_src_list.Entry_ID bmse000897 _Entity_experimental_src_list.ID 1 loop_ _Entity_experimental_src.ID _Entity_experimental_src.Entity_ID _Entity_experimental_src.Entity_label _Entity_experimental_src.Entity_chimera_segment_ID _Entity_experimental_src.Production_method _Entity_experimental_src.Host_org_scientific_name _Entity_experimental_src.Host_org_name_common _Entity_experimental_src.Host_org_details _Entity_experimental_src.Host_org_NCBI_taxonomy_ID _Entity_experimental_src.Host_org_genus _Entity_experimental_src.Host_org_species _Entity_experimental_src.Host_org_strain _Entity_experimental_src.Host_org_variant _Entity_experimental_src.Host_org_subvariant _Entity_experimental_src.Host_org_organ _Entity_experimental_src.Host_org_tissue _Entity_experimental_src.Host_org_tissue_fraction _Entity_experimental_src.Host_org_cell_line _Entity_experimental_src.Host_org_cell_type _Entity_experimental_src.Host_org_cellular_location _Entity_experimental_src.Host_org_organelle _Entity_experimental_src.Host_org_gene _Entity_experimental_src.Host_org_culture_collection _Entity_experimental_src.Host_org_ATCC_number _Entity_experimental_src.Vector_type _Entity_experimental_src.PDBview_host_org_vector_name _Entity_experimental_src.PDBview_plasmid_name _Entity_experimental_src.Vector_name _Entity_experimental_src.Vector_details _Entity_experimental_src.Vendor_name _Entity_experimental_src.Host_org_dev_stage _Entity_experimental_src.Details _Entity_experimental_src.Citation_ID _Entity_experimental_src.Citation_label _Entity_experimental_src.Entry_ID _Entity_experimental_src.Entity_experimental_src_list_ID 1 1 $D_ornithine . "chemical synthesis" . . . . . . . . . . . . . . . . . . . . . . . . . . . . . bmse000897 1 stop_ save_ save_chem_comp_1 _Chem_comp.Sf_category chem_comp _Chem_comp.Sf_framecode chem_comp_1 _Chem_comp.Entry_ID bmse000897 _Chem_comp.ID 1 _Chem_comp.Provenance PubChem _Chem_comp.Name D-Ornithine _Chem_comp.Type non-polymer _Chem_comp.BMRB_code ? _Chem_comp.PDB_code ? _Chem_comp.InCHi_code InChI=1S/C5H12N2O2/c6-3-1-2-4(7)5(8)9/h4H,1-3,6-7H2,(H,8,9)/t4-/m1/s1 _Chem_comp.Mon_nstd_flag ? _Chem_comp.Std_deriv_one_letter_code ? _Chem_comp.Std_deriv_three_letter_code ? _Chem_comp.Std_deriv_BMRB_code ? _Chem_comp.Std_deriv_PDB_code ? _Chem_comp.Formal_charge ? _Chem_comp.Paramagnetic no _Chem_comp.Aromatic no _Chem_comp.Formula 'C5 H12 N2 O2' _Chem_comp.Formula_weight 132.1609800000 _Chem_comp.Formula_mono_iso_wt_nat 132.08987764 _Chem_comp.Formula_mono_iso_wt_13C 137.106651829 _Chem_comp.Formula_mono_iso_wt_15N 134.083947426 _Chem_comp.Formula_mono_iso_wt_13C_15N 139.1007216152 _Chem_comp.Image_file_name standards/D_ornithine/lit/3798.png _Chem_comp.Image_file_format png _Chem_comp.Topo_file_name ? _Chem_comp.Topo_file_format ? _Chem_comp.Struct_file_name