BMRB Entry 17602

Name: Backbone 1H, 13C, and 15N Chemical Shift Assignments of wildtype phosphomannomutase/phosphoglucomutase
Published: 2012-08-23

Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR17602

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Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title: Backbone 1H, 13C, and 15N Chemical Shift Assignments of wildtype phosphomannomutase/phosphoglucomutase PubMed: 22242625

Deposition date: 2011-04-26 Original release date: 2012-08-23

Authors: VanDoren, Steven; Akella, Sarma

Citation: Sarma, Akella; Anbanandam, Asokan; Kelm, Allek; Mehra-Chaudhary, Ritcha; Wei, Yirui; Qin, Peiwu; Lee, Yingying; Berjanskii, Mark; Mick, Jacob; Beamer, Lesa; Van Doren, Steven. "Solution NMR of a 463-residue phosphohexomutase: domain 4 mobility, substates, and phosphoryl transfer defect." Biochemistry 51, 807-819 (2012).

Assembly members:
PMM-PGM, polymer, 463 residues, Formula weight is not available
MG, non-polymer, 24.305 Da.

Natural source: Common Name: P. aeruginosa Taxonomy ID: 287 Superkingdom: Bacteria Kingdom: not available Genus/species: Pseudomonas aeruginosa

Experimental source: Production method: recombinant technology Host organism: Escherichia coli

Entity Sequences (FASTA):
PMM-PGM: MSTVKAPTLPASIFRAYDIR GVVGDTLTAETAYWIGRAIG SESLARGEPCVAVGRDGRLS GPELVKQLIQGLVDCGCQVS DVGMVPTPVLYYAANVLEGK SGVMLTGSHNPPDYNGFKIV VAGETLANEQIQALRERIEK NDLASGVGSVEQVDILPRYF KQIRDDIAMAKPMKVVVDCG NGVAGVIAPQLIEALGCSVI PLYCEVDGNFPNHHPDPGKP ENLKDLIAKVKAENADLGLA FDGDGDRVGVVTNTGTIIYP DRLLMLFAKDVVSRNPGADI IFDVKCTRRLIALISGYGGR PVMWKTGHSLIKKKMKETGA LLAGEMSGHVFFKERWFGFD DGIYSAARLLEILSQDQRDS EHVFSAFPSDISTPEINITV TEDSKFAIIEALQRDAQWGE GNITTLDGVRVDYPKGWGLV RASNTTPVLVLRFEADTEEE LERIKTVFRNQLKAVDSSLP VPF

Data sets:

assigned_chemical_shifts

Data type	Count
13C chemical shifts	1394
15N chemical shifts	523
1H chemical shifts	523

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
Hide all

Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	Monomer	1
2	Mg2+	2

Entities:

