BMRB Entry 30171

Name: HIV-1 reverse transcriptase thumb subdomain
Published: 2017-01-12

Click here to enlarge.

PDB ID: 5t82
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR30171
MolProbity Validation Chart

NMR-STAR file interactive viewer.
NMR-STAR v3 text file.
NMR-STAR v2.1 text file (deprecated)
XML gzip file.
RDF gzip file.
All files associated with the entry

Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

Select model:

I am color blind

Download raw data. Direct link to this display. Help

Title: HIV-1 reverse transcriptase thumb subdomain PubMed: 27858311

Deposition date: 2016-09-06 Original release date: 2017-01-12

Authors: Gronenborn, A.; Sharaf, N.; Byeon, I-J.

Citation: Sharaf, N.; Brereton, A.; Byeon, I-J.; Karplus, P.; Gronenborn, A.. "NMR structure of the HIV-1 reverse transcriptase thumb subdomain" J. Biomol. NMR 66, 273-280 (2016).

Assembly members:
entity_1, polymer, 90 residues, 10460.995 Da.

Natural source: Common Name: HIV-1 Taxonomy ID: 11676 Superkingdom: Viruses Kingdom: not available Genus/species: Lentivirus HIV-1

Experimental source: Production method: recombinant technology Host organism: Escherichia

Entity Sequences (FASTA):
entity_1: DKWTVQPIVLPEKDSWTVND IQKLVGKLNWASQIYPGIKV RQLSKLLRGTKALTEVIPLT EEAELELAENREILKEPVHG VYLEHHHHHH

Data sets:

assigned_chemical_shifts
- assigned_chemical_shifts_1

Data type	Count
13C chemical shifts	276
15N chemical shifts	86
1H chemical shifts	577

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
Hide all

Entity Assembly ID	Entity Name	Entity ID
1	entity_1	1

Name	Sample	Sample state	Sample conditions
2D 1H-15N HSQC	sample_1	isotropic	sample_conditions_1
3D HN(CO)CACB	sample_1	isotropic	sample_conditions_1
3D HNCACB	sample_1	isotropic	sample_conditions_1
3D HCCH-TOCSY	sample_1	isotropic	sample_conditions_1
3D H(CCO)NH	sample_1	isotropic	sample_conditions_1
3D C(CO)NH	sample_1	isotropic	sample_conditions_1
3D SIMULTANEOUS 13C- and 15N- EDITED NOESY	sample_1	isotropic	sample_conditions_1

Download simulated HSQC data in one of the following formats:
CSV: Backbone or all simulated shifts
SPARKY: Backbone or all simulated shifts

1	ASP	LYS	TRP	THR	VAL	GLN	PRO	ILE	VAL	LEU
2	PRO	GLU	LYS	ASP	SER	TRP	THR	VAL	ASN	ASP
3	ILE	GLN	LYS	LEU	VAL	GLY	LYS	LEU	ASN	TRP
4	ALA	SER	GLN	ILE	TYR	PRO	GLY	ILE	LYS	VAL
5	ARG	GLN	LEU	SER	LYS	LEU	LEU	ARG	GLY	THR
6	LYS	ALA	LEU	THR	GLU	VAL	ILE	PRO	LEU	THR
7	GLU	GLU	ALA	GLU	LEU	GLU	LEU	ALA	GLU	ASN
8	ARG	GLU	ILE	LEU	LYS	GLU	PRO	VAL	HIS	GLY
9	VAL	TYR	LEU	GLU	HIS	HIS	HIS	HIS	HIS	HIS

Biological Magnetic Resonance Data Bank

BMRB Entry 30171

Title: HIV-1 reverse transcriptase thumb subdomain PubMed: 27858311

Additional metadata:

Assembly:

Entities:

Samples:

Experiments:

Software:

NMR spectrometers:

1	ASP	LYS	TRP	THR	VAL	GLN	PRO	ILE	VAL	LEU
2	PRO	GLU	LYS	ASP	SER	TRP	THR	VAL	ASN	ASP
3	ILE	GLN	LYS	LEU	VAL	GLY	LYS	LEU	ASN	TRP
4	ALA	SER	GLN	ILE	TYR	PRO	GLY	ILE	LYS	VAL
5	ARG	GLN	LEU	SER	LYS	LEU	LEU	ARG	GLY	THR
6	LYS	ALA	LEU	THR	GLU	VAL	ILE	PRO	LEU	THR
7	GLU	GLU	ALA	GLU	LEU	GLU	LEU	ALA	GLU	ASN
8	ARG	GLU	ILE	LEU	LYS	GLU	PRO	VAL	HIS	GLY
9	VAL	TYR	LEU	GLU	HIS	HIS	HIS	HIS	HIS	HIS

1	ASP	LYS	TRP	THR	VAL	GLN	PRO	ILE	VAL	LEU
2	PRO	GLU	LYS	ASP	SER	TRP	THR	VAL	ASN	ASP
3	ILE	GLN	LYS	LEU	VAL	GLY	LYS	LEU	ASN	TRP
4	ALA	SER	GLN	ILE	TYR	PRO	GLY	ILE	LYS	VAL
5	ARG	GLN	LEU	SER	LYS	LEU	LEU	ARG	GLY	THR
6	LYS	ALA	LEU	THR	GLU	VAL	ILE	PRO	LEU	THR
7	GLU	GLU	ALA	GLU	LEU	GLU	LEU	ALA	GLU	ASN
8	ARG	GLU	ILE	LEU	LYS	GLU	PRO	VAL	HIS	GLY
9	VAL	TYR	LEU	GLU	HIS	HIS	HIS	HIS	HIS	HIS

1	ASP	LYS	TRP	THR	VAL	GLN	PRO	ILE	VAL	LEU
2	PRO	GLU	LYS	ASP	SER	TRP	THR	VAL	ASN	ASP
3	ILE	GLN	LYS	LEU	VAL	GLY	LYS	LEU	ASN	TRP
4	ALA	SER	GLN	ILE	TYR	PRO	GLY	ILE	LYS	VAL
5	ARG	GLN	LEU	SER	LYS	LEU	LEU	ARG	GLY	THR
6	LYS	ALA	LEU	THR	GLU	VAL	ILE	PRO	LEU	THR
7	GLU	GLU	ALA	GLU	LEU	GLU	LEU	ALA	GLU	ASN
8	ARG	GLU	ILE	LEU	LYS	GLU	PRO	VAL	HIS	GLY
9	VAL	TYR	LEU	GLU	HIS	HIS	HIS	HIS	HIS	HIS