standards/D_ornithine/lit/3798.mol _Chem_comp.Struct_file_format mol _Chem_comp.Stereochem_param_file_name ? _Chem_comp.Details ? _Chem_comp.DB_query_date ? _Chem_comp.DB_last_query_revised_last_date ? loop_ _Chem_comp_common_name.Name _Chem_comp_common_name.Type _Chem_comp_common_name.Entry_ID _Chem_comp_common_name.Comp_ID D-Ornithine synonym bmse000897 1 stop_ loop_ _Chem_comp_systematic_name.Name _Chem_comp_systematic_name.Naming_system _Chem_comp_systematic_name.Entry_ID _Chem_comp_systematic_name.Comp_ID "(2R)-2,5-diaminopentanoic acid" IUPAC bmse000897 1 "(2R)-2,5-diaminopentanoic acid" IUPAC_TRADITIONAL bmse000897 1 "(2R)-2,5-diaminopentanoic acid" IUPAC_CAS bmse000897 1 "(2R)-2,5-diaminopentanoic acid" IUPAC_OPENEYE bmse000897 1 "(2R)-2,5-diaminopentanoic acid" IUPAC_SYSTEMATIC bmse000897 1 stop_ loop_ _Chem_comp_SMILES.Type _Chem_comp_SMILES.String _Chem_comp_SMILES.Entry_ID _Chem_comp_SMILES.Comp_ID isomeric C(C[C@H](C(=O)O)N)CN bmse000897 1 canonical C(CC(C(=O)O)N)CN bmse000897 1 stop_ loop_ _Chem_comp_atom.Atom_ID _Chem_comp_atom.Type_symbol _Chem_comp_atom.Stereo_config _Chem_comp_atom.Charge _Chem_comp_atom.Oxidation_number _Chem_comp_atom.Unpaired_electron_number _Chem_comp_atom.Drawing_2D_coord_x _Chem_comp_atom.Drawing_2D_coord_y _Chem_comp_atom.Entry_ID _Chem_comp_atom.Comp_ID C1 C ? ? ? ? 5.1350 1.5600 bmse000897 1 C2 C ? ? ? ? 4.2690 1.0600 bmse000897 1 C3 C ? ? ? ? 4.2690 0.0600 bmse000897 1 C4 C ? ? ? ? 3.4030 -0.4400 bmse000897 1 C5 C ? ? ? ? 3.4030 -1.4400 bmse000897 1 O6 O ? ? ? ? 5.1350 2.5600 bmse000897 1 O7 O ? ? ? ? 6.0010 1.0600 bmse000897 1 H8 H ? ? ? ? 6.5380 1.3700 bmse000897 1 N9 N ? ? ? ? 3.4030 1.5600 bmse000897 1 H10 H ? ? ? ? 2.8660 1.2500 bmse000897 1 H11 H ? ? ? ? 3.4030 2.1800 bmse000897 1 N12 N ? ? ? ? 2.5369 -1.9400 bmse000897 1 H13 H ? ? ? ? 2.5369 -2.5600 bmse000897 1 H14 H ? ? ? ? 2.0000 -1.6300 bmse000897 1 H15 H ? ? ? ? 4.2690 1.6800 bmse000897 1 H16 H ? ? ? ? 4.4810 -0.5226 bmse000897 1 H17 H ? ? ? ? 4.8796 0.1677 bmse000897 1 H18 H ? ? ? ? 3.1909 0.1426 bmse000897 1 H19 H ? ? ? ? 2.7924 -0.5477 bmse000897 1 H20 H ? ? ? ? 3.6150 -2.0226 bmse000897 1 H21 H ? ? ? ? 4.0135 -1.3323 bmse000897 1 stop_ loop_ _Atom_nomenclature.Atom_ID _Atom_nomenclature.Atom_name _Atom_nomenclature.Naming_system _Atom_nomenclature.Entry_ID _Atom_nomenclature.Comp_ID C1 C1 BMRB bmse000897 1 C2 C2 BMRB bmse000897 1 C3 C3 BMRB bmse000897 1 C4 C4 BMRB bmse000897 1 C5 C5 BMRB bmse000897 1 O6 O6 BMRB bmse000897 1 O7 O7 BMRB bmse000897 1 H8 H8 BMRB bmse000897 1 N9 N9 BMRB bmse000897 1 H10 H10 BMRB bmse000897 1 H11 H11 BMRB bmse000897 1 N12 N12 BMRB bmse000897 1 H13 H13 BMRB bmse000897 1 H14 H14 BMRB bmse000897 1 H15 H15 BMRB bmse000897 1 H16 H16 BMRB bmse000897 1 H17 H17 BMRB bmse000897 1 H18 H18 BMRB bmse000897 1 H19 H19 BMRB