BMRB

Biological Magnetic Resonance Data Bank


A Repository for Data from NMR Spectroscopy on Proteins, Peptides, Nucleic Acids, and other Biomolecules
Member of WWPDB

By BMRB ID

CGI API

Use http://www.bmrb.wisc.edu/data_library/summary/index.php?bmrbId=ID, for example http://www.bmrb.wisc.edu/data_library/summary/index.php?bmrbId=16384 to link to the summary page for BMRB entry 16384.

REST API

Use http://rest.bmrb.wisc.edu/bmrb/ID/nmr-star3, for example http://rest.bmrb.wisc.edu/bmrb/16384/nmr-star3 to link to BMRB entry 16384 in the NMR-STAR 3.1 format.

Use http://rest.bmrb.wisc.edu/bmrb/ID/nmr-star2, for example http://rest.bmrb.wisc.edu/bmrb/16384/nmr-star2 to link to BMRB entry 16384 in the NMR-STAR 2.1 format.

(For completeness,) http://rest.bmrb.wisc.edu/bmrb/ID/html points to the entry summary webpage. For example http://rest.bmrb.wisc.edu/bmrb/16384/html.

By PDB ID

Use the database search CGI form on the BMRB homepage. For example, http://www.bmrb.wisc.edu/search/simplesearch.php?dbname=PDB&pdbid=1brv&show_bmrbid=on&output=html shows BMRB ID(s) for PDB entry 1BRV.

By residue sequence

Use FASTA search program (CGI form) to find matching residue sequence in BMRB database. http://www.bmrb.wisc.edu/data_access/fasta.php?seq_class=protein&sequence=GIVEQCCT lists all BMRB entries for proteins matching GIVEQ sequence. Accepted values for seq_class parameter are protein and DNA, to search in protein and DNA sequence databases, resp.

Mirror sites

CGI API will also work at BMRB mirror sites in Osaka, Japan (http://bmrb.protein.osaka-u.ac.jp/) and Florence, Italy (http://bmrb.cerm.unifi.it/).