Entity 1, Monomer 463 residues - Formula weight is not available

1

MET

SER

THR

VAL

LYS

ALA

PRO

THR

LEU

PRO

2

ALA

SER

ILE

PHE

ARG

ALA

TYR

ASP

ILE

ARG

3

GLY

VAL

GLY

ASP

THR

LEU

THR

ALA

GLU

4

THR

ALA

TYR

TRP

ILE

GLY

ARG

ALA

ILE

GLY

5

SER

GLU

SER

LEU

ALA

ARG

GLY

GLU

PRO

CYS

6

VAL

ALA

VAL

GLY

ARG

ASP

GLY

ARG

LEU

SER

7

GLY

PRO

GLU

LEU

VAL

LYS

GLN

LEU

ILE

GLN

8

GLY

LEU

VAL

ASP

CYS

GLY

CYS

GLN

VAL

SER

9

ASP

VAL

GLY

MET

VAL

PRO

THR

PRO

VAL

LEU

10

TYR

ALA

ASN

VAL

LEU

GLU

GLY

LYS

11

SER

GLY

VAL

MET

LEU

THR

GLY

SER

HIS

ASN

12

PRO

ASP

TYR

ASN

GLY

PHE

LYS

ILE

VAL

13

VAL

ALA

GLY

GLU

THR

LEU

ALA

ASN

GLU

GLN

14

ILE

GLN

ALA

LEU

ARG

GLU

ARG

ILE

GLU

LYS

15

ASN

ASP

LEU

ALA

SER

GLY

VAL

GLY

SER

VAL

16

GLU

GLN

VAL

ASP

ILE

LEU

PRO

ARG

TYR

PHE

17

LYS

GLN

ILE

ARG

ASP

ILE

ALA

MET

ALA

18

LYS

PRO

MET

LYS

VAL

ASP

CYS

GLY

19

ASN

GLY

VAL

ALA

GLY

VAL

ILE

ALA

PRO

GLN

20

LEU

ILE

GLU

ALA

LEU

GLY

CYS

SER

VAL

ILE

21

PRO

LEU

TYR

CYS

GLU

VAL

ASP

GLY

ASN

PHE

22

PRO

ASN

HIS

PRO

ASP

PRO

GLY

LYS

PRO

23

GLU

ASN

LEU

LYS

ASP

LEU

ILE

ALA

LYS

VAL

24

LYS

ALA

GLU

ASN

ALA

ASP

LEU

GLY

LEU

ALA

25

PHE

ASP

GLY

ASP

GLY

ASP

ARG

VAL

GLY

VAL

26

VAL

THR

ASN

THR

GLY

THR

ILE

TYR

PRO

27

ASP

ARG

LEU

MET

LEU

PHE

ALA

LYS

ASP

28

VAL

SER

ARG

ASN

PRO

GLY

ALA

ASP

ILE

29

ILE

PHE

ASP

VAL

LYS

CYS

THR

ARG

LEU

30

ILE

ALA

LEU

ILE

SER

GLY

TYR

GLY

ARG

31

PRO

VAL

MET

TRP

LYS

THR

GLY

HIS

SER

LEU

32

ILE

LYS

MET

LYS

GLU

THR

GLY

ALA

33

LEU

ALA

GLY

GLU

MET

SER

GLY

HIS

VAL

34

PHE

LYS

GLU

ARG

TRP

PHE

GLY

PHE

ASP

35

ASP

GLY

ILE

TYR

SER

ALA

ARG

LEU

36

GLU

ILE

LEU

SER

GLN

ASP

GLN

ARG

ASP

SER

37

GLU

HIS

VAL

PHE

SER

ALA

PHE

PRO

SER

ASP

38

ILE

SER

THR

PRO

GLU

ILE

ASN

ILE

THR

VAL

39

THR

GLU

ASP

SER

LYS

PHE

ALA

ILE

GLU

40

ALA

LEU

GLN

ARG

ASP

ALA

GLN

TRP

GLY

GLU

41

GLY

ASN

ILE

THR

LEU

ASP

GLY

VAL

ARG

42

VAL

ASP

TYR

PRO

LYS

GLY

TRP

GLY

LEU

VAL

43

ARG

ALA

SER

ASN

THR

PRO

VAL

LEU

VAL

44

LEU

ARG

PHE

GLU

ALA

ASP

THR

GLU

45

LEU

GLU

ARG

ILE

LYS

THR

VAL

PHE

ARG

ASN

46

GLN

LEU

LYS

ALA

VAL

ASP

SER

LEU

PRO

47

VAL

PRO

PHE

Entity 2, Mg2+ - Mg - 24.305 Da.

1

MG

Samples:

sample_1: PMM-PGM, [U-100% 13C; U-100% 15N; U-80% 2H], 1.0 mM; D2O, [U-99.9% 2H], 5%; H2O 95%; Magnesium Chloride 1 mM; MOPS 50 mM

PMM_sample_conditions_1: ionic strength: 0.003 M; pH: 7.4; pressure: 1 atm; temperature: 310 K

Experiments:

Name	Sample	Sample state	Sample conditions
2D 1H-15N TROSY	sample_1	isotropic	PMM_sample_conditions_1
3D TROSY-HNCO	sample_1	isotropic	PMM_sample_conditions_1
3D TROSY-HNCA	sample_1	isotropic	PMM_sample_conditions_1
3D TROSY-HN(CO)CA	sample_1	isotropic	PMM_sample_conditions_1
3D TROSY-HNCACB	sample_1	isotropic	PMM_sample_conditions_1
3D TROSY-HNCACO	sample_1	isotropic	PMM_sample_conditions_1

Software:

TOPSPIN v2.1.3, Bruker Biospin - collection

NMRPipe, Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax - processing

SPARKY, Goddard - chemical shift assignment

NMR spectrometers:

Bruker Avance 800 MHz

BMRB	17652
PDB	1K2Y 1K35 1P5D 1P5G 1PCJ 1PCM 2FKF 2FKM 2H4L 2H5A 3BKQ 3C04 3RSM 4IL8 4MRQ
DBJ	BAK92897 BAP25224 BAP54026 BAQ43263 BAR70810
EMBL	CAW30471 CCQ87804 CDH74092 CDH80443 CDI93917
GB	AAA25701 AAG08707 ABJ14705 ABR82184 AEO77919
REF	NP_254009 WP_003098295 WP_003114359 WP_003117161 WP_003121305
SP	P26276 Q02E40

Biological Magnetic Resonance Data Bank