bmse000897 1 H20 H20 BMRB bmse000897 1 H21 H21 BMRB bmse000897 1 stop_ loop_ _Chem_comp_bond.ID _Chem_comp_bond.Type _Chem_comp_bond.Value_order _Chem_comp_bond.Atom_ID_1 _Chem_comp_bond.Atom_ID_2 _Chem_comp_bond.Details _Chem_comp_bond.Entry_ID _Chem_comp_bond.Comp_ID 1 covalent SING C1 C2 ? bmse000897 1 2 covalent DOUB C1 O6 ? bmse000897 1 3 covalent SING C1 O7 ? bmse000897 1 4 covalent SING C2 C3 ? bmse000897 1 5 covalent SING C2 N9 ? bmse000897 1 6 covalent SING C2 H15 ? bmse000897 1 7 covalent SING C3 C4 ? bmse000897 1 8 covalent SING C3 H16 ? bmse000897 1 9 covalent SING C3 H17 ? bmse000897 1 10 covalent SING C4 C5 ? bmse000897 1 11 covalent SING C4 H18 ? bmse000897 1 12 covalent SING C4 H19 ? bmse000897 1 13 covalent SING C5 N12 ? bmse000897 1 14 covalent SING C5 H20 ? bmse000897 1 15 covalent SING C5 H21 ? bmse000897 1 16 covalent SING O7 H8 ? bmse000897 1 17 covalent SING N9 H10 ? bmse000897 1 18 covalent SING N9 H11 ? bmse000897 1 19 covalent SING N12 H13 ? bmse000897 1 20 covalent SING N12 H14 ? bmse000897 1 stop_ loop_ _Chem_comp_db_link.Author_supplied _Chem_comp_db_link.Database_code _Chem_comp_db_link.Accession_code _Chem_comp_db_link.Accession_code_type _Chem_comp_db_link.Entry_mol_code _Chem_comp_db_link.Entry_mol_name _Chem_comp_db_link.Entry_experimental_method _Chem_comp_db_link.Entry_relation_type _Chem_comp_db_link.Entry_details _Chem_comp_db_link.Entry_ID _Chem_comp_db_link.Comp_ID no PubChem 144080899 sid ? D-Ornithine ? "matching entry" ? bmse000897 1 no PubChem 213263 sid ? D-Ornithine ? "matching entry" ? bmse000897 1 no PubChem 71082 cid ? D-Ornithine ? "matching entry" ? bmse000897 1 no PubChem 3798 sid ? D-Ornithine ? "matching entry" ? bmse000897 1 no KEGG C00515 "compound ID" ? D-Ornithine ? "matching entry" ? bmse000897 1 no "CAS Registry" 348-66-3 "registry number" ? D-Ornithine ? "matching entry" ? bmse000897 1 no CHEBI 16176 ? ? D-Ornithine ? "matching entry" ? bmse000897 1 no EINECS 206-482-0 ? ? D-Ornithine ? "matching entry" ? bmse000897 1 no PDB ORD "Chemical Component" ? D-Ornithine ? "matching entry" ? bmse000897 1 stop_ loop_ _Chem_comp_citation.Citation_ID _Chem_comp_citation.Citation_label _Chem_comp_citation.Entry_ID _Chem_comp_citation.Comp_ID 1 $citation_1 bmse000897 1 stop_ save_ save_sample_1 _Sample.Sf_category sample _Sample.Sf_framecode sample_1 _Sample.Entry_ID bmse000897 _Sample.ID 1 _Sample.Type solution loop_ _Sample_component.ID _Sample_component.Mol_common_name _Sample_component.Isotopic_labeling _Sample_component.Entity_ID _Sample_component.Entity_label _Sample_component.Product_ID _Sample_component.Type _Sample_component.Concentration_val _Sample_component.Concentration_val_min _Sample_component.Concentration_val_max _Sample_component.Concentration_val_units _Sample_component.Concentration_val_err _Sample_component.Vendor _Sample_component.Vendor_product_name _Sample_component.Vendor_product_code _Sample_component.Entry_ID _Sample_component.Sample_ID 1 D-Ornithine "natural abundance" 1 $D_ornithine ? Solute 100 ? ? mM ? Sigma "D-Ornithine monohydrochloride" o5250 bmse000897 1 2 D2O ? 1 ? ? Solvent 100 ? ? % ? ? ? ? bmse000897 1 3 "sodium phosphate" ? 1 ? ? Buffer 50 ? ? mM ? ? ? ? bmse000897 1 4 "sodium azide" ? 1 ? ? Cytocide 500 ? ? uM ? ? ? ? bmse000897 1 5 DSS ? 1 ? ? Reference 500 ? ? uM ? ? ? ? bmse000897 1 stop_ save_ save_sample_conditions_1 _Sample_condition_list.Sf_category sample_conditions _Sample_condition_list.Sf_framecode sample_conditions_1 _Sample_condition_list.Entry_ID bmse000897 _Sample_condition_list.ID 1 loop_ _Sample_condition_variable.Type _Sample_condition_variable.Val _Sample_condition_variable.Val_err _Sample_condition_variable.Val_units _Sample_condition_variable.Entry_ID _Sample_condition_variable.Sample_condition_list_ID pH 7.4 ? pH bmse000897 1 temperature 298 ? K bmse000897 1 stop_ save_ save_software_1 _Software.Sf_category software _Software.Sf_framecode software_1 _Software.Entry_ID bmse000897 _Software.ID 1 _Software.Name TopSpin _Software.Version 2.1 _Software.Details ? loop_ _Vendor.Name _Vendor.Address _Vendor.Electronic_address _Vendor.Entry_ID _Vendor.Software_ID "Bruker Biospin" ? ? bmse000897 1 stop_ loop_ _Task.Task _Task.Entry_ID _Task.Software_ID Collection bmse000897 1 Processing bmse000897 1 "Data analysis" bmse000897 1 "Peak picking" bmse000897 1 stop_ save_ save_Bruker_DMX_600 _NMR_spectrometer.Sf_category NMR_spectrometer _NMR_spectrometer.Sf_framecode Bruker_DMX_600 _NMR_spectrometer.Entry_ID bmse000897 _NMR_spectrometer.ID 1 _NMR_spectrometer.Manufacturer Bruker _NMR_spectrometer.Model DMX _NMR_spectrometer.Field_strength 600 save_ save_experiment_list _Experiment_list.Sf_category experiment_list _Experiment_list.Sf_framecode experiment_list _Experiment_list.Entry_ID bmse000897 _Experiment_list.ID 1 _Experiment_list.Details ? loop_ _Experiment.ID _Experiment.Name _Experiment.Raw_data_flag _Experiment.NMR_spec_expt_ID _Experiment.NMR_spec_expt_label _Experiment.Sample_ID _Experiment.Sample_label _Experiment.Sample_state _Experiment.Sample_condition_list_ID _Experiment.Sample_condition_list_label _Experiment.NMR_spectrometer_ID _Experiment.NMR_spectrometer_label _Experiment.NMR_spectral_processing_ID _Experiment.NMR_spectral_processing_label _Experiment.Entry_ID _Experiment.Experiment_list_ID 1 "1D 1H" yes ? ? 1 $sample_1 isotropic 1 $sample_conditions_1 1 $Bruker_DMX_600 ? ? bmse000897 1 2 "2D [1H,1H]-TOCSY" yes ? ? 1 $sample_1 isotropic 1 $sample_conditions_1 1 $Bruker_DMX_600 ? ? bmse000897 1 3 "1D DEPT90" yes ? ? 1 $sample_1 isotropic 1 $sample_conditions_1 1 $Bruker_DMX_600 ? ? bmse000897 1 4 "1D DEPT135" yes ? ? 1 $sample_1 isotropic 1 $sample_conditions_1 1 $Bruker_DMX_600 ? ? bmse000897 1 5 "2D [1H,13C]-HSQC" yes ? ? 1 $sample_1 isotropic 1 $sample_conditions_1 1 $Bruker_DMX_600 ? ? bmse000897 1 6 "2D [1H,13C]-HMBC" yes ? ? 1 $sample_1 isotropic 1 $sample_conditions_1 1 $Bruker_DMX_600 ? ? bmse000897 1 7 "2D [1H,1H]-COSY" yes ? ? 1 $sample_1 isotropic 1 $sample_conditions_1 1 $Bruker_DMX_600 ? ? bmse000897 1 8 "2D [1H,13C]-HMQC" yes ? ? 1 $sample_1 isotropic 1 $sample_conditions_1 1 $Bruker_DMX_600 ? ? bmse000897 1 9 "2D [1H,13C]-HSQC SW small" yes ? ? 1 $sample_1 isotropic 1 $sample_conditions_1 1 $Bruker_DMX_600 ? ? bmse000897 1 stop_ loop_ _Experiment_file.Experiment_ID _Experiment_file.Name _Experiment_file.Type _Experiment_file.Details _Experiment_file.Entry_ID _Experiment_file.Experiment_list_ID 1 standards/D_ornithine/nmr/bmse000897/1H/* "Time-domain (raw spectral data)" ? bmse000897 1 1 standards/D_ornithine/nmr/bmse000897/spectra_png/1H/00.png "Spectral image" ? bmse000897 1 1 standards/D_ornithine/nmr/bmse000897/spectra_png/1H/01.png "Spectral image" ? bmse000897 1 1 standards/D_ornithine/nmr/bmse000897/spectra_png/1H/02.png "Spectral image" ? bmse000897 1 2 standards/D_ornithine/nmr/bmse000897/HH_TOCSY/* "Time-domain (raw spectral data)" ? bmse000897 1 2 standards/D_ornithine/nmr/bmse000897/spectra_png/HH_TOCSY/00.png "Spectral image" ? bmse000897 1 2 standards/D_ornithine/nmr/bmse000897/spectra_png/HH_TOCSY/01.png "Spectral image" ? bmse000897 1 3 standards/D_ornithine/nmr/bmse000897/DEPT_90/* "Time-domain (raw spectral data)" ? bmse000897 1 3 standards/D_ornithine/nmr/bmse000897/spectra_png/DEPT_90/00.png "Spectral image" ? bmse000897 1 3 standards/D_ornithine/nmr/bmse000897/spectra_png/DEPT_90/01.png "Spectral image" ? bmse000897 1 4 standards/D_ornithine/nmr/bmse000897/DEPT_135/* "Time-domain (raw spectral data)" ? bmse000897 1 4 standards/D_ornithine/nmr/bmse000897/spectra_png/DEPT_135/00.png "Spectral image" ? bmse000897 1 4 standards/D_ornithine/nmr/bmse000897/spectra_png/DEPT_135/01.png "Spectral image" ? bmse000897 1 5 standards/D_ornithine/nmr/bmse000897/1H_13C_HSQC/* "Time-domain (raw spectral data)" ? bmse000897 1 5 standards/D_ornithine/nmr/bmse000897/spectra_png/1H_13C_HSQC/00.png "Spectral image" ? bmse000897 1 5 standards/D_ornithine/nmr/bmse000897/spectra_png/1H_13C_HSQC/01.png "Spectral image" ? bmse000897 1 6 standards/D_ornithine/nmr/bmse000897/1H_13C_HMBC/* "Time-domain (raw spectral data)" ? bmse000897 1 6 standards/D_ornithine/nmr/bmse000897/spectra_png/1H_13C_HMBC/00.png "Spectral image" ? bmse000897 1 6 standards/D_ornithine/nmr/bmse000897/spectra_png/1H_13C_HMBC/01.png "Spectral image" ? bmse000897 1 7 standards/D_ornithine/nmr/bmse000897/HH_COSY/* "Time-domain (raw spectral data)" ? bmse000897 1 7 standards/D_ornithine/nmr/bmse000897/spectra_png/HH_COSY/00.png "Spectral image" ? bmse000897 1 7 standards/D_ornithine/nmr/bmse000897/spectra_png/HH_COSY/01.png "Spectral image" ? bmse000897 1 8 standards/D_ornithine/nmr/bmse000897/1H_13C_HMQC/* "Time-domain (raw spectral data)" ? bmse000897 1 8 standards/D_ornithine/nmr/bmse000897/spectra_png/1H_13C_HMQC/00.png "Spectral image" ? bmse000897 1 8 standards/D_ornithine/nmr/bmse000897/spectra_png/1H_13C_HMQC/01.png "Spectral image" ? bmse000897 1 9 standards/D_ornithine/nmr/bmse000897/1H_13C_HSQC_SW_small/* "Time-domain (raw spectral data)" ? bmse000897 1 9 standards/D_ornithine/nmr/bmse000897/spectra_png/1H_13C_HSQC_SW_small/00.png "Spectral image" ? bmse000897 1 9 standards/D_ornithine/nmr/bmse000897/spectra_png/1H_13C_HSQC_SW_small/01.png "Spectral image" ? bmse000897 1 stop_ save_ save_chem_shift_reference _Chem_shift_reference.Sf_category chem_shift_reference _Chem_shift_reference.Sf_framecode chem_shift_reference _Chem_shift_reference.Entry_ID bmse000897 _Chem_shift_reference.ID 1 _Chem_shift_reference.Details ? loop_ _Chem_shift_ref.Atom_type _Chem_shift_ref.Atom_isotope_number _Chem_shift_ref.Mol_common_name _Chem_shift_ref.Atom_group _Chem_shift_ref.Chem_shift_units _Chem_shift_ref.Chem_shift_val _Chem_shift_ref.Ref_method _Chem_shift_ref.Ref_type _Chem_shift_ref.Indirect_shift_ratio _Chem_shift_ref.External_ref_loc _Chem_shift_ref.External_ref_sample_geometry _Chem_shift_ref.External_ref_axis _Chem_shift_ref.Entry_ID _Chem_shift_ref.Chem_shift_reference_ID H 1 DSS "methyl protons" ppm 0.00 internal direct 1.000000000 ? ? ? bmse000897 1 C 13 DSS "methyl carbons" ppm 0.00 internal direct 1.000000000 ? ? ? bmse000897 1 stop_ save_ ################################### # Assigned chemical shift lists # ################################### ################################################################### # Chemical Shift Ambiguity Index Value Definitions # # # # Index Value Definition # # # # 1 Unique (geminal atoms and geminal methyl # # groups with identical chemical shifts # # are assumed to be assigned to # # stereospecific atoms) # # 2 Ambiguity of geminal atoms or geminal methyl # # proton groups # # 3 Aromatic atoms on opposite sides of # # symmetrical rings (e.g. Tyr HE1 and HE2 # # protons) # # 4 Intraresidue ambiguities (e.g. Lys HG and # # HD protons or Trp HZ2 and HZ3 protons) # # 5 Interresidue ambiguities (Lys 12 vs. Lys 27) # # 9 Ambiguous, specific ambiguity not defined # # # ################################################################### save_assigned_chemical_shifts _Assigned_chem_shift_list.Sf_category assigned_chemical_shifts _Assigned_chem_shift_list.Sf_framecode assigned_chemical_shifts _Assigned_chem_shift_list.Entry_ID bmse000897 _Assigned_chem_shift_list.ID 1 _Assigned_chem_shift_list.Sample_condition_list_ID 1 _Assigned_chem_shift_list.Sample_condition_list_label $sample_conditions_1 _Assigned_chem_shift_list.Chem_shift_reference_ID 1 _Assigned_chem_shift_list.Chem_shift_reference_label $chem_shift_reference _Assigned_chem_shift_list.Error_derivation_method ? _Assigned_chem_shift_list.Details 'The chemical shift assignments have been taken from BMRB entry bmse000019' loop_ _Atom_chem_shift.ID _Atom_chem_shift.Entity_ID _Atom_chem_shift.Comp_index_ID _Atom_chem_shift.Comp_ID _Atom_chem_shift.Atom_ID _Atom_chem_shift.Atom_type _Atom_chem_shift.Atom_isotope_number _Atom_chem_shift.Val _Atom_chem_shift.Val_err _Atom_chem_shift.Assign_fig_of_merit _Atom_chem_shift.Ambiguity_code _Atom_chem_shift.Occupancy _Atom_chem_shift.Auth_seq_ID _Atom_chem_shift.Auth_comp_ID _Atom_chem_shift.Auth_atom_ID _Atom_chem_shift.Details _Atom_chem_shift.Entry_ID _Atom_chem_shift.Assigned_chem_shift_list_ID 1 1 1 1 C1 C 13 176.975 ? ? 1 ? ? ? C1 ? bmse000897 1 2 1 1 1 C2 C 13 56.799 ? ? 1 ? ? ? C2 ? bmse000897 1 3 1 1 1 C3 C 13 30.154 ? ? 1 ? ? ? C3 ? bmse000897 1 4 1 1 1 C4 C 13 25.462 ? ? 1 ? ? ? C4 ? bmse000897 1 5 1 1 1 C5 C 13 41.565 ? ? 1 ? ? ? C5 ? bmse000897 1 6 1 1 1 H15 H 1 3.776 ? ? 1 ? ? ? H15 ? bmse000897 1 7 1 1 1 H16 H 1 1.933 ? ? 1 ? ? ? H16 ? bmse000897 1 8 1 1 1 H17 H 1 1.933 ? ? 1 ? ? ? H17 ? bmse000897 1 9 1 1 1 H18 H 1 1.785 ? ? 1 ? ? ? H18 ? bmse000897 1 10 1 1 1 H19 H 1 1.785 ? ? 1 ? ? ? H19 ? bmse000897 1 11 1 1 1 H20 H 1 3.043 ? ? 1 ? ? ? H20 ? bmse000897 1 12 1 1 1 H21 H 1 3.043 ? ? 1 ? ? ? H21 ? bmse000897 1 stop_ save_ save_spectral_peak_1H _Spectral_peak_list.Sf_category spectral_peak_list _Spectral_peak_list.Sf_framecode spectral_peak_1H _Spectral_peak_list.Entry_ID bmse000897 _Spectral_peak_list.ID 1 _Spectral_peak_list.Sample_ID 1 _Spectral_peak_list.Sample_label $sample_1 _Spectral_peak_list.Sample_condition_list_ID 1 _Spectral_peak_list.Sample_condition_list_label $sample_conditions_1 _Spectral_peak_list.Experiment_ID 1 _Spectral_peak_list.Experiment_name '1D 1H' _Spectral_peak_list.Number_of_spectral_dimensions 1 _Spectral_peak_list.Details ? loop_ _Spectral_dim.ID _Spectral_dim.Atom_type _Spectral_dim.Atom_isotope_number _Spectral_dim.Spectral_region _Spectral_dim.Magnetization_linkage_ID _Spectral_dim.Sweep_width _Spectral_dim.Encoding_code _Spectral_dim.Encoded_source_dimension_ID _Spectral_dim.Entry_ID _Spectral_dim.Spectral_peak_list_ID 1 H 1 "Full H" ? 9615.38461538462 ? ? bmse000897 1 stop_ loop_ _Spectral_peak_software.Software_ID _Spectral_peak_software.Software_label _Spectral_peak_software.Method_ID _Spectral_peak_software.Method_label _Spectral_peak_software.Entry_ID _Spectral_peak_software.Spectral_peak_list_ID 1 $software_1 ? ? bmse000897 1 stop_ loop_ _Spectral_transition.ID _Spectral_transition.Figure_of_merit _Spectral_transition.Details _Spectral_transition.Entry_ID _Spectral_transition.Spectral_peak_list_ID 1 ? ? bmse000897 1 2 ? ? bmse000897 1 3 ? ? bmse000897 1 4 ? ? bmse000897 1 5 ? ? bmse000897 1 6 ? ? bmse000897 1 7 ? ? bmse000897 1 8 ? ? bmse000897 1 9 ? ? bmse000897 1 10 ? ? bmse000897 1 11 ? ? bmse000897 1 12 ? ? bmse000897 1 13 ? ? bmse000897 1 14 ? ? bmse000897 1 15 ? ? bmse000897 1 16 ? ? bmse000897 1 17 ? ? bmse000897 1 18 ? ? bmse000897 1 19 ? ? bmse000897 1 20 ? ? bmse000897 1 21 ? ? bmse000897 1 22 ? ? bmse000897 1 23 ? ? bmse000897 1 24 ? ? bmse000897 1 25 ? ? bmse000897 1 26 ? ? bmse000897 1 27 ? ? bmse000897 1 stop_ loop_ _Spectral_transition_general_char.Spectral_transition_ID _Spectral_transition_general_char.Intensity_val _Spectral_transition_general_char.Intensity_val_err _Spectral_transition_general_char.Measurement_method _Spectral_transition_general_char.Entry_ID _Spectral_transition_general_char.Spectral_peak_list_ID 1 3.83 ? Height bmse000897 1 2 7.70 ? Height bmse000897 1 3 3.88 ? Height bmse000897 1 4 7.92 ? Height bmse000897 1 5 15.00 ? Height bmse000897 1 6 8.47 ? Height bmse000897 1 7 1.60 ? Height bmse000897 1 8 3.52 ? Height bmse000897 1 9 5.00 ? Height bmse000897 1 10 5.28 ? Height bmse000897 1 11 4.12 ? Height bmse000897 1 12 2.98 ? Height bmse000897 1 13 2.41 ? Height bmse000897 1 14 1.36 ? Height bmse000897 1 15 1.49 ? Height bmse000897 1 16 1.34 ? Height bmse000897 1 17 1.83 ? Height bmse000897 1 18 1.64 ? Height bmse000897 1 19 1.59 ? Height bmse000897 1 20 1.66 ? Height bmse000897 1 21 1.12 ? Height bmse000897 1 22 1.45 ? Height bmse000897 1 23 1.88 ? Height bmse000897 1 24 2.09 ? Height bmse000897 1 25 1.46 ? Height bmse000897 1 26 1.48 ? Height bmse000897 1 27 1.24 ? Height bmse000897 1 stop_ loop_ _Spectral_transition_char.Spectral_transition_ID _Spectral_transition_char.Spectral_dim_ID _Spectral_transition_char.Chem_shift_val _Spectral_transition_char.Chem_shift_val_err _Spectral_transition_char.Entry_ID _Spectral_transition_char.Spectral_peak_list_ID 1 1 3.7840 ? bmse000897 1 2 1 3.7739 ? bmse000897 1 3 1 3.7638 ? bmse000897 1 4 1 3.0530 ? bmse000897 1 5 1 3.0402 ? bmse000897 1 6 1 3.0277 ? bmse000897 1 7 1 1.9608 ? bmse000897 1 8 1 1.9508 ? bmse000897 1 9 1 1.9428 ? bmse000897 1 10 1 1.9325 ? bmse000897 1 11 1 1.9263 ? bmse000897 1 12 1 1.9229 ? bmse000897 1 13 1 1.9164 ? bmse000897 1 14 1 1.8500 ? bmse000897 1 15 1 1.8382 ? bmse000897 1 16 1 1.8345 ? bmse000897 1 17 1 1.8278 ? bmse000897 1 18 1 1.8228 ? bmse000897 1 19 1 1.8169 ? bmse000897 1 20 1 1.8106 ? bmse000897 1 21 1 1.7990 ? bmse000897 1 22 1 1.7635 ? bmse000897 1 23 1 1.7536 ? bmse000897 1 24 1 1.7411 ? bmse000897 1 25 1 1.7359 ? bmse000897 1 26 1 1.7300 ? bmse000897 1 27 1 1.7242 ? bmse000897 1 stop_ save_